Wall clock time and date at job start Tue Mar 31 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 H 1.08995 * 109.47219 * 305.69625 * 3 2 1 5 5 C 1.50700 * 109.47188 * 185.69347 * 3 2 1 6 6 H 1.08004 * 119.99872 * 275.00045 * 5 3 2 7 7 C 1.37874 * 120.00023 * 95.00844 * 5 3 2 8 8 N 1.31515 * 119.99837 * 184.83142 * 7 5 3 9 9 Si 1.86792 * 120.00008 * 4.82352 * 7 5 3 10 10 H 1.48499 * 109.46984 * 84.86642 * 9 7 5 11 11 H 1.48503 * 109.47341 * 204.86456 * 9 7 5 12 12 H 1.48494 * 109.47335 * 324.86711 * 9 7 5 13 13 N 1.46506 * 109.47050 * 65.69313 * 3 2 1 14 14 C 1.34773 * 119.99924 * 275.00465 * 13 3 2 15 15 O 1.21283 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00085 * 179.97438 * 14 13 3 17 17 C 1.50693 * 109.46967 * 179.97438 * 16 14 13 18 18 C 1.38288 * 119.97318 * 90.00403 * 17 16 14 19 19 C 1.38247 * 120.10801 * 179.97438 * 18 17 16 20 20 C 1.38164 * 120.06042 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.02755 * 179.97438 * 20 19 18 22 22 C 1.38713 * 119.94080 * 0.02562 * 20 19 18 23 23 O 1.35899 * 120.04923 * 180.02562 * 22 20 19 24 24 C 1.42909 * 116.99525 * 180.02562 * 23 22 20 25 25 C 1.38126 * 119.97172 * 269.72172 * 17 16 14 26 26 H 1.08997 * 109.47041 * 299.99936 * 1 2 3 27 27 H 1.09001 * 109.47136 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.46709 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47706 * 240.00372 * 2 1 3 30 30 H 1.09007 * 109.47543 * 120.00131 * 2 1 3 31 31 H 0.96996 * 120.00005 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00045 * 94.99448 * 13 3 2 33 33 H 1.08999 * 109.46985 * 59.99381 * 16 14 13 34 34 H 1.08997 * 109.47097 * 299.99869 * 16 14 13 35 35 H 1.07990 * 119.94601 * 359.97254 * 18 17 16 36 36 H 1.08005 * 119.96712 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47051 * 89.99692 * 21 20 19 38 38 H 1.08997 * 109.46766 * 209.99493 * 21 20 19 39 39 H 1.08999 * 109.47190 * 329.99878 * 21 20 19 40 40 H 1.08996 * 109.47069 * 60.00383 * 24 23 22 41 41 H 1.09007 * 109.46840 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.46774 * 299.99878 * 24 23 22 43 43 H 1.08001 * 120.02630 * 0.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9850 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1650 1.3334 0.7330 7 6 4.1156 1.5895 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9172 -2.8784 10 1 2.7754 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6667 2.0925 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3342 2.6308 0.4661 16 6 0.0666 3.3268 2.6852 17 6 -1.3322 3.8758 2.5716 18 6 -2.4137 3.0895 2.9243 19 6 -3.6981 3.5904 2.8217 20 6 -3.9043 4.8782 2.3656 21 6 -5.3048 5.4234 2.2534 22 6 -2.8212 5.6685 2.0101 23 8 -3.0214 6.9357 1.5618 24 6 -1.8598 7.6916 1.2132 25 6 -1.5327 5.1658 2.1206 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8251 1.5979 -2.3974 32 1 2.2946 2.1151 1.9978 33 1 0.7604 4.1412 2.8937 34 1 0.1069 2.5989 3.4955 35 1 -2.2547 2.0825 3.2806 36 1 -4.5411 2.9745 3.0982 37 1 -5.5831 5.9056 3.1905 38 1 -5.3474 6.1514 1.4434 39 1 -5.9968 4.6073 2.0454 40 1 -1.3196 7.1809 0.4162 41 1 -2.1600 8.6825 0.8722 42 1 -1.2139 7.7883 2.0860 43 1 -0.6874 5.7809 1.8491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273808298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:27 Heat of formation + Delta-G solvation = -67.682679 kcal Electronic energy + Delta-G solvation = -23419.914306 eV Core-core repulsion = 20043.823404 eV Total energy + Delta-G solvation = -3376.090902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34722 -39.12318 -37.44190 -35.22262 -33.60412 -32.36399 -31.54058 -30.11784 -29.45637 -27.64700 -27.42062 -25.09959 -22.78802 -22.21488 -21.33792 -20.25920 -19.51486 -17.60500 -17.23090 -16.43093 -15.98109 -15.73396 -15.57531 -15.41067 -14.82798 -14.29236 -14.05680 -13.78979 -13.57408 -13.28166 -12.87857 -12.78504 -12.68368 -12.27308 -12.11229 -11.96585 -11.91714 -11.82895 -11.49131 -11.22805 -11.02243 -10.96322 -10.82047 -10.66719 -10.64149 -9.99124 -9.85347 -9.23545 -9.12086 -8.72400 -8.61448 -8.01530 -7.97643 -6.25402 -4.28812 1.35966 1.52707 3.24166 3.25316 3.32153 3.33211 3.40936 3.68788 4.20706 4.31219 4.67473 4.80948 5.00328 5.01494 5.10283 5.11489 5.18894 5.26117 5.42353 5.52797 5.56718 5.60461 5.62623 5.66326 5.67610 5.88580 6.06008 6.09529 6.19305 6.26785 6.35256 6.50591 6.65413 6.68103 6.79181 6.83214 6.98768 7.01596 7.29214 7.36539 7.39585 7.58243 8.13851 8.58297 8.75830 9.02530 9.37326 10.86343 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.004069 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.200365 B = 6879.648990 C = 7419.428328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.050 0.950 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.544 6.544 16 C -0.110 4.110 17 C -0.019 4.019 18 C -0.138 4.138 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.101 4.101 22 C 0.125 3.875 23 O -0.318 6.318 24 C 0.026 3.974 25 C -0.189 4.189 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.268 0.732 32 H 0.392 0.608 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.420 7.680 10.141 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.068 0.932 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.354 5.354 14 C 0.286 3.714 15 O -0.422 6.422 16 C -0.150 4.150 17 C -0.020 4.020 18 C -0.157 4.157 19 C -0.102 4.102 20 C -0.126 4.126 21 C -0.158 4.158 22 C 0.080 3.920 23 O -0.231 6.231 24 C -0.069 4.069 25 C -0.207 4.207 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.970 7.762 9.283 20.037 hybrid contribution 0.393 0.154 -0.569 0.709 sum -15.577 7.916 8.714 19.525 Atomic orbital electron populations 1.21895 0.97378 0.98759 1.02086 1.22069 0.93677 0.99494 1.01142 1.19148 0.95384 0.89076 0.82920 0.93224 1.21026 0.88757 1.51655 0.95428 0.90372 1.24933 0.94853 0.93703 0.98792 1.69882 1.09761 1.48412 1.24493 0.86910 0.81308 0.79583 0.82248 1.19963 1.21204 1.18339 1.46603 1.14446 1.56161 1.18189 1.20298 0.82757 0.79405 0.88926 1.90688 1.50722 1.59547 1.41282 1.20784 0.94557 1.01625 0.98018 1.19089 0.94204 0.92734 0.95942 1.20854 0.92025 0.99623 1.03156 1.20774 0.97018 0.93978 0.98387 1.19178 0.94298 0.94228 1.04863 1.20560 0.92136 1.00929 1.02152 1.18731 0.93159 0.84355 0.95788 1.86016 1.34070 1.23228 1.79802 1.23050 0.87897 0.95670 1.00250 1.21028 0.95708 0.97464 1.06546 0.93094 0.93177 0.95188 0.92201 0.93057 0.92247 0.77445 0.88452 0.88289 0.86106 0.85625 0.91769 0.91415 0.91905 0.92429 0.88437 0.92726 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.57 16 2 C -0.12 -2.69 5.59 -26.73 -0.15 -2.84 16 3 C 0.24 5.53 1.89 -69.08 -0.13 5.40 16 4 H 0.05 1.28 4.73 -51.93 -0.25 1.04 16 5 C -0.53 -14.07 9.05 -34.44 -0.31 -14.38 16 6 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 9 Si 0.87 21.59 26.99 -169.99 -4.59 17.00 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.26 -6.34 6.82 56.52 0.39 -5.96 16 13 N -0.71 -13.65 5.03 -54.93 -0.28 -13.93 16 14 C 0.50 9.21 6.42 -10.99 -0.07 9.14 16 15 O -0.54 -11.98 13.18 5.56 0.07 -11.91 16 16 C -0.11 -1.48 5.83 -29.04 -0.17 -1.65 16 17 C -0.02 -0.27 4.37 -104.65 -0.46 -0.73 16 18 C -0.14 -1.86 9.70 -39.56 -0.38 -2.25 16 19 C -0.08 -1.04 9.70 -39.61 -0.38 -1.43 16 20 C -0.12 -1.64 5.89 -104.47 -0.62 -2.25 16 21 C -0.10 -1.05 9.79 36.01 0.35 -0.70 16 22 C 0.12 1.76 6.66 -39.22 -0.26 1.49 16 23 O -0.32 -4.11 9.54 -19.42 -0.19 -4.29 16 24 C 0.03 0.26 9.81 101.05 0.99 1.25 16 25 C -0.19 -2.71 8.69 -39.43 -0.34 -3.05 16 26 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 27 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.39 6.63 8.59 -40.82 -0.35 6.28 16 33 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 39 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 43 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -32.28 350.56 -7.24 -39.52 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.61 Total: 5.97 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.71 Total: -12.39 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.50 Total: -39.18 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.11 Total: -16.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.59 Total: 17.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.28 -7.24 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273808298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.162 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds