Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.08993 * 109.47735 * 54.99554 * 16 14 13 18 18 O 1.42902 * 109.47038 * 174.99957 * 16 14 13 19 19 C 1.53001 * 109.47234 * 294.99276 * 16 14 13 20 20 C 1.52998 * 109.47394 * 175.00359 * 19 16 14 21 21 C 1.50706 * 109.47186 * 180.02562 * 20 19 16 22 22 C 1.38236 * 119.99274 * 269.72361 * 21 20 19 23 23 C 1.38243 * 119.99305 * 179.76348 * 22 21 20 24 24 C 1.38238 * 119.99883 * 0.51463 * 23 22 21 25 25 C 1.38237 * 120.00096 * 359.74164 * 24 23 22 26 26 C 1.38229 * 120.00028 * 89.99968 * 21 20 19 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 29 29 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 0.96702 * 114.00434 * 59.99681 * 18 16 14 35 35 H 1.09001 * 109.47078 * 295.00824 * 19 16 14 36 36 H 1.09008 * 109.46966 * 55.00252 * 19 16 14 37 37 H 1.09002 * 109.46918 * 300.00030 * 20 19 16 38 38 H 1.08994 * 109.47273 * 59.99905 * 20 19 16 39 39 H 1.07991 * 120.00704 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.99747 * 180.23087 * 23 22 21 41 41 H 1.08002 * 119.99888 * 179.72449 * 24 23 22 42 42 H 1.07995 * 119.99477 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.00137 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 1 0.1545 2.6508 -3.4801 18 8 -1.3219 3.7702 -2.5659 19 6 0.9379 4.5662 -2.8816 20 6 0.6197 5.1827 -4.2452 21 6 1.5037 6.3817 -4.4731 22 6 1.0836 7.6362 -4.0724 23 6 1.8966 8.7354 -4.2770 24 6 3.1251 8.5815 -4.8919 25 6 3.5429 7.3277 -5.2973 26 6 2.7322 6.2278 -5.0879 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 -1.4969 4.3939 -1.8480 35 1 0.7588 5.3032 -2.0988 36 1 1.9830 4.2573 -2.8575 37 1 0.7988 4.4456 -5.0279 38 1 -0.4253 5.4915 -4.2693 39 1 0.1221 7.7571 -3.5957 40 1 1.5701 9.7150 -3.9606 41 1 3.7584 9.4409 -5.0557 42 1 4.5025 7.2076 -5.7781 43 1 3.0586 5.2482 -5.4046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273813843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = -105.810678 kcal Electronic energy + Delta-G solvation = -23087.557256 eV Core-core repulsion = 19709.813000 eV Total energy + Delta-G solvation = -3377.744256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06869 -40.07739 -38.04699 -36.69809 -34.91270 -34.22910 -32.92201 -31.71080 -31.11427 -29.08700 -27.34651 -24.99035 -23.81670 -23.40651 -22.07495 -21.71965 -21.12910 -19.35423 -17.83933 -17.64390 -17.48208 -16.84638 -16.80851 -16.13482 -16.11846 -15.72979 -15.39077 -14.84912 -14.60347 -14.26321 -14.21885 -13.85036 -13.81928 -13.68540 -13.46591 -13.18960 -12.89872 -12.88134 -12.70995 -12.61864 -12.15463 -12.09201 -12.06516 -11.95057 -11.62554 -11.59015 -11.50221 -11.05794 -10.56845 -10.32415 -9.76733 -9.64537 -9.51071 -8.15907 -6.33282 0.49592 0.55395 1.44679 1.45119 1.55465 1.78604 2.35099 2.60717 2.93221 3.13746 3.36330 3.71512 3.91427 4.00095 4.13703 4.19489 4.26445 4.37204 4.46034 4.48190 4.54835 4.56467 4.70412 4.74929 4.76369 4.82894 5.05830 5.07017 5.16977 5.24766 5.25743 5.32308 5.43175 5.55695 5.62375 5.63122 5.67863 5.78974 5.79416 5.91866 6.17119 6.18960 6.58336 6.75202 6.99458 7.33894 7.56744 8.89335 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.004125 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.755527 B = 6787.008093 C = 8431.369441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.699 5.699 14 C 0.467 3.533 15 O -0.585 6.585 16 C 0.107 3.893 17 H 0.141 0.859 18 O -0.548 6.548 19 C -0.129 4.129 20 C -0.067 4.067 21 C -0.092 4.092 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.130 4.130 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.387 0.613 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 12.621 -16.466 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.350 5.350 14 C 0.254 3.746 15 O -0.467 6.467 16 C 0.044 3.956 17 H 0.158 0.842 18 O -0.353 6.353 19 C -0.167 4.167 20 C -0.104 4.104 21 C -0.092 4.092 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.148 4.148 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.737 12.106 -16.143 20.252 hybrid contribution 1.179 0.197 0.977 1.544 sum -0.558 12.303 -15.166 19.536 Atomic orbital electron populations 1.21670 0.97097 0.99101 1.00147 1.21790 0.93602 0.99328 1.01336 1.18348 0.93600 0.89108 0.81538 0.98570 1.21584 0.91431 1.38813 1.06661 0.90940 1.25749 1.03148 0.94403 0.95082 1.70050 1.37041 1.38400 1.09896 0.85412 0.79340 0.77349 0.78648 1.20552 1.21072 1.18333 1.46288 1.15647 1.55519 1.17503 1.22202 0.81937 0.79219 0.91283 1.90668 1.52235 1.61442 1.42306 1.21904 0.83265 0.96460 0.93949 0.84158 1.86498 1.25144 1.67236 1.56472 1.22122 1.00025 0.96069 0.98514 1.20487 0.99100 0.94733 0.96058 1.20073 0.95662 0.95149 0.98282 1.21327 1.00651 0.92615 1.00480 1.21441 0.94833 0.99410 0.99168 1.21458 0.96846 0.98124 0.99059 1.21458 1.00349 0.92898 1.00059 1.21357 0.94134 0.99777 0.99530 0.93640 0.95729 0.93818 0.93918 0.91092 0.92656 0.76109 0.76313 0.91857 0.90034 0.89375 0.89951 0.85350 0.84616 0.84487 0.84528 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.96 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.28 13.96 2.24 44.25 0.10 14.06 16 4 H 0.00 -0.22 7.57 -2.39 -0.02 -0.23 16 5 C -0.55 -28.33 8.73 25.60 0.22 -28.10 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -52.07 11.29 21.45 0.24 -51.82 16 9 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 13 N -0.70 -27.41 4.92 -446.09 -2.19 -29.60 16 14 C 0.47 17.41 5.74 87.66 0.50 17.91 16 15 O -0.59 -27.04 13.48 15.95 0.21 -26.82 16 16 C 0.11 2.76 3.38 29.85 0.10 2.86 16 17 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 18 O -0.55 -14.72 12.53 -129.99 -1.63 -16.35 16 19 C -0.13 -2.80 4.85 30.59 0.15 -2.65 16 20 C -0.07 -1.18 5.24 29.85 0.16 -1.02 16 21 C -0.09 -1.78 5.13 -19.87 -0.10 -1.88 16 22 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 23 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 24 C -0.14 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 26 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 27 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 29 H 0.04 1.91 5.66 -2.39 -0.01 1.90 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.40 13.17 8.24 -92.71 -0.76 12.41 16 34 H 0.39 9.31 8.79 -74.06 -0.65 8.66 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.79 7.77 -2.38 -0.02 1.77 16 37 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 38 H 0.08 1.44 7.76 -2.39 -0.02 1.42 16 39 H 0.13 2.14 8.06 -2.92 -0.02 2.12 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -67.27 353.78 1.72 -65.55 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.40 Total: 34.54 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 3.46 Total: -19.06 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.95 Total: -81.43 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.41 Total: -43.18 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -67.27 1.72 -65.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.260 kcal (2) G-P(sol) polarization free energy of solvation -67.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds