Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47238 * 2 1 4 4 H 1.09002 * 109.46473 * 304.99295 * 3 2 1 5 5 O 1.42894 * 109.47172 * 64.99526 * 3 2 1 6 6 C 1.35900 * 116.99898 * 260.63693 * 5 3 2 7 7 C 1.38749 * 120.05481 * 5.60613 * 6 5 3 8 8 C 1.38125 * 119.94696 * 179.97438 * 7 6 5 9 9 C 1.38292 * 120.05356 * 359.97438 * 8 7 6 10 10 C 1.38244 * 120.11007 * 0.04469 * 9 8 7 11 11 C 1.50701 * 119.96952 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05417 * 359.67763 * 10 9 8 13 13 C 1.50697 * 109.47096 * 184.99724 * 3 2 1 14 14 O 1.21280 * 119.99816 * 244.99601 * 13 3 2 15 15 N 1.34777 * 120.00456 * 64.99470 * 13 3 2 16 16 C 1.46493 * 120.00361 * 179.72406 * 15 13 3 17 17 C 1.53007 * 109.47334 * 180.27878 * 16 15 13 18 18 C 1.50699 * 109.47042 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00453 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99844 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99606 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47276 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47303 * 120.00207 * 22 20 18 25 25 H 1.48500 * 109.46795 * 239.99952 * 22 20 18 26 26 H 1.09004 * 109.46594 * 60.00708 * 1 2 3 27 27 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47601 * 300.00487 * 1 2 3 29 29 H 1.08997 * 109.47601 * 239.99513 * 2 1 3 30 30 H 1.09004 * 109.47055 * 119.99559 * 2 1 3 31 31 H 1.07997 * 120.02995 * 0.02562 * 7 6 5 32 32 H 1.07993 * 119.97802 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.94519 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.46733 * 90.00476 * 11 10 9 35 35 H 1.09007 * 109.46705 * 209.99465 * 11 10 9 36 36 H 1.08995 * 109.47506 * 329.99965 * 11 10 9 37 37 H 1.08001 * 120.02299 * 180.29766 * 12 10 9 38 38 H 0.97004 * 119.99395 * 0.02562 * 15 13 3 39 39 H 1.09004 * 109.47179 * 300.27837 * 16 15 13 40 40 H 1.09003 * 109.47140 * 60.27703 * 16 15 13 41 41 H 1.08999 * 109.46696 * 299.99714 * 17 16 15 42 42 H 1.08997 * 109.46907 * 60.00189 * 17 16 15 43 43 H 0.97007 * 119.99965 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 8 1.6619 2.0814 1.2209 6 6 0.5659 2.8841 1.1836 7 6 -0.1988 2.9627 0.0285 8 6 -1.3126 3.7788 -0.0069 9 6 -1.6661 4.5168 1.1080 10 6 -0.9056 4.4405 2.2599 11 6 -1.2935 5.2465 3.4728 12 6 0.2061 3.6212 2.3021 13 6 3.5419 1.4443 -0.1238 14 8 4.2249 1.8611 0.7876 15 7 4.1261 0.9826 -1.2472 16 6 5.5859 0.9900 -1.3699 17 6 5.9859 0.4242 -2.7341 18 6 7.4876 0.4324 -2.8605 19 1 8.0959 0.8035 -2.0489 20 6 8.0850 -0.0350 -4.0119 21 7 7.3443 -0.4873 -4.9999 22 14 9.9464 -0.0255 -4.1683 23 1 10.5447 0.5296 -2.9277 24 1 10.4329 -1.4133 -4.3751 25 1 10.3415 0.8152 -5.3269 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.0762 2.3857 -0.8420 32 1 -1.9078 3.8407 -0.9058 33 1 -2.5376 5.1540 1.0785 34 1 -1.9683 4.6611 4.0974 35 1 -0.3990 5.4993 4.0422 36 1 -1.7935 6.1618 3.1561 37 1 0.7971 3.5583 3.2039 38 1 3.5797 0.6496 -1.9762 39 1 5.9531 2.0122 -1.2786 40 1 6.0200 0.3762 -0.5805 41 1 5.6188 -0.5980 -2.8252 42 1 5.5519 1.0380 -3.5233 43 1 7.7646 -0.8158 -5.8102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272969506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = -67.837943 kcal Electronic energy + Delta-G solvation = -22637.048191 eV Core-core repulsion = 19260.950556 eV Total energy + Delta-G solvation = -3376.097635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80668 -39.21197 -37.63514 -34.93389 -33.95587 -32.80468 -32.71912 -30.39891 -29.83840 -27.45545 -27.19737 -24.62711 -22.77927 -22.63057 -21.61729 -20.89644 -19.83482 -18.33708 -17.23552 -16.48108 -16.16289 -15.93607 -15.60225 -15.02002 -14.72182 -14.65136 -14.46998 -14.03991 -13.85514 -13.55788 -13.38585 -13.08283 -12.98815 -12.50609 -12.34221 -12.22963 -12.11330 -11.91823 -11.76944 -11.35497 -11.23453 -11.09247 -11.00988 -10.67782 -10.63042 -10.38407 -9.80270 -9.48292 -9.21043 -8.97142 -8.61677 -8.41275 -8.27333 -6.12770 -4.15539 1.12784 1.28631 2.73282 2.83042 3.26584 3.34350 3.39536 3.57334 3.75610 4.38941 4.48119 4.61338 4.62591 4.64422 4.81976 4.88993 5.01234 5.07023 5.16319 5.23874 5.24620 5.32429 5.34934 5.45951 5.51609 5.65668 5.74140 5.84919 5.88961 6.01618 6.17619 6.24530 6.26383 6.29343 6.39574 6.59522 6.67892 6.80766 7.27512 7.47396 7.56562 7.85183 7.89027 8.23446 8.52622 8.90541 9.49600 10.98844 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.002671 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.488237 B =10481.231746 C =10747.955251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.064 3.936 4 H 0.101 0.899 5 O -0.281 6.281 6 C 0.140 3.860 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.049 4.049 11 C -0.115 4.115 12 C -0.153 4.153 13 C 0.505 3.495 14 O -0.527 6.527 15 N -0.717 5.717 16 C 0.122 3.878 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.398 0.602 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.409 6.183 10.413 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.119 0.881 5 O -0.193 6.193 6 C 0.094 3.906 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.172 4.172 13 C 0.288 3.712 14 O -0.403 6.403 15 N -0.369 5.369 16 C 0.001 3.999 17 C -0.025 4.025 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.148 0.852 38 H 0.231 0.769 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.735 6.363 11.075 24.353 hybrid contribution 0.706 -0.284 -0.907 1.184 sum -20.028 6.079 10.168 23.270 Atomic orbital electron populations 1.21927 0.94571 1.02458 1.02264 1.21979 0.97169 0.93954 1.04495 1.22466 0.93924 0.95279 0.87947 0.88113 1.86220 1.42168 1.58168 1.32727 1.19077 0.86650 0.90486 0.94403 1.21376 0.98780 1.05126 0.98473 1.20902 0.95638 0.94686 0.98145 1.20912 1.01229 1.02704 0.93343 1.19695 0.93765 0.95742 0.95711 1.20808 1.02124 0.98996 0.95193 1.20306 0.99422 0.99404 0.98077 1.20184 0.88829 0.78849 0.83322 1.90712 1.64752 1.45916 1.38942 1.46254 1.09897 1.63518 1.17207 1.21782 0.75830 1.01113 1.01218 1.19335 0.97174 0.96487 0.89486 1.21081 0.91142 1.42200 1.01576 0.92159 1.24998 0.98591 0.95024 0.95693 1.69962 1.35250 1.42174 1.05903 0.86451 0.85172 0.77734 0.78190 1.19563 1.20907 1.20916 0.92292 0.91893 0.92106 0.89392 0.90001 0.84970 0.85812 0.86106 0.90942 0.91268 0.91348 0.85176 0.76852 0.92402 0.92336 0.95848 0.95888 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.48 37.16 0.32 -1.08 16 2 C -0.14 -1.49 5.61 -26.73 -0.15 -1.64 16 3 C 0.06 0.85 2.53 -27.88 -0.07 0.78 16 4 H 0.10 1.12 5.43 -51.93 -0.28 0.84 16 5 O -0.28 -4.19 9.12 -39.29 -0.36 -4.54 16 6 C 0.14 1.79 5.65 -39.22 -0.22 1.57 16 7 C -0.22 -2.34 7.36 -39.43 -0.29 -2.63 16 8 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 9 C -0.16 -1.49 9.70 -39.56 -0.38 -1.87 16 10 C -0.05 -0.48 5.88 -104.64 -0.62 -1.09 16 11 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 12 C -0.15 -1.81 9.64 -39.43 -0.38 -2.19 16 13 C 0.50 8.78 7.18 -10.99 -0.08 8.70 16 14 O -0.53 -11.52 16.51 -14.30 -0.24 -11.76 16 15 N -0.72 -12.22 5.46 -60.29 -0.33 -12.55 16 16 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 18 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.06 0.46 6.73 -51.93 -0.35 0.11 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 29 H 0.09 0.85 7.77 -51.93 -0.40 0.44 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.13 1.23 4.27 -52.49 -0.22 1.01 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 36 H 0.07 0.39 8.08 -51.93 -0.42 -0.02 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.40 5.65 8.18 -40.82 -0.33 5.31 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -32.70 354.87 -8.89 -41.59 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.54 Total: 2.17 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.49 Total: -11.40 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.41 Total: -37.65 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.59 Total: -16.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.70 -8.89 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272969506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.247 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds