Wall clock time and date at job start Tue Mar 31 2020 06:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47515 * 2 1 4 4 H 1.08996 * 109.47230 * 304.99660 * 3 2 1 5 5 O 1.42902 * 109.47120 * 64.99852 * 3 2 1 6 6 C 1.35902 * 117.00008 * 260.59496 * 5 3 2 7 7 C 1.38748 * 120.05226 * 5.66324 * 6 5 3 8 8 C 1.38122 * 119.94200 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05592 * 0.02562 * 8 7 6 10 10 C 1.38250 * 120.10985 * 359.97438 * 9 8 7 11 11 C 1.38170 * 120.05340 * 359.68589 * 10 9 8 12 12 C 1.50700 * 120.02613 * 180.29484 * 11 10 9 13 13 C 1.50696 * 109.47122 * 184.99552 * 3 2 1 14 14 O 1.21276 * 120.00485 * 245.00002 * 13 3 2 15 15 N 1.34780 * 120.00015 * 65.00395 * 13 3 2 16 16 C 1.46500 * 120.00205 * 179.97438 * 15 13 3 17 17 C 1.53005 * 109.46913 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.46608 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00414 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99655 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00210 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00054 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47052 * 90.00341 * 22 20 18 24 24 H 1.48495 * 109.47080 * 209.99964 * 22 20 18 25 25 H 1.48500 * 109.47352 * 330.00223 * 22 20 18 26 26 H 1.09002 * 109.47260 * 300.00213 * 1 2 3 27 27 H 1.09005 * 109.46709 * 59.99756 * 1 2 3 28 28 H 1.09003 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47171 * 119.99979 * 2 1 3 30 30 H 1.09002 * 109.47260 * 239.99787 * 2 1 3 31 31 H 1.08000 * 120.03018 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.97634 * 179.97438 * 8 7 6 33 33 H 1.07999 * 119.94431 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96740 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.46818 * 270.31850 * 12 11 10 36 36 H 1.09005 * 109.46805 * 30.31978 * 12 11 10 37 37 H 1.08996 * 109.46886 * 150.31693 * 12 11 10 38 38 H 0.97002 * 119.99789 * 359.97438 * 15 13 3 39 39 H 1.08993 * 109.47472 * 300.00047 * 16 15 13 40 40 H 1.09002 * 109.47137 * 60.00058 * 16 15 13 41 41 H 1.08996 * 109.46971 * 299.99999 * 17 16 15 42 42 H 1.09001 * 109.46976 * 60.00761 * 17 16 15 43 43 H 0.96997 * 120.00622 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 0.5666 2.8848 1.1836 7 6 -0.1984 2.9633 0.0287 8 6 -1.3110 3.7810 -0.0071 9 6 -1.6624 4.5214 1.1067 10 6 -0.9018 4.4449 2.2587 11 6 0.2080 3.6231 2.3017 12 6 1.0328 3.5351 3.5599 13 6 3.5419 1.4442 -0.1237 14 8 4.2251 1.8609 0.7876 15 7 4.1261 0.9826 -1.2472 16 6 5.5861 0.9848 -1.3678 17 6 5.9862 0.4133 -2.7295 18 6 7.4882 0.4149 -2.8532 19 1 8.0965 0.7860 -2.0417 20 6 8.0857 -0.0573 -4.0025 21 7 9.3964 -0.0554 -4.1108 22 14 7.0336 -0.6998 -5.4060 23 1 6.7074 0.4153 -6.3308 24 1 7.7796 -1.7515 -6.1426 25 1 5.7775 -1.2740 -4.8604 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.0759 2.3855 -0.8416 32 1 -1.9066 3.8428 -0.9059 33 1 -2.5325 5.1605 1.0767 34 1 -1.1782 5.0245 3.1271 35 1 1.8155 4.2934 3.5350 36 1 0.3928 3.7018 4.4263 37 1 1.4867 2.5465 3.6283 38 1 3.5797 0.6490 -1.9761 39 1 5.9566 2.0060 -1.2789 40 1 6.0170 0.3718 -0.5761 41 1 5.6159 -0.6080 -2.8180 42 1 5.5555 1.0260 -3.5215 43 1 9.8168 -0.3880 -4.9192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273053713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:36 Heat of formation + Delta-G solvation = -62.364814 kcal Electronic energy + Delta-G solvation = -22969.265403 eV Core-core repulsion = 19593.405101 eV Total energy + Delta-G solvation = -3375.860302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91029 -39.28267 -37.51465 -35.06388 -34.14318 -32.86297 -32.58434 -30.50635 -30.19684 -27.80795 -26.82108 -24.75110 -23.32477 -21.89415 -21.71687 -20.87726 -20.00005 -18.45902 -17.29198 -16.93379 -16.09603 -15.93946 -15.75529 -15.08094 -14.87082 -14.72688 -14.20799 -14.08060 -13.75185 -13.69544 -13.32361 -13.18275 -12.84363 -12.65621 -12.48261 -12.39126 -12.16151 -12.02279 -11.59158 -11.53602 -11.39541 -11.27141 -11.10585 -10.71370 -10.44459 -10.30137 -10.00283 -9.52202 -9.32944 -9.01369 -8.70294 -8.60941 -8.24827 -6.14126 -4.14689 1.10730 1.23882 2.66967 2.75180 3.22245 3.29612 3.30961 3.55006 3.67167 4.34356 4.40645 4.53712 4.58578 4.62656 4.75252 4.88435 4.90653 5.08621 5.15202 5.18548 5.21157 5.36107 5.43277 5.48482 5.63547 5.65761 5.68228 5.78937 5.95611 6.03105 6.09199 6.13493 6.14614 6.26969 6.33450 6.49955 6.57971 6.63726 7.06033 7.17568 7.22880 7.62146 7.76699 8.38194 8.44679 8.90180 9.45560 10.98914 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.003063 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.232924 B = 9138.755794 C = 9507.890483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.063 3.937 4 H 0.101 0.899 5 O -0.277 6.277 6 C 0.133 3.867 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.158 4.158 10 C -0.085 4.085 11 C -0.115 4.115 12 C -0.107 4.107 13 C 0.506 3.494 14 O -0.522 6.522 15 N -0.721 5.721 16 C 0.131 3.869 17 C -0.021 4.021 18 C -0.524 4.524 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.898 5.898 22 Si 0.882 3.118 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.396 0.604 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.022 0.978 42 H 0.018 0.982 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.384 4.626 8.634 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.003 3.997 4 H 0.118 0.882 5 O -0.189 6.189 6 C 0.087 3.913 7 C -0.228 4.228 8 C -0.105 4.105 9 C -0.176 4.176 10 C -0.103 4.103 11 C -0.116 4.116 12 C -0.163 4.163 13 C 0.289 3.711 14 O -0.398 6.398 15 N -0.374 5.374 16 C 0.009 3.991 17 C -0.059 4.059 18 C -0.562 4.562 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.229 0.771 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.561 4.832 9.356 26.724 hybrid contribution -0.731 -0.522 -1.548 1.790 sum -25.293 4.310 7.808 26.819 Atomic orbital electron populations 1.21928 0.94543 1.02468 1.02294 1.21978 0.97192 0.93972 1.04443 1.22453 0.93824 0.95278 0.88113 0.88181 1.86212 1.42166 1.58135 1.32412 1.18916 0.87138 0.91080 0.94174 1.21366 0.98535 1.04684 0.98261 1.20899 0.95923 0.95316 0.98318 1.21023 1.01099 1.01841 0.93668 1.20887 0.93836 0.97257 0.98309 1.19310 0.98329 0.98650 0.95263 1.20626 0.98864 1.03515 0.93328 1.20169 0.88865 0.78815 0.83224 1.90727 1.64695 1.45535 1.38793 1.46248 1.09792 1.63945 1.17371 1.21563 0.75768 1.01595 1.00164 1.19798 0.98455 0.96085 0.91576 1.20907 0.89025 1.42868 1.03437 0.90582 1.25002 0.94870 0.95090 0.98301 1.69899 1.08889 1.46656 1.28134 0.86751 0.80802 0.79040 0.82467 1.20212 1.21242 1.19083 0.92035 0.92339 0.91893 0.89934 0.89544 0.85002 0.85920 0.86061 0.85512 0.91180 0.91878 0.90866 0.77056 0.91792 0.91713 0.95928 0.96402 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.48 37.16 0.32 -0.97 16 2 C -0.14 -1.38 5.61 -26.73 -0.15 -1.53 16 3 C 0.06 0.79 2.53 -27.88 -0.07 0.72 16 4 H 0.10 1.03 5.43 -51.93 -0.28 0.75 16 5 O -0.28 -3.90 8.16 -39.29 -0.32 -4.22 16 6 C 0.13 1.63 5.62 -39.22 -0.22 1.41 16 7 C -0.21 -2.14 7.36 -39.44 -0.29 -2.43 16 8 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 9 C -0.16 -1.37 10.04 -39.56 -0.40 -1.77 16 10 C -0.08 -0.79 9.70 -39.60 -0.38 -1.18 16 11 C -0.11 -1.31 5.89 -104.47 -0.62 -1.92 16 12 C -0.11 -1.13 9.79 36.01 0.35 -0.78 16 13 C 0.51 8.32 7.18 -10.99 -0.08 8.24 16 14 O -0.52 -10.96 16.51 -14.30 -0.24 -11.20 16 15 N -0.72 -11.45 5.46 -60.29 -0.33 -11.78 16 16 C 0.13 2.62 5.61 -4.04 -0.02 2.60 16 17 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 18 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 22 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 26 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 27 H 0.06 0.42 6.73 -51.93 -0.35 0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.75 7.77 -51.93 -0.40 0.34 16 31 H 0.13 1.15 4.27 -52.49 -0.22 0.92 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.07 0.87 7.53 -51.93 -0.39 0.47 16 38 H 0.40 5.01 8.18 -40.82 -0.33 4.68 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 42 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -33.24 349.94 -8.49 -41.73 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.48 Total: 2.86 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.51 Total: -12.35 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.44 Total: -38.14 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.56 Total: -15.41 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.24 -8.49 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273053713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.634 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds