Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47276 * 2 1 4 4 H 1.09003 * 109.47010 * 54.99860 * 3 2 1 5 5 O 1.42902 * 109.46814 * 295.00427 * 3 2 1 6 6 C 1.35901 * 117.00159 * 94.14688 * 5 3 2 7 7 C 1.38756 * 120.05277 * 2.28474 * 6 5 3 8 8 C 1.38128 * 119.94031 * 179.70337 * 7 6 5 9 9 C 1.38286 * 120.05452 * 0.59312 * 8 7 6 10 10 C 1.38239 * 120.11415 * 359.67951 * 9 8 7 11 11 C 1.38172 * 120.05413 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.02456 * 180.02562 * 11 10 9 13 13 C 1.50690 * 109.47286 * 175.00281 * 3 2 1 14 14 O 1.21287 * 120.00374 * 115.00166 * 13 3 2 15 15 N 1.34776 * 120.00258 * 294.99799 * 13 3 2 16 16 C 1.46499 * 120.00321 * 179.97438 * 15 13 3 17 17 C 1.53004 * 109.47031 * 180.02562 * 16 15 13 18 18 C 1.50704 * 109.46878 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99630 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99709 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47287 * 89.99776 * 22 20 18 24 24 H 1.48504 * 109.47223 * 210.00275 * 22 20 18 25 25 H 1.48507 * 109.47089 * 329.99659 * 22 20 18 26 26 H 1.08993 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46582 * 299.99945 * 1 2 3 28 28 H 1.08996 * 109.47006 * 59.99691 * 1 2 3 29 29 H 1.08998 * 109.46888 * 240.00488 * 2 1 3 30 30 H 1.08999 * 109.47708 * 120.00101 * 2 1 3 31 31 H 1.07997 * 120.02952 * 359.97438 * 7 6 5 32 32 H 1.07996 * 119.97088 * 180.29559 * 8 7 6 33 33 H 1.08003 * 119.94486 * 179.70480 * 9 8 7 34 34 H 1.08000 * 119.97805 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47336 * 269.97574 * 12 11 10 36 36 H 1.08997 * 109.47401 * 29.98551 * 12 11 10 37 37 H 1.09012 * 109.46791 * 149.97711 * 12 11 10 38 38 H 0.97001 * 119.99761 * 0.02562 * 15 13 3 39 39 H 1.09002 * 109.47248 * 300.00299 * 16 15 13 40 40 H 1.09003 * 109.46989 * 60.00315 * 16 15 13 41 41 H 1.09002 * 109.47065 * 300.00064 * 17 16 15 42 42 H 1.08993 * 109.47316 * 60.00193 * 17 16 15 43 43 H 0.96998 * 120.00393 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5059 2.7958 -1.2113 7 6 -0.2247 2.9196 -0.0382 8 6 -1.3961 3.6514 -0.0295 9 6 -1.8473 4.2501 -1.1915 10 6 -1.1243 4.1236 -2.3629 11 6 0.0514 3.3977 -2.3754 12 6 0.8394 3.2606 -3.6526 13 6 3.5419 1.4443 0.1238 14 8 4.2250 1.8611 -0.7876 15 7 4.1261 0.9828 1.2472 16 6 5.5861 0.9841 1.3673 17 6 5.9863 0.4128 2.7292 18 6 7.4883 0.4147 2.8529 19 1 8.0966 0.7857 2.0413 20 6 8.0858 -0.0574 4.0024 21 7 7.3451 -0.5087 4.9908 22 14 9.9474 -0.0544 4.1561 23 1 10.3931 1.2318 4.7494 24 1 10.3738 -1.1769 5.0300 25 1 10.5555 -0.2160 2.8108 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 0.1246 2.4479 0.8684 32 1 -1.9626 3.7521 0.8844 33 1 -2.7660 4.8179 -1.1838 34 1 -1.4789 4.5917 -3.2692 35 1 0.5022 2.3771 -4.1946 36 1 0.6873 4.1458 -4.2702 37 1 1.8989 3.1599 -3.4168 38 1 3.5798 0.6492 1.9760 39 1 6.0164 0.3705 0.5757 40 1 5.9572 2.0051 1.2780 41 1 5.5561 1.0260 3.5210 42 1 5.6153 -0.6082 2.8181 43 1 7.7654 -0.8412 5.7993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273053715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = -84.936250 kcal Electronic energy + Delta-G solvation = -22909.758805 eV Core-core repulsion = 19532.919732 eV Total energy + Delta-G solvation = -3376.839073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87142 -40.45110 -38.42690 -36.64365 -35.17048 -34.59875 -33.41342 -31.70662 -31.09292 -28.78421 -27.60882 -26.47970 -24.08861 -23.26418 -22.57046 -22.50207 -21.17871 -19.30892 -18.64526 -18.35943 -17.06144 -16.97582 -16.63256 -16.46637 -16.26212 -16.12808 -15.51530 -15.00835 -14.83426 -14.75718 -14.38347 -14.30139 -14.01998 -13.60775 -13.30936 -13.24910 -13.18039 -13.04527 -12.93425 -12.81230 -12.55095 -12.30933 -12.27483 -12.10108 -11.92942 -11.69475 -11.47874 -11.42262 -10.80148 -10.61552 -10.12291 -9.71815 -9.03328 -8.25246 -6.35347 0.40217 0.50734 1.41344 1.41506 1.43902 1.52549 1.62211 2.38767 2.60496 2.83994 3.09786 3.48445 3.59490 3.70648 3.88832 3.97475 4.16192 4.24434 4.35572 4.43800 4.44762 4.46049 4.50361 4.66232 4.73113 4.77349 4.79069 4.82157 4.98940 4.99564 5.05689 5.19940 5.29680 5.32009 5.43658 5.45025 5.55287 5.56729 5.63121 5.76625 5.88725 6.14589 6.36291 6.53700 6.77422 7.13131 7.33937 8.86462 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029742 B = 0.002816 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.212030 B = 9939.192244 C =10234.701456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.072 3.928 4 H 0.125 0.875 5 O -0.304 6.304 6 C 0.106 3.894 7 C -0.214 4.214 8 C -0.088 4.088 9 C -0.157 4.157 10 C -0.087 4.087 11 C -0.139 4.139 12 C -0.104 4.104 13 C 0.506 3.494 14 O -0.576 6.576 15 N -0.707 5.707 16 C 0.141 3.859 17 C 0.024 3.976 18 C -0.548 4.548 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.268 1.268 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.414 0.586 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.011 0.989 42 H 0.013 0.987 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.483 5.675 -10.051 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.013 3.987 4 H 0.142 0.858 5 O -0.217 6.217 6 C 0.061 3.939 7 C -0.232 4.232 8 C -0.106 4.106 9 C -0.175 4.175 10 C -0.105 4.105 11 C -0.140 4.140 12 C -0.161 4.161 13 C 0.292 3.708 14 O -0.455 6.455 15 N -0.359 5.359 16 C 0.017 3.983 17 C -0.013 4.013 18 C -0.587 4.587 19 H 0.075 0.925 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.787 3.213 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.192 1.192 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.250 0.750 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.031 0.969 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.834 5.858 -10.690 25.006 hybrid contribution 1.098 -0.322 0.754 1.370 sum -20.735 5.536 -9.937 23.651 Atomic orbital electron populations 1.21890 0.92785 1.03326 1.02491 1.22013 0.98618 0.92260 1.04390 1.22411 0.90485 0.96966 0.88875 0.85823 1.86177 1.38196 1.63296 1.34071 1.19196 0.86081 0.93407 0.95224 1.21515 0.98605 1.05790 0.97318 1.21271 0.94846 0.94949 0.99521 1.21409 1.01580 1.01993 0.92489 1.21183 0.92612 0.96934 0.99733 1.19561 0.98246 1.01962 0.94204 1.20594 0.98672 1.02859 0.93979 1.20879 0.90604 0.77225 0.82132 1.90686 1.66315 1.47956 1.40520 1.45999 1.08406 1.63505 1.18036 1.21283 0.78234 0.99797 0.98955 1.19130 0.95791 0.95670 0.90738 1.21459 0.92846 1.42435 1.01920 0.92472 1.25827 1.03344 0.94501 0.95300 1.70038 1.37276 1.42615 1.06486 0.85478 0.79463 0.78003 0.78313 1.19797 1.20424 1.19219 0.90668 0.90645 0.93317 0.91562 0.88064 0.84005 0.83316 0.83342 0.83310 0.91014 0.89953 0.93571 0.74963 0.93439 0.93551 0.97024 0.96887 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.45 71.98 0.61 -1.79 16 2 C -0.13 -2.78 5.61 30.60 0.17 -2.61 16 3 C 0.07 1.87 2.57 29.85 0.08 1.94 16 4 H 0.12 2.54 5.37 -2.39 -0.01 2.53 16 5 O -0.30 -9.05 8.25 -73.45 -0.61 -9.66 16 6 C 0.11 2.62 5.30 22.51 0.12 2.74 16 7 C -0.21 -4.16 7.16 22.37 0.16 -4.00 16 8 C -0.09 -1.36 10.04 22.26 0.22 -1.14 16 9 C -0.16 -2.29 10.04 22.28 0.22 -2.07 16 10 C -0.09 -1.47 9.70 22.25 0.22 -1.26 16 11 C -0.14 -3.15 5.89 -19.77 -0.12 -3.26 16 12 C -0.10 -2.27 9.79 71.24 0.70 -1.57 16 13 C 0.51 17.67 7.18 87.65 0.63 18.30 16 14 O -0.58 -25.77 16.51 15.94 0.26 -25.50 16 15 N -0.71 -24.04 5.46 -463.05 -2.53 -26.57 16 16 C 0.14 6.02 5.61 86.38 0.48 6.51 16 17 C 0.02 1.19 5.09 29.85 0.15 1.35 16 18 C -0.55 -30.40 9.11 25.60 0.23 -30.17 16 19 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 20 C 0.01 0.52 5.46 84.66 0.46 0.98 16 21 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 22 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 0.98 6.80 -2.39 -0.02 0.96 16 28 H 0.05 0.93 6.27 -2.39 -0.01 0.91 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.78 7.77 -2.39 -0.02 1.77 16 31 H 0.14 2.31 4.54 -2.91 -0.01 2.30 16 32 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 37 H 0.05 1.26 7.53 -2.38 -0.02 1.24 16 38 H 0.41 11.41 8.18 -92.71 -0.76 10.65 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.98 353.13 4.03 -66.94 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.25 Total: 18.60 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 4.34 Total: -16.06 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.24 Total: -79.73 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.34 Total: -35.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -70.98 4.03 -66.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273053715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.992 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds