Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47370 * 55.00440 * 16 14 13 18 18 O 1.42897 * 109.47436 * 174.99877 * 16 14 13 19 19 C 1.52997 * 109.47331 * 295.00215 * 16 14 13 20 20 C 1.52998 * 109.47249 * 175.00063 * 19 16 14 21 21 C 1.50706 * 109.47342 * 179.97438 * 20 19 16 22 22 C 1.38231 * 119.99892 * 269.73024 * 21 20 19 23 23 C 1.38241 * 119.99779 * 179.76569 * 22 21 20 24 24 C 1.38234 * 119.99778 * 0.50339 * 23 22 21 25 25 C 1.38230 * 120.00282 * 359.74803 * 24 23 22 26 26 C 1.38234 * 119.99801 * 89.99933 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 0.96706 * 113.99695 * 59.99727 * 18 16 14 35 35 H 1.09003 * 109.46880 * 294.99760 * 19 16 14 36 36 H 1.08998 * 109.47338 * 54.99736 * 19 16 14 37 37 H 1.08996 * 109.47510 * 299.99916 * 20 19 16 38 38 H 1.09003 * 109.47077 * 60.00078 * 20 19 16 39 39 H 1.08003 * 120.00061 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.99779 * 180.23258 * 23 22 21 41 41 H 1.08001 * 119.99510 * 179.72715 * 24 23 22 42 42 H 1.07997 * 120.00112 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00388 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.7772 4.0940 2.9141 18 8 -1.2408 3.9577 2.4926 19 6 -0.0410 2.2955 3.7724 20 6 -0.3234 2.9952 5.1035 21 6 -0.4002 1.9687 6.2042 22 6 -1.6130 1.3872 6.5235 23 6 -1.6826 0.4421 7.5300 24 6 -0.5413 0.0861 8.2240 25 6 0.6705 0.6714 7.9082 26 6 0.7411 1.6128 6.8982 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 -1.9500 3.3427 2.2606 35 1 -0.8427 1.5894 3.5559 36 1 0.9066 1.7608 3.8369 37 1 0.4782 3.7013 5.3200 38 1 -1.2711 3.5298 5.0390 39 1 -2.5055 1.6688 5.9845 40 1 -2.6294 -0.0150 7.7769 41 1 -0.5965 -0.6490 9.0132 42 1 1.5621 0.3937 8.4507 43 1 1.6877 2.0705 6.6520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273813844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = -86.786080 kcal Electronic energy + Delta-G solvation = -23178.076273 eV Core-core repulsion = 19801.156985 eV Total energy + Delta-G solvation = -3376.919287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74377 -39.19478 -36.72289 -34.96842 -33.94155 -32.43663 -31.17618 -31.02442 -30.07753 -27.37667 -26.08057 -23.23003 -22.71791 -22.67760 -20.96279 -20.41589 -19.38611 -17.78273 -16.88528 -16.23969 -16.15897 -15.64614 -15.35862 -15.01675 -14.85010 -14.24210 -14.14227 -13.57197 -13.50125 -13.23761 -12.98768 -12.84324 -12.68159 -12.20118 -11.92079 -11.64954 -11.40725 -11.32406 -11.24654 -11.16334 -11.01994 -10.86516 -10.84717 -10.44840 -10.31891 -10.20076 -9.65753 -9.08590 -9.06214 -8.97749 -8.66343 -8.50670 -7.86229 -6.14069 -4.23893 1.21297 1.25952 3.23911 3.27143 3.29746 3.30819 3.64197 4.00806 4.35109 4.44921 4.61289 4.68551 4.85543 4.96396 4.97459 5.15487 5.16805 5.22907 5.33179 5.39382 5.50533 5.59365 5.67757 5.87005 5.90805 6.01778 6.12555 6.32500 6.35461 6.36902 6.41259 6.52239 6.61961 6.87119 6.99714 7.15706 7.33156 7.41400 7.57105 7.64102 7.73537 7.87888 8.15690 8.62173 8.74692 9.07623 9.43432 10.91179 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003709 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.224534 B = 7547.509708 C = 8286.624170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.472 3.528 15 O -0.543 6.543 16 C 0.089 3.911 17 H 0.117 0.883 18 O -0.542 6.542 19 C -0.139 4.139 20 C -0.077 4.077 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.380 0.620 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 1.169 18.569 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.256 3.744 15 O -0.422 6.422 16 C 0.027 3.973 17 H 0.135 0.865 18 O -0.347 6.347 19 C -0.177 4.177 20 C -0.114 4.114 21 C -0.078 4.078 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.228 0.772 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.028 1.576 17.825 19.225 hybrid contribution 1.101 -0.697 0.121 1.308 sum -5.928 0.879 17.946 18.920 Atomic orbital electron populations 1.21835 0.98437 0.98006 1.01098 1.21925 0.92533 0.99823 1.02289 1.18786 0.94206 0.89159 0.81060 0.93358 1.21194 0.90709 1.39171 1.06339 0.92145 1.24888 0.98612 0.94773 0.95368 1.69885 1.35238 1.37510 1.09310 0.86517 0.84847 0.78328 0.77466 1.20157 1.21118 1.20173 1.46537 1.14653 1.55582 1.18504 1.21208 0.83329 0.79836 0.90024 1.90682 1.51604 1.59540 1.40328 1.21922 0.87534 0.95874 0.92016 0.86503 1.86517 1.17358 1.38586 1.92233 1.22216 1.03850 0.98052 0.93583 1.20579 1.03553 0.95772 0.91501 1.19966 0.93336 0.97705 0.96790 1.21091 0.97510 0.97164 0.97812 1.21146 0.98437 0.97805 0.96413 1.21132 0.93005 1.00315 1.00225 1.21156 0.97776 0.96966 0.97794 1.21112 0.98140 0.98109 0.96161 0.93177 0.94441 0.95856 0.95056 0.88287 0.92488 0.77997 0.77168 0.90935 0.90135 0.90726 0.90136 0.86084 0.86246 0.86354 0.86172 0.85937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.04 5.45 -26.74 -0.15 -3.18 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.55 11.30 55.43 0.63 -23.92 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 N -0.70 -13.96 4.92 -54.94 -0.27 -14.23 16 14 C 0.47 8.91 5.74 -10.99 -0.06 8.84 16 15 O -0.54 -12.33 13.46 -14.30 -0.19 -12.52 16 16 C 0.09 1.24 3.38 -27.89 -0.09 1.15 16 17 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 18 O -0.54 -7.75 12.53 -55.09 -0.69 -8.44 16 19 C -0.14 -1.60 4.85 -26.73 -0.13 -1.73 16 20 C -0.08 -0.76 5.24 -27.88 -0.15 -0.90 16 21 C -0.08 -0.81 5.13 -104.62 -0.54 -1.34 16 22 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 28 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 6.62 8.24 -40.82 -0.34 6.29 16 34 H 0.38 4.73 8.79 45.56 0.40 5.13 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.94 7.77 -51.93 -0.40 0.53 16 37 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.08 0.79 7.76 -51.93 -0.40 0.38 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -30.80 353.75 -9.44 -40.24 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.91 Total: 11.78 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -3.31 Total: -13.64 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.36 Total: -38.15 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.88 Total: -20.96 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.80 -9.44 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.545 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds