Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46969 * 2 1 4 4 H 1.08998 * 109.47000 * 55.00092 * 3 2 1 5 5 C 1.53002 * 109.46890 * 175.00325 * 3 2 1 6 6 O 1.42902 * 109.46976 * 294.99973 * 3 2 1 7 7 C 1.35713 * 116.99876 * 155.12826 * 6 3 2 8 8 C 1.38992 * 119.90987 * 5.44529 * 7 6 3 9 9 C 1.37709 * 120.08770 * 179.97438 * 8 7 6 10 10 C 1.39729 * 119.90592 * 359.97438 * 9 8 7 11 11 C 1.47604 * 120.08740 * 180.02562 * 10 9 8 12 12 O 1.21594 * 119.99557 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00591 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47108 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47308 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00188 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99668 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00251 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47156 * 59.99638 * 20 18 16 22 22 H 1.48506 * 109.47127 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47175 * 299.99812 * 20 18 16 24 24 C 1.39735 * 119.82990 * 0.27940 * 10 9 8 25 25 C 1.37703 * 119.90634 * 359.43788 * 24 10 9 26 26 H 1.09002 * 109.46687 * 59.99896 * 1 2 3 27 27 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46937 * 300.00407 * 1 2 3 29 29 H 1.08996 * 109.46986 * 240.00074 * 2 1 3 30 30 H 1.08998 * 109.47256 * 119.99635 * 2 1 3 31 31 H 1.09005 * 109.46664 * 299.99667 * 5 3 2 32 32 H 1.08986 * 109.47317 * 59.99679 * 5 3 2 33 33 H 1.08997 * 109.46727 * 180.02562 * 5 3 2 34 34 H 1.08000 * 119.95844 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.04306 * 179.97438 * 9 8 7 36 36 H 0.97005 * 119.99430 * 359.97438 * 13 11 10 37 37 H 1.08990 * 109.47456 * 299.99789 * 14 13 11 38 38 H 1.09007 * 109.47475 * 60.00130 * 14 13 11 39 39 H 1.09007 * 109.46888 * 300.00574 * 15 14 13 40 40 H 1.08998 * 109.46743 * 59.99604 * 15 14 13 41 41 H 0.96997 * 119.99605 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.04523 * 179.70752 * 24 10 9 43 43 H 1.08002 * 119.95331 * 180.25380 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4444 0.1256 6 8 1.6620 2.0814 -1.2211 7 6 1.5548 3.4342 -1.2012 8 6 1.9181 4.1415 -0.0612 9 6 1.8114 5.5142 -0.0372 10 6 1.3376 6.1959 -1.1611 11 6 1.2222 7.6673 -1.1400 12 8 1.5391 8.2877 -0.1434 13 7 0.7645 8.3231 -2.2248 14 6 0.6494 9.7834 -2.2035 15 6 0.1097 10.2721 -3.5492 16 6 -0.0081 11.7743 -3.5276 17 1 0.2734 12.3253 -2.6424 18 6 -0.4762 12.4452 -4.6374 19 7 -0.8194 11.7741 -5.7152 20 14 -0.6229 14.3072 -4.6103 21 1 0.7142 14.9056 -4.3668 22 1 -1.1478 14.7815 -5.9161 23 1 -1.5525 14.7148 -3.5263 24 6 0.9684 5.4807 -2.3034 25 6 1.0836 4.1086 -2.3214 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8532 0.9570 1.0571 32 1 3.9994 0.9054 -0.7160 33 1 3.9281 2.4720 0.1261 34 1 2.2854 3.6139 0.8067 35 1 2.0935 6.0631 0.8491 36 1 0.5113 7.8281 -3.0197 37 1 -0.0328 10.0825 -1.4079 38 1 1.6309 10.2227 -2.0249 39 1 0.7923 9.9729 -4.3447 40 1 -0.8716 9.8328 -3.7283 41 1 -1.1484 12.2461 -6.4961 42 1 0.5973 6.0037 -3.1724 43 1 0.8023 3.5555 -3.2053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273075989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = -92.539581 kcal Electronic energy + Delta-G solvation = -22100.577851 eV Core-core repulsion = 18723.409073 eV Total energy + Delta-G solvation = -3377.168778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59400 -40.62470 -38.41427 -36.63786 -35.15438 -34.85112 -32.40354 -31.93166 -30.79409 -30.56900 -26.90887 -25.23690 -24.21130 -24.07709 -22.79078 -22.00829 -21.19194 -19.55096 -18.73965 -18.38059 -17.23820 -16.62143 -16.50573 -16.46168 -16.18022 -16.02499 -15.39026 -14.92494 -14.87601 -14.79360 -14.47428 -14.30912 -14.27030 -13.91878 -13.52626 -13.24702 -13.20125 -12.94317 -12.80909 -12.63289 -12.54627 -12.24061 -12.00829 -11.98780 -11.69079 -11.61536 -11.48639 -11.46630 -10.96783 -10.60101 -10.13736 -10.09254 -9.26156 -8.23869 -6.34393 -0.14195 0.29099 1.42006 1.44442 1.52391 1.82191 2.13702 2.22313 2.45137 2.81836 3.10703 3.66064 3.75050 3.78488 3.80956 3.96583 4.07454 4.16863 4.30218 4.41458 4.48098 4.48918 4.49860 4.63547 4.68581 4.77715 4.83801 4.93662 4.98116 5.08250 5.10680 5.19117 5.22067 5.24940 5.27360 5.33648 5.41703 5.47870 5.57322 5.61150 5.78193 6.15755 6.37962 6.58549 6.78256 7.20950 7.34668 8.87798 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038926 B = 0.002350 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.146010 B =11913.474541 C =12317.914291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.082 0.918 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.159 3.841 8 C -0.215 4.215 9 C -0.027 4.027 10 C -0.191 4.191 11 C 0.552 3.448 12 O -0.591 6.591 13 N -0.713 5.713 14 C 0.140 3.860 15 C 0.023 3.977 16 C -0.548 4.548 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.269 1.269 24 C -0.041 4.041 25 C -0.164 4.164 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.158 0.842 35 H 0.132 0.868 36 H 0.409 0.591 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.266 0.734 42 H 0.148 0.852 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -26.811 10.448 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.014 3.986 4 H 0.100 0.900 5 C -0.238 4.238 6 O -0.224 6.224 7 C 0.112 3.888 8 C -0.233 4.233 9 C -0.046 4.046 10 C -0.195 4.195 11 C 0.341 3.659 12 O -0.474 6.474 13 N -0.364 5.364 14 C 0.016 3.984 15 C -0.015 4.015 16 C -0.586 4.586 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.194 1.194 24 C -0.060 4.060 25 C -0.182 4.182 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.150 0.850 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.166 0.834 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.528 -26.484 10.794 29.128 hybrid contribution -0.225 1.122 -0.451 1.230 sum 5.303 -25.362 10.343 27.898 Atomic orbital electron populations 1.21785 0.95499 1.02396 1.01722 1.21673 0.96461 0.92854 1.04270 1.22878 0.96002 0.94692 0.85075 0.90032 1.22397 0.94144 1.03082 1.04151 1.86097 1.82916 1.15950 1.37462 1.19368 0.92249 0.83178 0.94005 1.21395 1.08305 0.93977 0.99651 1.21107 0.92674 0.93906 0.96897 1.19779 1.10495 0.91345 0.97831 1.18709 0.76392 0.88263 0.82487 1.90706 1.52362 1.70208 1.34127 1.46062 1.65314 1.08361 1.16642 1.21273 0.99649 0.78238 0.99198 1.19138 0.95555 0.95611 0.91161 1.21432 1.44243 0.92918 1.00047 0.92276 1.25881 0.94625 1.03763 0.94952 1.70052 1.44459 1.37734 1.04271 0.85490 0.78862 0.79128 0.77514 1.19348 1.20549 1.19353 1.21312 0.94298 0.93734 0.96657 1.20572 1.05352 0.93344 0.98937 0.93541 0.91399 0.92647 0.90840 0.87810 0.88796 0.91542 0.92466 0.82490 0.84966 0.75404 0.93371 0.93388 0.97204 0.97193 0.92511 0.83434 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.81 71.98 0.71 -0.94 16 2 C -0.12 -1.02 5.64 30.60 0.17 -0.85 16 3 C 0.07 0.81 2.22 30.60 0.07 0.88 16 4 H 0.08 0.88 6.30 -2.39 -0.02 0.87 16 5 C -0.18 -1.78 9.16 71.98 0.66 -1.12 16 6 O -0.31 -5.46 9.32 -90.35 -0.84 -6.30 16 7 C 0.16 3.18 6.61 22.63 0.15 3.33 16 8 C -0.21 -4.25 8.21 22.33 0.18 -4.07 16 9 C -0.03 -0.68 9.58 22.51 0.22 -0.47 16 10 C -0.19 -5.51 5.87 -20.08 -0.12 -5.63 16 11 C 0.55 20.38 7.76 86.72 0.67 21.06 16 12 O -0.59 -26.08 16.34 -4.01 -0.07 -26.15 16 13 N -0.71 -26.34 5.51 -466.19 -2.57 -28.91 16 14 C 0.14 6.23 5.61 86.38 0.48 6.71 16 15 C 0.02 1.17 5.09 29.85 0.15 1.32 16 16 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C -0.04 -0.96 9.53 22.51 0.21 -0.75 16 25 C -0.16 -3.34 9.97 22.32 0.22 -3.11 16 26 H 0.05 0.64 7.82 -2.39 -0.02 0.62 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.68 6.89 -2.39 -0.02 0.67 16 34 H 0.16 2.26 5.40 -2.91 -0.02 2.25 16 35 H 0.13 3.45 7.64 -2.91 -0.02 3.42 16 36 H 0.41 12.87 6.50 -92.70 -0.60 12.27 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.15 2.98 6.39 -2.91 -0.02 2.96 16 43 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -69.21 357.44 3.72 -65.49 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.40 Total: 17.68 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.48 Total: -13.51 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.28 Total: -83.14 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.91 Total: -32.45 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.21 3.72 -65.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273075989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.052 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds