Wall clock time and date at job start Tue Mar 31 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47238 * 2 1 4 4 H 1.09002 * 109.46473 * 304.99295 * 3 2 1 5 5 O 1.42894 * 109.47172 * 64.99526 * 3 2 1 6 6 C 1.35900 * 116.99898 * 260.63693 * 5 3 2 7 7 C 1.38749 * 120.05481 * 5.60613 * 6 5 3 8 8 C 1.38125 * 119.94696 * 179.97438 * 7 6 5 9 9 C 1.38292 * 120.05356 * 359.97438 * 8 7 6 10 10 C 1.38244 * 120.11007 * 0.04469 * 9 8 7 11 11 C 1.50701 * 119.96952 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05417 * 359.67763 * 10 9 8 13 13 C 1.50697 * 109.47096 * 184.99724 * 3 2 1 14 14 O 1.21280 * 119.99816 * 244.99601 * 13 3 2 15 15 N 1.34777 * 120.00456 * 64.99470 * 13 3 2 16 16 C 1.46493 * 120.00361 * 179.72406 * 15 13 3 17 17 C 1.53007 * 109.47334 * 180.27878 * 16 15 13 18 18 C 1.50699 * 109.47042 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00453 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99844 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99606 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47276 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47303 * 120.00207 * 22 20 18 25 25 H 1.48500 * 109.46795 * 239.99952 * 22 20 18 26 26 H 1.09004 * 109.46594 * 60.00708 * 1 2 3 27 27 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47601 * 300.00487 * 1 2 3 29 29 H 1.08997 * 109.47601 * 239.99513 * 2 1 3 30 30 H 1.09004 * 109.47055 * 119.99559 * 2 1 3 31 31 H 1.07997 * 120.02995 * 0.02562 * 7 6 5 32 32 H 1.07993 * 119.97802 * 179.97438 * 8 7 6 33 33 H 1.07996 * 119.94519 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.46733 * 90.00476 * 11 10 9 35 35 H 1.09007 * 109.46705 * 209.99465 * 11 10 9 36 36 H 1.08995 * 109.47506 * 329.99965 * 11 10 9 37 37 H 1.08001 * 120.02299 * 180.29766 * 12 10 9 38 38 H 0.97004 * 119.99395 * 0.02562 * 15 13 3 39 39 H 1.09004 * 109.47179 * 300.27837 * 16 15 13 40 40 H 1.09003 * 109.47140 * 60.27703 * 16 15 13 41 41 H 1.08999 * 109.46696 * 299.99714 * 17 16 15 42 42 H 1.08997 * 109.46907 * 60.00189 * 17 16 15 43 43 H 0.97007 * 119.99965 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 8 1.6619 2.0814 1.2209 6 6 0.5659 2.8841 1.1836 7 6 -0.1988 2.9627 0.0285 8 6 -1.3126 3.7788 -0.0069 9 6 -1.6661 4.5168 1.1080 10 6 -0.9056 4.4405 2.2599 11 6 -1.2935 5.2465 3.4728 12 6 0.2061 3.6212 2.3021 13 6 3.5419 1.4443 -0.1238 14 8 4.2249 1.8611 0.7876 15 7 4.1261 0.9826 -1.2472 16 6 5.5859 0.9900 -1.3699 17 6 5.9859 0.4242 -2.7341 18 6 7.4876 0.4324 -2.8605 19 1 8.0959 0.8035 -2.0489 20 6 8.0850 -0.0350 -4.0119 21 7 7.3443 -0.4873 -4.9999 22 14 9.9464 -0.0255 -4.1683 23 1 10.5447 0.5296 -2.9277 24 1 10.4329 -1.4133 -4.3751 25 1 10.3415 0.8152 -5.3269 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.0762 2.3857 -0.8420 32 1 -1.9078 3.8407 -0.9058 33 1 -2.5376 5.1540 1.0785 34 1 -1.9683 4.6611 4.0974 35 1 -0.3990 5.4993 4.0422 36 1 -1.7935 6.1618 3.1561 37 1 0.7971 3.5583 3.2039 38 1 3.5797 0.6496 -1.9762 39 1 5.9531 2.0122 -1.2786 40 1 6.0200 0.3762 -0.5805 41 1 5.6188 -0.5980 -2.8252 42 1 5.5519 1.0380 -3.5233 43 1 7.7646 -0.8158 -5.8102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272969506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:33 Heat of formation + Delta-G solvation = -86.908813 kcal Electronic energy + Delta-G solvation = -22637.875166 eV Core-core repulsion = 19260.950556 eV Total energy + Delta-G solvation = -3376.924610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83705 -40.43558 -38.62436 -36.65232 -35.14694 -34.52647 -33.43111 -31.68365 -31.15511 -28.64779 -27.86771 -26.46675 -23.56961 -23.46302 -23.17506 -22.35264 -20.99439 -19.29273 -18.58849 -18.37332 -17.10568 -17.01206 -16.69868 -16.49396 -16.30332 -16.08582 -15.46480 -15.02145 -14.86341 -14.73142 -14.41085 -14.31162 -14.14288 -13.74859 -13.34704 -13.24292 -13.08332 -12.96704 -12.91387 -12.69432 -12.54609 -12.48148 -12.28106 -12.08875 -11.87921 -11.69305 -11.48971 -11.43238 -10.79980 -10.62107 -10.12812 -9.73292 -9.12229 -8.25472 -6.35386 0.36812 0.48216 1.40080 1.41396 1.43125 1.53746 1.62760 2.38331 2.57651 2.80429 3.09567 3.48113 3.60337 3.71109 3.91919 3.94509 4.15011 4.22124 4.35661 4.39379 4.45250 4.45971 4.48535 4.56478 4.71464 4.81967 4.83873 4.88211 4.97576 5.00904 5.07246 5.19701 5.25054 5.28891 5.39216 5.45111 5.50457 5.56630 5.66052 5.76583 5.85877 6.14559 6.35115 6.53198 6.77493 7.12714 7.33867 8.86404 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.002671 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.488237 B =10481.231746 C =10747.955251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.073 3.927 4 H 0.127 0.873 5 O -0.309 6.309 6 C 0.112 3.888 7 C -0.223 4.223 8 C -0.076 4.076 9 C -0.163 4.163 10 C -0.053 4.053 11 C -0.114 4.114 12 C -0.177 4.177 13 C 0.503 3.497 14 O -0.577 6.577 15 N -0.706 5.706 16 C 0.140 3.860 17 C 0.024 3.976 18 C -0.547 4.547 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.414 0.586 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.013 0.987 42 H 0.012 0.988 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.165 6.667 9.687 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.014 3.986 4 H 0.144 0.856 5 O -0.223 6.223 6 C 0.067 3.933 7 C -0.241 4.241 8 C -0.094 4.094 9 C -0.181 4.181 10 C -0.054 4.054 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.289 3.711 14 O -0.457 6.457 15 N -0.359 5.359 16 C 0.017 3.983 17 C -0.014 4.014 18 C -0.585 4.585 19 H 0.075 0.925 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.251 0.749 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.529 6.841 10.336 25.714 hybrid contribution 1.177 -0.383 -0.651 1.398 sum -21.352 6.458 9.685 24.319 Atomic orbital electron populations 1.21884 0.92712 1.03431 1.02495 1.22001 0.98683 0.92043 1.04467 1.22458 0.90354 0.97158 0.88677 0.85625 1.86172 1.43553 1.59089 1.33445 1.19345 0.86870 0.91291 0.95778 1.21545 0.98994 1.05590 0.97992 1.21295 0.95139 0.93658 0.99289 1.21309 1.01606 1.02431 0.92767 1.20039 0.92967 0.95208 0.97147 1.20868 1.02423 0.99442 0.94294 1.20486 1.00608 1.00586 0.97897 1.20987 0.90767 0.77196 0.82145 1.90684 1.66363 1.48033 1.40583 1.46005 1.08419 1.63458 1.18016 1.21286 0.78268 0.99790 0.98967 1.19137 0.95814 0.95716 0.90697 1.21479 0.92848 1.42424 1.01779 0.92517 1.25833 1.03351 0.94523 0.95324 1.70050 1.37188 1.42735 1.06422 0.85420 0.79468 0.78019 0.78289 1.19183 1.20159 1.20184 0.90539 0.90534 0.93349 0.87903 0.91543 0.83719 0.82957 0.83408 0.89806 0.91508 0.89648 0.86174 0.74919 0.93596 0.93439 0.96852 0.96980 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.48 71.98 0.61 -1.76 16 2 C -0.13 -2.76 5.61 30.59 0.17 -2.59 16 3 C 0.07 1.91 2.53 29.85 0.08 1.98 16 4 H 0.13 2.60 5.43 -2.39 -0.01 2.58 16 5 O -0.31 -9.44 9.12 -73.44 -0.67 -10.11 16 6 C 0.11 2.86 5.65 22.50 0.13 2.99 16 7 C -0.22 -4.38 7.36 22.37 0.16 -4.21 16 8 C -0.08 -1.20 10.04 22.26 0.22 -0.97 16 9 C -0.16 -2.53 9.70 22.28 0.22 -2.31 16 10 C -0.05 -0.98 5.88 -19.88 -0.12 -1.10 16 11 C -0.11 -1.41 10.01 71.24 0.71 -0.69 16 12 C -0.18 -4.25 9.64 22.37 0.22 -4.04 16 13 C 0.50 17.76 7.18 87.66 0.63 18.38 16 14 O -0.58 -26.17 16.51 15.96 0.26 -25.91 16 15 N -0.71 -24.14 5.46 -463.06 -2.53 -26.66 16 16 C 0.14 6.03 5.61 86.38 0.48 6.51 16 17 C 0.02 1.18 5.09 29.85 0.15 1.33 16 18 C -0.55 -30.37 9.11 25.60 0.23 -30.13 16 19 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 20 C 0.01 0.48 5.46 84.66 0.46 0.94 16 21 N -0.92 -53.41 13.29 21.45 0.28 -53.13 16 22 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H 0.08 0.95 6.73 -2.38 -0.02 0.94 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 0.91 6.53 -2.39 -0.02 0.90 16 29 H 0.10 1.79 7.77 -2.39 -0.02 1.77 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.15 2.32 4.27 -2.91 -0.01 2.31 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.85 8.09 -2.38 -0.02 0.83 16 36 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 37 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.41 11.42 8.18 -92.71 -0.76 10.67 16 39 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -71.73 354.87 3.99 -67.74 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.25 Total: 18.26 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 4.36 Total: -15.67 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.24 Total: -79.79 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.41 Total: -36.02 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.73 3.99 -67.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272969506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.168 kcal (2) G-P(sol) polarization free energy of solvation -71.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds