Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46969 * 2 1 4 4 H 1.08998 * 109.47000 * 55.00092 * 3 2 1 5 5 C 1.53002 * 109.46890 * 175.00325 * 3 2 1 6 6 O 1.42902 * 109.46976 * 294.99973 * 3 2 1 7 7 C 1.35713 * 116.99876 * 155.12826 * 6 3 2 8 8 C 1.38992 * 119.90987 * 5.44529 * 7 6 3 9 9 C 1.37709 * 120.08770 * 179.97438 * 8 7 6 10 10 C 1.39729 * 119.90592 * 359.97438 * 9 8 7 11 11 C 1.47604 * 120.08740 * 180.02562 * 10 9 8 12 12 O 1.21594 * 119.99557 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00591 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47108 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47308 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00188 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99668 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00251 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47156 * 59.99638 * 20 18 16 22 22 H 1.48506 * 109.47127 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47175 * 299.99812 * 20 18 16 24 24 C 1.39735 * 119.82990 * 0.27940 * 10 9 8 25 25 C 1.37703 * 119.90634 * 359.43788 * 24 10 9 26 26 H 1.09002 * 109.46687 * 59.99896 * 1 2 3 27 27 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46937 * 300.00407 * 1 2 3 29 29 H 1.08996 * 109.46986 * 240.00074 * 2 1 3 30 30 H 1.08998 * 109.47256 * 119.99635 * 2 1 3 31 31 H 1.09005 * 109.46664 * 299.99667 * 5 3 2 32 32 H 1.08986 * 109.47317 * 59.99679 * 5 3 2 33 33 H 1.08997 * 109.46727 * 180.02562 * 5 3 2 34 34 H 1.08000 * 119.95844 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.04306 * 179.97438 * 9 8 7 36 36 H 0.97005 * 119.99430 * 359.97438 * 13 11 10 37 37 H 1.08990 * 109.47456 * 299.99789 * 14 13 11 38 38 H 1.09007 * 109.47475 * 60.00130 * 14 13 11 39 39 H 1.09007 * 109.46888 * 300.00574 * 15 14 13 40 40 H 1.08998 * 109.46743 * 59.99604 * 15 14 13 41 41 H 0.96997 * 119.99605 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.04523 * 179.70752 * 24 10 9 43 43 H 1.08002 * 119.95331 * 180.25380 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4444 0.1256 6 8 1.6620 2.0814 -1.2211 7 6 1.5548 3.4342 -1.2012 8 6 1.9181 4.1415 -0.0612 9 6 1.8114 5.5142 -0.0372 10 6 1.3376 6.1959 -1.1611 11 6 1.2222 7.6673 -1.1400 12 8 1.5391 8.2877 -0.1434 13 7 0.7645 8.3231 -2.2248 14 6 0.6494 9.7834 -2.2035 15 6 0.1097 10.2721 -3.5492 16 6 -0.0081 11.7743 -3.5276 17 1 0.2734 12.3253 -2.6424 18 6 -0.4762 12.4452 -4.6374 19 7 -0.8194 11.7741 -5.7152 20 14 -0.6229 14.3072 -4.6103 21 1 0.7142 14.9056 -4.3668 22 1 -1.1478 14.7815 -5.9161 23 1 -1.5525 14.7148 -3.5263 24 6 0.9684 5.4807 -2.3034 25 6 1.0836 4.1086 -2.3214 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8532 0.9570 1.0571 32 1 3.9994 0.9054 -0.7160 33 1 3.9281 2.4720 0.1261 34 1 2.2854 3.6139 0.8067 35 1 2.0935 6.0631 0.8491 36 1 0.5113 7.8281 -3.0197 37 1 -0.0328 10.0825 -1.4079 38 1 1.6309 10.2227 -2.0249 39 1 0.7923 9.9729 -4.3447 40 1 -0.8716 9.8328 -3.7283 41 1 -1.1484 12.2461 -6.4961 42 1 0.5973 6.0037 -3.1724 43 1 0.8023 3.5555 -3.2053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273075989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -73.482050 kcal Electronic energy + Delta-G solvation = -22099.751455 eV Core-core repulsion = 18723.409073 eV Total energy + Delta-G solvation = -3376.342381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68433 -39.37354 -37.41685 -34.89243 -34.53224 -32.88989 -31.37021 -30.68020 -30.16791 -29.09015 -25.13211 -24.42811 -23.42709 -22.92849 -21.18450 -20.99233 -20.02489 -18.70420 -17.43962 -16.42844 -16.19398 -15.66003 -15.20037 -15.14960 -14.85996 -14.58937 -14.43269 -14.08135 -13.82062 -13.64251 -13.58647 -13.18718 -13.08738 -12.60110 -12.42985 -12.26816 -12.21337 -11.98824 -11.51033 -11.32031 -11.18597 -11.03794 -10.94771 -10.81740 -10.65025 -10.31476 -9.84325 -9.47956 -9.22161 -9.21634 -8.59427 -8.41800 -8.23189 -6.08533 -4.11360 0.89286 1.20560 2.83967 3.05050 3.32037 3.35721 3.38705 3.69479 3.92598 4.21109 4.42523 4.42914 4.53529 4.64836 4.67391 4.85473 5.01302 5.02206 5.13128 5.13881 5.17873 5.28407 5.32265 5.38623 5.48718 5.52140 5.66061 5.71132 5.85298 5.87688 6.05329 6.14131 6.25390 6.36125 6.41505 6.50919 6.74683 6.91897 7.16449 7.52220 7.62259 7.89550 8.02068 8.28593 8.65139 8.94310 9.53312 11.03061 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038926 B = 0.002350 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.146010 B =11913.474541 C =12317.914291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.183 4.183 6 O -0.305 6.305 7 C 0.152 3.848 8 C -0.222 4.222 9 C -0.021 4.021 10 C -0.167 4.167 11 C 0.551 3.449 12 O -0.552 6.552 13 N -0.717 5.717 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.045 4.045 25 C -0.161 4.161 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.396 0.604 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.263 0.737 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 -25.283 9.953 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.219 6.219 7 C 0.105 3.895 8 C -0.240 4.240 9 C -0.040 4.040 10 C -0.170 4.170 11 C 0.338 3.662 12 O -0.432 6.432 13 N -0.367 5.367 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.064 4.064 25 C -0.179 4.179 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.234 -24.918 10.307 27.469 hybrid contribution -0.150 0.833 -0.319 0.904 sum 5.085 -24.085 9.988 26.565 Atomic orbital electron populations 1.21775 0.94998 1.01955 1.02541 1.21638 0.96958 0.93757 1.03236 1.22568 0.95186 0.94040 0.85994 0.90613 1.22400 0.95076 1.03440 1.03066 1.86077 1.83272 1.16754 1.35784 1.19221 0.93569 0.82467 0.94199 1.21232 1.09059 0.94985 0.98774 1.21059 0.92552 0.92939 0.97462 1.20026 1.07307 0.93751 0.95940 1.18173 0.77762 0.86716 0.83542 1.90739 1.50607 1.68997 1.32820 1.46264 1.64973 1.09787 1.15676 1.21753 1.00782 0.76053 1.01487 1.19329 0.96552 0.96648 0.89989 1.21010 1.43953 0.91326 0.99768 0.92275 1.24999 0.95164 0.98743 0.95406 1.69947 1.43910 1.35788 1.03666 0.86562 0.78567 0.85151 0.77191 1.20108 1.21254 1.20114 1.21213 0.94882 0.93187 0.97137 1.20346 1.05759 0.93759 0.98061 0.91845 0.92392 0.92739 0.90717 0.90029 0.90925 0.91316 0.91528 0.84905 0.84460 0.76897 0.92415 0.92419 0.95904 0.95906 0.92788 0.84601 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.81 37.16 0.36 -0.60 16 2 C -0.12 -0.68 5.64 -26.72 -0.15 -0.83 16 3 C 0.08 0.56 2.22 -26.73 -0.06 0.50 16 4 H 0.08 0.52 6.30 -51.93 -0.33 0.19 16 5 C -0.18 -1.14 9.16 37.16 0.34 -0.80 16 6 O -0.31 -3.01 9.32 -18.84 -0.18 -3.19 16 7 C 0.15 1.66 6.61 -39.02 -0.26 1.40 16 8 C -0.22 -2.38 8.21 -39.50 -0.32 -2.71 16 9 C -0.02 -0.27 9.58 -39.22 -0.38 -0.65 16 10 C -0.17 -2.42 5.87 -104.96 -0.62 -3.03 16 11 C 0.55 9.98 7.76 -12.44 -0.10 9.89 16 12 O -0.55 -11.83 16.34 5.28 0.09 -11.74 16 13 N -0.72 -13.01 5.51 -61.33 -0.34 -13.34 16 14 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.05 -0.55 9.53 -39.22 -0.37 -0.93 16 25 C -0.16 -1.78 9.97 -39.50 -0.39 -2.17 16 26 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.44 8.14 -51.94 -0.42 0.02 16 33 H 0.07 0.47 6.89 -51.93 -0.36 0.12 16 34 H 0.13 1.12 5.40 -52.49 -0.28 0.83 16 35 H 0.14 1.77 7.64 -52.49 -0.40 1.37 16 36 H 0.40 6.18 6.50 -40.82 -0.27 5.92 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.14 1.43 6.39 -52.49 -0.34 1.10 16 43 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -32.20 357.44 -8.41 -40.62 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.57 Total: 1.72 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.52 Total: -10.46 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.40 Total: -38.78 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.09 Total: -14.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.20 -8.41 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273075989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.866 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds