Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.08993 * 109.47735 * 54.99554 * 16 14 13 18 18 O 1.42902 * 109.47038 * 174.99957 * 16 14 13 19 19 C 1.53001 * 109.47234 * 294.99276 * 16 14 13 20 20 C 1.52998 * 109.47394 * 175.00359 * 19 16 14 21 21 C 1.50706 * 109.47186 * 180.02562 * 20 19 16 22 22 C 1.38236 * 119.99274 * 269.72361 * 21 20 19 23 23 C 1.38243 * 119.99305 * 179.76348 * 22 21 20 24 24 C 1.38238 * 119.99883 * 0.51463 * 23 22 21 25 25 C 1.38237 * 120.00096 * 359.74164 * 24 23 22 26 26 C 1.38229 * 120.00028 * 89.99968 * 21 20 19 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 29 29 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 0.96702 * 114.00434 * 59.99681 * 18 16 14 35 35 H 1.09001 * 109.47078 * 295.00824 * 19 16 14 36 36 H 1.09008 * 109.46966 * 55.00252 * 19 16 14 37 37 H 1.09002 * 109.46918 * 300.00030 * 20 19 16 38 38 H 1.08994 * 109.47273 * 59.99905 * 20 19 16 39 39 H 1.07991 * 120.00704 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.99747 * 180.23087 * 23 22 21 41 41 H 1.08002 * 119.99888 * 179.72449 * 24 23 22 42 42 H 1.07995 * 119.99477 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.00137 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 1 0.1545 2.6508 -3.4801 18 8 -1.3219 3.7702 -2.5659 19 6 0.9379 4.5662 -2.8816 20 6 0.6197 5.1827 -4.2452 21 6 1.5037 6.3817 -4.4731 22 6 1.0836 7.6362 -4.0724 23 6 1.8966 8.7354 -4.2770 24 6 3.1251 8.5815 -4.8919 25 6 3.5429 7.3277 -5.2973 26 6 2.7322 6.2278 -5.0879 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 -1.4969 4.3939 -1.8480 35 1 0.7588 5.3032 -2.0988 36 1 1.9830 4.2573 -2.8575 37 1 0.7988 4.4456 -5.0279 38 1 -0.4253 5.4915 -4.2693 39 1 0.1221 7.7571 -3.5957 40 1 1.5701 9.7150 -3.9606 41 1 3.7584 9.4409 -5.0557 42 1 4.5025 7.2076 -5.7781 43 1 3.0586 5.2482 -5.4046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273813843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = -86.954410 kcal Electronic energy + Delta-G solvation = -23086.739587 eV Core-core repulsion = 19709.813000 eV Total energy + Delta-G solvation = -3376.926587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72559 -39.18054 -36.72713 -34.95782 -33.93421 -32.43738 -31.18348 -31.00643 -30.01734 -27.38366 -26.07717 -23.25254 -22.69681 -22.61474 -20.94657 -20.41646 -19.38433 -17.78864 -16.86918 -16.22699 -16.06670 -15.68235 -15.32877 -15.02074 -14.96072 -14.25827 -14.07178 -13.54392 -13.41051 -13.26569 -12.92328 -12.79819 -12.65624 -12.37227 -11.86491 -11.52661 -11.46069 -11.30959 -11.25569 -11.15841 -10.98711 -10.86501 -10.83800 -10.43511 -10.31078 -10.17821 -9.63719 -9.07739 -9.04315 -8.96617 -8.65931 -8.50516 -7.86028 -6.14396 -4.24148 1.23165 1.27868 3.22578 3.26745 3.29857 3.31466 3.66019 4.01169 4.34367 4.45720 4.62721 4.70189 4.87347 4.98119 4.99091 5.15925 5.17972 5.23857 5.34087 5.41029 5.51647 5.60382 5.68727 5.88694 5.92775 6.03395 6.14899 6.34305 6.38742 6.38902 6.45503 6.53922 6.65569 6.88973 7.03214 7.17898 7.35101 7.42099 7.58134 7.64258 7.73664 7.88196 8.16182 8.62174 8.74617 9.07623 9.43273 10.90852 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.004125 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.755527 B = 6787.008093 C = 8431.369441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.472 3.528 15 O -0.543 6.543 16 C 0.090 3.910 17 H 0.116 0.884 18 O -0.543 6.543 19 C -0.139 4.139 20 C -0.076 4.076 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.023 0.977 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.380 0.620 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 12.016 -14.332 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.256 3.744 15 O -0.422 6.422 16 C 0.027 3.973 17 H 0.134 0.866 18 O -0.347 6.347 19 C -0.178 4.178 20 C -0.114 4.114 21 C -0.078 4.078 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.229 0.771 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.771 11.480 -13.964 18.288 hybrid contribution 1.541 0.326 0.300 1.604 sum -1.229 11.807 -13.664 18.100 Atomic orbital electron populations 1.21835 0.98310 0.98080 1.01224 1.21932 0.92619 0.99804 1.02284 1.18789 0.94191 0.89213 0.81017 0.93394 1.21226 0.90697 1.39086 1.06306 0.92118 1.24882 0.98573 0.94771 0.95395 1.69895 1.35140 1.37533 1.09343 0.86469 0.84893 0.77663 0.78204 1.20581 1.21050 1.19848 1.46538 1.14643 1.55544 1.18552 1.21215 0.83067 0.80167 0.89968 1.90684 1.51158 1.60113 1.40213 1.21914 0.83095 0.95655 0.96627 0.86595 1.86510 1.24980 1.67017 1.56240 1.22223 1.00690 0.97338 0.97515 1.20577 0.99075 0.94630 0.97094 1.19962 0.95263 0.94917 0.97651 1.21089 1.00015 0.92282 1.00190 1.21146 0.94688 0.98701 0.99264 1.21134 0.96627 0.97396 0.99520 1.21154 0.99611 0.92856 1.00062 1.21106 0.94065 0.98920 0.99416 0.95825 0.93223 0.94269 0.95031 0.88296 0.92547 0.77991 0.77114 0.90875 0.90045 0.90778 0.90153 0.86082 0.86249 0.86357 0.86179 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.78 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.38 7.57 -51.93 -0.39 0.99 16 5 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.88 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.95 4.92 -54.93 -0.27 -14.22 16 14 C 0.47 8.90 5.74 -10.99 -0.06 8.83 16 15 O -0.54 -12.32 13.48 -14.30 -0.19 -12.51 16 16 C 0.09 1.25 3.38 -27.88 -0.09 1.15 16 17 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 18 O -0.54 -7.73 12.53 -55.09 -0.69 -8.42 16 19 C -0.14 -1.64 4.85 -26.73 -0.13 -1.77 16 20 C -0.08 -0.76 5.24 -27.88 -0.15 -0.91 16 21 C -0.08 -0.82 5.13 -104.62 -0.54 -1.36 16 22 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 29 H 0.04 0.86 5.66 -51.93 -0.29 0.57 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 6.62 8.24 -40.82 -0.34 6.29 16 34 H 0.38 4.74 8.79 45.56 0.40 5.14 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.98 7.77 -51.92 -0.40 0.57 16 37 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -30.79 353.78 -9.44 -40.22 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.91 Total: 12.04 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -3.31 Total: -13.93 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.36 Total: -38.10 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.88 Total: -20.94 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.79 -9.44 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.730 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds