Wall clock time and date at job start Tue Mar 31 2020 06:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47515 * 2 1 4 4 H 1.08996 * 109.47230 * 304.99660 * 3 2 1 5 5 O 1.42902 * 109.47120 * 64.99852 * 3 2 1 6 6 C 1.35902 * 117.00008 * 260.59496 * 5 3 2 7 7 C 1.38748 * 120.05226 * 5.66324 * 6 5 3 8 8 C 1.38122 * 119.94200 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05592 * 0.02562 * 8 7 6 10 10 C 1.38250 * 120.10985 * 359.97438 * 9 8 7 11 11 C 1.38170 * 120.05340 * 359.68589 * 10 9 8 12 12 C 1.50700 * 120.02613 * 180.29484 * 11 10 9 13 13 C 1.50696 * 109.47122 * 184.99552 * 3 2 1 14 14 O 1.21276 * 120.00485 * 245.00002 * 13 3 2 15 15 N 1.34780 * 120.00015 * 65.00395 * 13 3 2 16 16 C 1.46500 * 120.00205 * 179.97438 * 15 13 3 17 17 C 1.53005 * 109.46913 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.46608 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00414 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99655 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00210 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00054 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47052 * 90.00341 * 22 20 18 24 24 H 1.48495 * 109.47080 * 209.99964 * 22 20 18 25 25 H 1.48500 * 109.47352 * 330.00223 * 22 20 18 26 26 H 1.09002 * 109.47260 * 300.00213 * 1 2 3 27 27 H 1.09005 * 109.46709 * 59.99756 * 1 2 3 28 28 H 1.09003 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47171 * 119.99979 * 2 1 3 30 30 H 1.09002 * 109.47260 * 239.99787 * 2 1 3 31 31 H 1.08000 * 120.03018 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.97634 * 179.97438 * 8 7 6 33 33 H 1.07999 * 119.94431 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96740 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.46818 * 270.31850 * 12 11 10 36 36 H 1.09005 * 109.46805 * 30.31978 * 12 11 10 37 37 H 1.08996 * 109.46886 * 150.31693 * 12 11 10 38 38 H 0.97002 * 119.99789 * 359.97438 * 15 13 3 39 39 H 1.08993 * 109.47472 * 300.00047 * 16 15 13 40 40 H 1.09002 * 109.47137 * 60.00058 * 16 15 13 41 41 H 1.08996 * 109.46971 * 299.99999 * 17 16 15 42 42 H 1.09001 * 109.46976 * 60.00761 * 17 16 15 43 43 H 0.96997 * 120.00622 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 0.5666 2.8848 1.1836 7 6 -0.1984 2.9633 0.0287 8 6 -1.3110 3.7810 -0.0071 9 6 -1.6624 4.5214 1.1067 10 6 -0.9018 4.4449 2.2587 11 6 0.2080 3.6231 2.3017 12 6 1.0328 3.5351 3.5599 13 6 3.5419 1.4442 -0.1237 14 8 4.2251 1.8609 0.7876 15 7 4.1261 0.9826 -1.2472 16 6 5.5861 0.9848 -1.3678 17 6 5.9862 0.4133 -2.7295 18 6 7.4882 0.4149 -2.8532 19 1 8.0965 0.7860 -2.0417 20 6 8.0857 -0.0573 -4.0025 21 7 9.3964 -0.0554 -4.1108 22 14 7.0336 -0.6998 -5.4060 23 1 6.7074 0.4153 -6.3308 24 1 7.7796 -1.7515 -6.1426 25 1 5.7775 -1.2740 -4.8604 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.0759 2.3855 -0.8416 32 1 -1.9066 3.8428 -0.9059 33 1 -2.5325 5.1605 1.0767 34 1 -1.1782 5.0245 3.1271 35 1 1.8155 4.2934 3.5350 36 1 0.3928 3.7018 4.4263 37 1 1.4867 2.5465 3.6283 38 1 3.5797 0.6490 -1.9761 39 1 5.9566 2.0060 -1.2789 40 1 6.0170 0.3718 -0.5761 41 1 5.6159 -0.6080 -2.8180 42 1 5.5555 1.0260 -3.5215 43 1 9.8168 -0.3880 -4.9192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273053713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:36 Heat of formation + Delta-G solvation = -83.203943 kcal Electronic energy + Delta-G solvation = -22970.169055 eV Core-core repulsion = 19593.405101 eV Total energy + Delta-G solvation = -3376.763954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85896 -40.45711 -38.43331 -36.68838 -35.15959 -34.60627 -33.42837 -32.08116 -31.11618 -28.88487 -27.63704 -26.46453 -24.07163 -23.03328 -22.55647 -22.50673 -21.17225 -19.33195 -18.96592 -18.47589 -17.09945 -16.94239 -16.60460 -16.33219 -16.17973 -16.15001 -15.57525 -15.08856 -14.92205 -14.79066 -14.58642 -14.33910 -14.02380 -13.64684 -13.37054 -13.31576 -13.18071 -13.10552 -12.96853 -12.78734 -12.29994 -12.23139 -12.18577 -12.08904 -11.90628 -11.75941 -11.52791 -11.46512 -10.81507 -10.79208 -10.15736 -9.72974 -9.05012 -8.30217 -6.38185 0.39678 0.49207 1.39653 1.42710 1.44099 1.53838 1.63062 2.37170 2.56202 2.83164 3.04976 3.48785 3.60702 3.72308 3.88570 3.96189 4.16284 4.24518 4.30568 4.38998 4.40658 4.43338 4.48191 4.66532 4.72186 4.73579 4.76191 4.77335 4.98552 5.00297 5.07136 5.09048 5.30693 5.31433 5.36529 5.39097 5.42975 5.54655 5.61340 5.62611 5.88175 6.20909 6.36071 6.53649 6.70123 7.14666 7.26521 8.86746 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.003063 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.232924 B = 9138.755794 C = 9507.890483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.072 3.928 4 H 0.128 0.872 5 O -0.305 6.305 6 C 0.104 3.896 7 C -0.213 4.213 8 C -0.088 4.088 9 C -0.157 4.157 10 C -0.088 4.088 11 C -0.140 4.140 12 C -0.104 4.104 13 C 0.503 3.497 14 O -0.576 6.576 15 N -0.706 5.706 16 C 0.145 3.855 17 C -0.011 4.011 18 C -0.541 4.541 19 H 0.026 0.974 20 C 0.003 3.997 21 N -0.952 5.952 22 Si 0.961 3.039 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.232 1.232 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.417 0.583 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.774 4.388 6.586 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.012 3.988 4 H 0.145 0.855 5 O -0.218 6.218 6 C 0.059 3.941 7 C -0.231 4.231 8 C -0.106 4.106 9 C -0.175 4.175 10 C -0.106 4.106 11 C -0.140 4.140 12 C -0.160 4.160 13 C 0.289 3.711 14 O -0.455 6.455 15 N -0.359 5.359 16 C 0.021 3.979 17 C -0.049 4.049 18 C -0.580 4.580 19 H 0.045 0.955 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.155 1.155 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.007 4.591 7.306 30.263 hybrid contribution 0.670 -0.355 -0.802 1.103 sum -28.337 4.237 6.503 29.381 Atomic orbital electron populations 1.21884 0.92834 1.03374 1.02464 1.22006 0.98558 0.92035 1.04556 1.22475 0.90227 0.97206 0.88867 0.85506 1.86176 1.43442 1.58991 1.33191 1.19214 0.87409 0.91921 0.95545 1.21563 0.98653 1.05047 0.97860 1.21291 0.95487 0.94365 0.99440 1.21422 1.01455 1.01520 0.93108 1.21184 0.93055 0.96750 0.99613 1.19577 0.99435 0.99713 0.95322 1.20581 0.99015 1.01880 0.94571 1.21012 0.90794 0.77158 0.82135 1.90703 1.66375 1.47806 1.40648 1.45925 1.08051 1.63773 1.18198 1.21076 0.78387 0.99801 0.98622 1.19652 0.94719 0.97537 0.93000 1.21260 0.91896 1.42534 1.02280 0.95532 1.26121 0.96301 0.95229 1.01781 1.70081 1.11483 1.48262 1.29383 0.85518 0.79704 0.78538 0.77989 1.18959 1.21418 1.15495 0.93521 0.90468 0.90605 0.91693 0.87559 0.83550 0.83152 0.83378 0.83460 0.92176 0.89631 0.93020 0.74572 0.93872 0.93726 0.94051 0.94323 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.48 71.98 0.61 -1.44 16 2 C -0.13 -2.40 5.61 30.59 0.17 -2.23 16 3 C 0.07 1.69 2.53 29.85 0.08 1.77 16 4 H 0.13 2.26 5.43 -2.39 -0.01 2.24 16 5 O -0.30 -8.66 8.16 -73.46 -0.60 -9.26 16 6 C 0.10 2.48 5.62 22.50 0.13 2.61 16 7 C -0.21 -3.81 7.36 22.36 0.16 -3.65 16 8 C -0.09 -1.26 10.04 22.26 0.22 -1.04 16 9 C -0.16 -2.21 10.04 22.29 0.22 -1.98 16 10 C -0.09 -1.48 9.70 22.26 0.22 -1.26 16 11 C -0.14 -3.13 5.89 -19.77 -0.12 -3.24 16 12 C -0.10 -2.27 9.79 71.24 0.70 -1.58 16 13 C 0.50 16.51 7.18 87.66 0.63 17.14 16 14 O -0.58 -25.26 16.51 15.97 0.26 -25.00 16 15 N -0.71 -21.50 5.46 -463.06 -2.53 -24.03 16 16 C 0.14 5.86 5.61 86.38 0.48 6.34 16 17 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 18 C -0.54 -30.70 9.66 25.60 0.25 -30.45 16 19 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 20 C 0.00 0.15 5.47 84.65 0.46 0.61 16 21 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 22 Si 0.96 41.40 27.47 68.60 1.88 43.28 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.23 -8.69 6.54 99.48 0.65 -8.04 16 26 H 0.05 0.80 6.53 -2.39 -0.02 0.79 16 27 H 0.08 0.78 6.73 -2.38 -0.02 0.76 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.11 1.47 7.77 -2.39 -0.02 1.45 16 31 H 0.15 2.02 4.27 -2.91 -0.01 2.01 16 32 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 37 H 0.05 1.32 7.53 -2.39 -0.02 1.30 16 38 H 0.42 9.17 8.18 -92.71 -0.76 8.41 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 42 H 0.04 1.53 7.57 -2.39 -0.02 1.52 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -77.07 349.94 3.86 -73.20 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.20 Total: 19.54 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 4.34 Total: -18.77 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.23 Total: -83.00 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.34 Total: -34.25 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.88 Total: 43.28 kcal Total: -77.07 3.86 -73.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273053713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.999 kcal (2) G-P(sol) polarization free energy of solvation -77.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds