Wall clock time and date at job start Tue Mar 31 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 H 1.08995 * 109.47219 * 305.69625 * 3 2 1 5 5 C 1.50700 * 109.47188 * 185.69347 * 3 2 1 6 6 H 1.08004 * 119.99872 * 275.00045 * 5 3 2 7 7 C 1.37874 * 120.00023 * 95.00844 * 5 3 2 8 8 N 1.31515 * 119.99837 * 184.83142 * 7 5 3 9 9 Si 1.86792 * 120.00008 * 4.82352 * 7 5 3 10 10 H 1.48499 * 109.46984 * 84.86642 * 9 7 5 11 11 H 1.48503 * 109.47341 * 204.86456 * 9 7 5 12 12 H 1.48494 * 109.47335 * 324.86711 * 9 7 5 13 13 N 1.46506 * 109.47050 * 65.69313 * 3 2 1 14 14 C 1.34773 * 119.99924 * 275.00465 * 13 3 2 15 15 O 1.21283 * 120.00248 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00085 * 179.97438 * 14 13 3 17 17 C 1.50693 * 109.46967 * 179.97438 * 16 14 13 18 18 C 1.38288 * 119.97318 * 90.00403 * 17 16 14 19 19 C 1.38247 * 120.10801 * 179.97438 * 18 17 16 20 20 C 1.38164 * 120.06042 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.02755 * 179.97438 * 20 19 18 22 22 C 1.38713 * 119.94080 * 0.02562 * 20 19 18 23 23 O 1.35899 * 120.04923 * 180.02562 * 22 20 19 24 24 C 1.42909 * 116.99525 * 180.02562 * 23 22 20 25 25 C 1.38126 * 119.97172 * 269.72172 * 17 16 14 26 26 H 1.08997 * 109.47041 * 299.99936 * 1 2 3 27 27 H 1.09001 * 109.47136 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.46709 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47706 * 240.00372 * 2 1 3 30 30 H 1.09007 * 109.47543 * 120.00131 * 2 1 3 31 31 H 0.96996 * 120.00005 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00045 * 94.99448 * 13 3 2 33 33 H 1.08999 * 109.46985 * 59.99381 * 16 14 13 34 34 H 1.08997 * 109.47097 * 299.99869 * 16 14 13 35 35 H 1.07990 * 119.94601 * 359.97254 * 18 17 16 36 36 H 1.08005 * 119.96712 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47051 * 89.99692 * 21 20 19 38 38 H 1.08997 * 109.46766 * 209.99493 * 21 20 19 39 39 H 1.08999 * 109.47190 * 329.99878 * 21 20 19 40 40 H 1.08996 * 109.47069 * 60.00383 * 24 23 22 41 41 H 1.09007 * 109.46840 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.46774 * 299.99878 * 24 23 22 43 43 H 1.08001 * 120.02630 * 0.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9850 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1650 1.3334 0.7330 7 6 4.1156 1.5895 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9172 -2.8784 10 1 2.7754 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6667 2.0925 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3342 2.6308 0.4661 16 6 0.0666 3.3268 2.6852 17 6 -1.3322 3.8758 2.5716 18 6 -2.4137 3.0895 2.9243 19 6 -3.6981 3.5904 2.8217 20 6 -3.9043 4.8782 2.3656 21 6 -5.3048 5.4234 2.2534 22 6 -2.8212 5.6685 2.0101 23 8 -3.0214 6.9357 1.5618 24 6 -1.8598 7.6916 1.2132 25 6 -1.5327 5.1658 2.1206 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8251 1.5979 -2.3974 32 1 2.2946 2.1151 1.9978 33 1 0.7604 4.1412 2.8937 34 1 0.1069 2.5989 3.4955 35 1 -2.2547 2.0825 3.2806 36 1 -4.5411 2.9745 3.0982 37 1 -5.5831 5.9056 3.1905 38 1 -5.3474 6.1514 1.4434 39 1 -5.9968 4.6073 2.0454 40 1 -1.3196 7.1809 0.4162 41 1 -2.1600 8.6825 0.8722 42 1 -1.2139 7.7883 2.0860 43 1 -0.6874 5.7809 1.8491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273808298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:27 Heat of formation + Delta-G solvation = -87.975794 kcal Electronic energy + Delta-G solvation = -23420.794282 eV Core-core repulsion = 20043.823404 eV Total energy + Delta-G solvation = -3376.970877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38227 -40.53974 -38.45148 -36.92265 -34.66420 -34.38177 -33.13767 -31.07422 -30.61751 -29.25262 -28.42433 -26.18715 -24.61686 -23.16525 -22.56036 -21.65020 -21.16105 -19.26285 -18.44871 -17.60552 -17.50040 -17.11346 -16.68039 -16.44397 -16.25792 -15.97021 -15.23125 -14.80723 -14.78814 -14.75204 -14.36530 -14.14954 -13.86372 -13.72850 -13.61762 -13.30028 -12.97628 -12.90440 -12.83686 -12.64050 -12.50469 -12.34541 -12.16632 -11.94236 -11.88887 -11.75223 -11.66282 -11.20133 -10.84849 -10.64241 -9.65050 -9.63587 -8.99346 -8.40143 -6.44926 0.35313 0.52969 1.26147 1.31160 1.42142 1.88480 2.25196 2.38398 2.48488 2.88150 3.08331 3.65193 3.87386 4.04800 4.18962 4.24190 4.30687 4.33157 4.33258 4.36475 4.43093 4.58239 4.59644 4.66929 4.68737 4.71996 4.79731 4.84458 4.86017 4.99051 5.11545 5.27108 5.28265 5.33057 5.39071 5.43217 5.55779 5.57261 5.67356 5.82368 5.90051 6.14762 6.44837 6.60897 6.98977 7.21589 7.57223 8.75003 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.004069 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.200365 B = 6879.648990 C = 7419.428328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.026 0.974 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.035 3.965 8 N -0.930 5.930 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.258 1.258 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.581 6.581 16 C -0.097 4.097 17 C -0.039 4.039 18 C -0.148 4.148 19 C -0.086 4.086 20 C -0.137 4.137 21 C -0.098 4.098 22 C 0.107 3.893 23 O -0.328 6.328 24 C 0.021 3.979 25 C -0.204 4.204 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.270 0.730 32 H 0.405 0.595 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.153 0.847 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.241 7.691 11.327 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.044 0.956 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.569 5.569 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.182 1.182 13 N -0.355 5.355 14 C 0.289 3.711 15 O -0.461 6.461 16 C -0.137 4.137 17 C -0.039 4.039 18 C -0.166 4.166 19 C -0.104 4.104 20 C -0.138 4.138 21 C -0.155 4.155 22 C 0.062 3.938 23 O -0.242 6.242 24 C -0.074 4.074 25 C -0.223 4.223 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.141 0.859 42 H 0.083 0.917 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.794 7.782 10.499 22.077 hybrid contribution 0.926 0.190 -0.867 1.283 sum -16.868 7.972 9.632 20.996 Atomic orbital electron populations 1.21753 0.95817 1.00162 1.01168 1.21980 0.94965 0.98080 1.01142 1.18859 0.93046 0.90237 0.84062 0.95590 1.21248 0.90426 1.50091 0.94522 0.92390 1.25552 0.95645 0.94103 1.01247 1.69973 1.11155 1.50557 1.25204 0.86110 0.79953 0.79128 0.79967 1.20227 1.20368 1.18217 1.46346 1.15527 1.56398 1.17233 1.21046 0.81529 0.78369 0.90170 1.90675 1.51644 1.60720 1.43097 1.20750 0.94650 1.02553 0.95719 1.19262 0.94797 0.93001 0.96857 1.21144 0.92258 1.00223 1.03003 1.21128 0.97668 0.94019 0.97608 1.19614 0.95317 0.94556 1.04294 1.20589 0.91022 1.01325 1.02550 1.19010 0.93529 0.85020 0.96280 1.85999 1.35437 1.23019 1.79762 1.23257 0.87464 0.96263 1.00381 1.21199 0.96146 0.97932 1.07026 0.92775 0.95290 0.92554 0.93499 0.91773 0.92088 0.75941 0.86401 0.85154 0.84666 0.82980 0.90461 0.92193 0.90315 0.93553 0.85908 0.91700 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.53 71.98 0.61 -4.43 16 2 C -0.12 -5.15 5.59 30.59 0.17 -4.98 16 3 C 0.24 11.17 1.89 44.25 0.08 11.25 16 4 H 0.03 1.34 4.73 -2.39 -0.01 1.33 16 5 C -0.52 -27.96 9.05 25.60 0.23 -27.73 16 6 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 7 C 0.03 1.96 5.47 84.65 0.46 2.42 16 8 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 9 Si 0.92 44.94 26.99 68.60 1.85 46.80 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.26 -12.39 6.82 99.48 0.68 -11.72 16 13 N -0.71 -26.40 5.03 -446.08 -2.24 -28.65 16 14 C 0.50 17.64 6.42 87.66 0.56 18.20 16 15 O -0.58 -25.09 13.18 -3.04 -0.04 -25.13 16 16 C -0.10 -2.39 5.83 29.10 0.17 -2.22 16 17 C -0.04 -1.04 4.37 -19.88 -0.09 -1.13 16 18 C -0.15 -3.66 9.70 22.28 0.22 -3.45 16 19 C -0.09 -1.97 9.70 22.25 0.22 -1.75 16 20 C -0.14 -3.38 5.89 -19.77 -0.12 -3.49 16 21 C -0.10 -1.86 9.79 71.24 0.70 -1.16 16 22 C 0.11 2.92 6.66 22.51 0.15 3.07 16 23 O -0.33 -8.26 9.54 -92.41 -0.88 -9.14 16 24 C 0.02 0.39 9.81 113.37 1.11 1.50 16 25 C -0.20 -5.68 8.69 22.37 0.19 -5.48 16 26 H 0.05 2.02 5.63 -2.39 -0.01 2.01 16 27 H 0.03 1.21 7.89 -2.39 -0.02 1.19 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.41 13.07 8.59 -92.71 -0.80 12.27 16 33 H 0.12 2.42 8.08 -2.39 -0.02 2.40 16 34 H 0.13 2.39 8.09 -2.39 -0.02 2.37 16 35 H 0.14 2.84 8.06 -2.92 -0.02 2.82 16 36 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.22 7.53 -2.39 -0.02 1.20 16 39 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 40 H 0.05 0.96 7.68 -2.39 -0.02 0.94 16 41 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.06 1.06 7.65 -2.39 -0.02 1.04 16 43 H 0.13 3.30 6.30 -2.91 -0.02 3.28 16 Total: -1.00 -69.83 350.56 3.85 -65.98 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.18 Total: 24.45 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 4.68 Total: -19.39 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.94 Total: -83.57 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.92 Total: -34.27 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.85 Total: 46.80 kcal Total: -69.83 3.85 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273808298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.994 kcal (2) G-P(sol) polarization free energy of solvation -69.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds