Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47276 * 2 1 4 4 H 1.09003 * 109.47010 * 54.99860 * 3 2 1 5 5 O 1.42902 * 109.46814 * 295.00427 * 3 2 1 6 6 C 1.35901 * 117.00159 * 94.14688 * 5 3 2 7 7 C 1.38756 * 120.05277 * 2.28474 * 6 5 3 8 8 C 1.38128 * 119.94031 * 179.70337 * 7 6 5 9 9 C 1.38286 * 120.05452 * 0.59312 * 8 7 6 10 10 C 1.38239 * 120.11415 * 359.67951 * 9 8 7 11 11 C 1.38172 * 120.05413 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.02456 * 180.02562 * 11 10 9 13 13 C 1.50690 * 109.47286 * 175.00281 * 3 2 1 14 14 O 1.21287 * 120.00374 * 115.00166 * 13 3 2 15 15 N 1.34776 * 120.00258 * 294.99799 * 13 3 2 16 16 C 1.46499 * 120.00321 * 179.97438 * 15 13 3 17 17 C 1.53004 * 109.47031 * 180.02562 * 16 15 13 18 18 C 1.50704 * 109.46878 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99630 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99709 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47287 * 89.99776 * 22 20 18 24 24 H 1.48504 * 109.47223 * 210.00275 * 22 20 18 25 25 H 1.48507 * 109.47089 * 329.99659 * 22 20 18 26 26 H 1.08993 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46582 * 299.99945 * 1 2 3 28 28 H 1.08996 * 109.47006 * 59.99691 * 1 2 3 29 29 H 1.08998 * 109.46888 * 240.00488 * 2 1 3 30 30 H 1.08999 * 109.47708 * 120.00101 * 2 1 3 31 31 H 1.07997 * 120.02952 * 359.97438 * 7 6 5 32 32 H 1.07996 * 119.97088 * 180.29559 * 8 7 6 33 33 H 1.08003 * 119.94486 * 179.70480 * 9 8 7 34 34 H 1.08000 * 119.97805 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47336 * 269.97574 * 12 11 10 36 36 H 1.08997 * 109.47401 * 29.98551 * 12 11 10 37 37 H 1.09012 * 109.46791 * 149.97711 * 12 11 10 38 38 H 0.97001 * 119.99761 * 0.02562 * 15 13 3 39 39 H 1.09002 * 109.47248 * 300.00299 * 16 15 13 40 40 H 1.09003 * 109.46989 * 60.00315 * 16 15 13 41 41 H 1.09002 * 109.47065 * 300.00064 * 17 16 15 42 42 H 1.08993 * 109.47316 * 60.00193 * 17 16 15 43 43 H 0.96998 * 120.00393 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5059 2.7958 -1.2113 7 6 -0.2247 2.9196 -0.0382 8 6 -1.3961 3.6514 -0.0295 9 6 -1.8473 4.2501 -1.1915 10 6 -1.1243 4.1236 -2.3629 11 6 0.0514 3.3977 -2.3754 12 6 0.8394 3.2606 -3.6526 13 6 3.5419 1.4443 0.1238 14 8 4.2250 1.8611 -0.7876 15 7 4.1261 0.9828 1.2472 16 6 5.5861 0.9841 1.3673 17 6 5.9863 0.4128 2.7292 18 6 7.4883 0.4147 2.8529 19 1 8.0966 0.7857 2.0413 20 6 8.0858 -0.0574 4.0024 21 7 7.3451 -0.5087 4.9908 22 14 9.9474 -0.0544 4.1561 23 1 10.3931 1.2318 4.7494 24 1 10.3738 -1.1769 5.0300 25 1 10.5555 -0.2160 2.8108 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 0.1246 2.4479 0.8684 32 1 -1.9626 3.7521 0.8844 33 1 -2.7660 4.8179 -1.1838 34 1 -1.4789 4.5917 -3.2692 35 1 0.5022 2.3771 -4.1946 36 1 0.6873 4.1458 -4.2702 37 1 1.8989 3.1599 -3.4168 38 1 3.5798 0.6492 1.9760 39 1 6.0164 0.3705 0.5757 40 1 5.9572 2.0051 1.2780 41 1 5.5561 1.0260 3.5210 42 1 5.6153 -0.6082 2.8181 43 1 7.7654 -0.8412 5.7993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273053715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = -66.226215 kcal Electronic energy + Delta-G solvation = -22908.947477 eV Core-core repulsion = 19532.919732 eV Total energy + Delta-G solvation = -3376.027745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87554 -39.21065 -37.45914 -34.93800 -34.05824 -32.88659 -32.55502 -30.41883 -29.82041 -27.64784 -26.76277 -24.65885 -23.28002 -21.90508 -21.69444 -20.99336 -19.95410 -18.40208 -17.25564 -16.47323 -16.03872 -15.85719 -15.73760 -14.99237 -14.78098 -14.66073 -14.44373 -14.00605 -13.74052 -13.52986 -13.28391 -13.04913 -12.76119 -12.42956 -12.34216 -12.30813 -12.08867 -12.00567 -11.55510 -11.35526 -11.24513 -11.11997 -11.04423 -10.68026 -10.61052 -10.37895 -9.81023 -9.49096 -9.22242 -8.97446 -8.62015 -8.41410 -8.19916 -6.12829 -4.15786 1.14363 1.28341 2.72618 2.81967 3.27634 3.33905 3.38118 3.56864 3.78318 4.38714 4.45541 4.60728 4.63342 4.68709 4.81738 4.93451 4.98409 5.12096 5.21460 5.24473 5.26924 5.41133 5.49578 5.52649 5.62455 5.71307 5.73837 5.85160 6.02498 6.12075 6.17678 6.25426 6.28776 6.31141 6.37029 6.62051 6.67378 6.80028 7.26289 7.46865 7.56211 7.84816 7.88336 8.23088 8.51793 8.90036 9.49356 10.98755 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029742 B = 0.002816 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.212030 B = 9939.192244 C =10234.701456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.063 3.937 4 H 0.100 0.900 5 O -0.278 6.278 6 C 0.135 3.865 7 C -0.209 4.209 8 C -0.086 4.086 9 C -0.159 4.159 10 C -0.085 4.085 11 C -0.117 4.117 12 C -0.108 4.108 13 C 0.507 3.493 14 O -0.527 6.527 15 N -0.717 5.717 16 C 0.123 3.877 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.398 0.602 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.688 5.183 -10.525 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.003 3.997 4 H 0.118 0.882 5 O -0.190 6.190 6 C 0.089 3.911 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.177 4.177 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.165 4.165 13 C 0.290 3.710 14 O -0.403 6.403 15 N -0.369 5.369 16 C 0.001 3.999 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.999 5.372 -11.178 23.533 hybrid contribution 0.624 -0.219 0.927 1.139 sum -19.376 5.152 -10.251 22.518 Atomic orbital electron populations 1.21941 0.94571 1.02430 1.02307 1.22001 0.97177 0.94072 1.04469 1.22445 0.94032 0.95147 0.88062 0.88231 1.86218 1.36746 1.62433 1.33564 1.18904 0.86060 0.92285 0.93852 1.21348 0.98214 1.05470 0.97734 1.20898 0.95356 0.95885 0.98236 1.21008 1.00988 1.02722 0.93030 1.20875 0.93450 0.97634 0.98308 1.19284 0.97139 1.01098 0.94247 1.20638 1.00593 1.01699 0.93528 1.20097 0.88682 0.78865 0.83314 1.90713 1.64730 1.45913 1.38928 1.46247 1.09892 1.63520 1.17207 1.21783 0.75788 1.01113 1.01237 1.19329 0.97148 0.96451 0.89512 1.21043 0.91123 1.42240 1.01697 0.92210 1.24991 0.98577 0.95005 0.95674 1.69946 1.35353 1.42024 1.05978 0.86507 0.85162 0.77693 0.78174 1.20534 1.21142 1.19703 0.91947 0.92264 0.92120 0.90033 0.89441 0.85014 0.85910 0.86100 0.85569 0.91483 0.91846 0.90567 0.76851 0.92337 0.92386 0.95900 0.95852 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.45 37.16 0.31 -1.09 16 2 C -0.14 -1.50 5.61 -26.73 -0.15 -1.65 16 3 C 0.06 0.83 2.57 -27.89 -0.07 0.75 16 4 H 0.10 1.10 5.37 -51.93 -0.28 0.82 16 5 O -0.28 -4.04 8.25 -39.29 -0.32 -4.36 16 6 C 0.13 1.70 5.30 -39.22 -0.21 1.49 16 7 C -0.21 -2.23 7.16 -39.43 -0.28 -2.51 16 8 C -0.09 -0.79 10.04 -39.60 -0.40 -1.19 16 9 C -0.16 -1.41 10.04 -39.56 -0.40 -1.81 16 10 C -0.08 -0.81 9.70 -39.61 -0.38 -1.19 16 11 C -0.12 -1.35 5.89 -104.47 -0.62 -1.97 16 12 C -0.11 -1.15 9.79 36.01 0.35 -0.80 16 13 C 0.51 8.71 7.18 -10.99 -0.08 8.63 16 14 O -0.53 -11.34 16.51 -14.31 -0.24 -11.57 16 15 N -0.72 -12.12 5.46 -60.29 -0.33 -12.45 16 16 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 22 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.47 6.80 -51.93 -0.35 0.11 16 28 H 0.06 0.61 6.27 -51.93 -0.33 0.29 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.84 7.77 -51.93 -0.40 0.44 16 31 H 0.13 1.23 4.54 -52.49 -0.24 0.99 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.08 0.97 7.53 -51.92 -0.39 0.58 16 38 H 0.40 5.61 8.18 -40.82 -0.33 5.28 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -32.33 353.13 -8.86 -41.19 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.51 Total: 2.44 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.49 Total: -11.71 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.41 Total: -37.52 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.56 Total: -15.94 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.33 -8.86 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273053715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.033 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds