Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47370 * 55.00440 * 16 14 13 18 18 O 1.42897 * 109.47436 * 174.99877 * 16 14 13 19 19 C 1.52997 * 109.47331 * 295.00215 * 16 14 13 20 20 C 1.52998 * 109.47249 * 175.00063 * 19 16 14 21 21 C 1.50706 * 109.47342 * 179.97438 * 20 19 16 22 22 C 1.38231 * 119.99892 * 269.73024 * 21 20 19 23 23 C 1.38241 * 119.99779 * 179.76569 * 22 21 20 24 24 C 1.38234 * 119.99778 * 0.50339 * 23 22 21 25 25 C 1.38230 * 120.00282 * 359.74803 * 24 23 22 26 26 C 1.38234 * 119.99801 * 89.99933 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 0.96706 * 113.99695 * 59.99727 * 18 16 14 35 35 H 1.09003 * 109.46880 * 294.99760 * 19 16 14 36 36 H 1.08998 * 109.47338 * 54.99736 * 19 16 14 37 37 H 1.08996 * 109.47510 * 299.99916 * 20 19 16 38 38 H 1.09003 * 109.47077 * 60.00078 * 20 19 16 39 39 H 1.08003 * 120.00061 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.99779 * 180.23258 * 23 22 21 41 41 H 1.08001 * 119.99510 * 179.72715 * 24 23 22 42 42 H 1.07997 * 120.00112 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00388 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.7772 4.0940 2.9141 18 8 -1.2408 3.9577 2.4926 19 6 -0.0410 2.2955 3.7724 20 6 -0.3234 2.9952 5.1035 21 6 -0.4002 1.9687 6.2042 22 6 -1.6130 1.3872 6.5235 23 6 -1.6826 0.4421 7.5300 24 6 -0.5413 0.0861 8.2240 25 6 0.6705 0.6714 7.9082 26 6 0.7411 1.6128 6.8982 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 -1.9500 3.3427 2.2606 35 1 -0.8427 1.5894 3.5559 36 1 0.9066 1.7608 3.8369 37 1 0.4782 3.7013 5.3200 38 1 -1.2711 3.5298 5.0390 39 1 -2.5055 1.6688 5.9845 40 1 -2.6294 -0.0150 7.7769 41 1 -0.5965 -0.6490 9.0132 42 1 1.5621 0.3937 8.4507 43 1 1.6877 2.0705 6.6520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273813844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = -105.709211 kcal Electronic energy + Delta-G solvation = -23178.896841 eV Core-core repulsion = 19801.156985 eV Total energy + Delta-G solvation = -3377.739856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08222 -40.07197 -38.03830 -36.70458 -34.90825 -34.22675 -32.91525 -31.70414 -31.14614 -29.06254 -27.34654 -24.97384 -23.84762 -23.39927 -22.06537 -21.71611 -21.12478 -19.34365 -17.87601 -17.65564 -17.52012 -16.88899 -16.65436 -16.17428 -16.03064 -15.63526 -15.54552 -14.95093 -14.60427 -14.25944 -14.10003 -13.93909 -13.71818 -13.65000 -13.49859 -13.19098 -12.97070 -12.85669 -12.66251 -12.62694 -12.17464 -12.10841 -12.02661 -11.95116 -11.64963 -11.60449 -11.47498 -11.06327 -10.55874 -10.32553 -9.76104 -9.63720 -9.51302 -8.15858 -6.33472 0.50193 0.56013 1.45105 1.46708 1.54366 1.78559 2.35069 2.60729 2.93792 3.13527 3.36302 3.71387 3.91650 4.00605 4.14414 4.20098 4.26750 4.37761 4.46112 4.48588 4.54736 4.56264 4.71028 4.74510 4.76789 4.83344 5.05262 5.07527 5.17243 5.24692 5.26445 5.32704 5.43015 5.55691 5.62035 5.63818 5.68588 5.79069 5.79990 5.92174 6.17132 6.19518 6.58847 6.74824 6.99453 7.33676 7.56591 8.89121 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003709 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.224534 B = 7547.509708 C = 8286.624170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.699 5.699 14 C 0.467 3.533 15 O -0.585 6.585 16 C 0.106 3.894 17 H 0.138 0.862 18 O -0.548 6.548 19 C -0.128 4.128 20 C -0.067 4.067 21 C -0.091 4.091 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.130 4.130 27 H 0.023 0.977 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.388 0.612 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 1.217 20.919 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.350 5.350 14 C 0.254 3.746 15 O -0.466 6.466 16 C 0.043 3.957 17 H 0.156 0.844 18 O -0.354 6.354 19 C -0.166 4.166 20 C -0.105 4.105 21 C -0.091 4.091 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.148 4.148 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.266 1.636 20.223 21.235 hybrid contribution 0.798 -0.706 -0.597 1.221 sum -5.467 0.930 19.626 20.395 Atomic orbital electron populations 1.21675 0.96990 0.99086 1.00252 1.21765 0.93742 0.99149 1.01246 1.18346 0.93583 0.89162 0.81517 0.98705 1.21574 0.91504 1.38947 1.06733 0.90924 1.25771 1.03257 0.94392 0.95048 1.70046 1.37129 1.38364 1.09838 0.85447 0.79198 0.78443 0.77548 1.18825 1.21336 1.19681 1.46289 1.15647 1.55582 1.17442 1.22197 0.82207 0.78873 0.91352 1.90667 1.52647 1.60929 1.42393 1.21909 0.87779 0.96469 0.89527 0.84426 1.86505 1.17618 1.39207 1.92087 1.22112 1.03783 0.97207 0.93468 1.20489 1.04082 0.95676 0.90218 1.20059 0.93684 0.98143 0.97233 1.21322 0.97882 0.97508 0.98287 1.21439 0.99416 0.97718 0.96240 1.21453 0.92894 1.00533 1.00572 1.21454 0.98644 0.96825 0.97831 1.21353 0.98576 0.98451 0.96421 0.95772 0.93470 0.93690 0.94009 0.91196 0.92647 0.76111 0.76291 0.91557 0.89920 0.89524 0.90001 0.85334 0.84608 0.84497 0.84550 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.66 16 3 C 0.28 13.98 2.24 44.24 0.10 14.08 16 4 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -52.21 11.30 21.45 0.24 -51.96 16 9 Si 0.97 41.63 29.54 68.60 2.03 43.65 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 N -0.70 -27.45 4.92 -446.11 -2.20 -29.65 16 14 C 0.47 17.43 5.74 87.66 0.50 17.93 16 15 O -0.59 -27.03 13.46 15.97 0.21 -26.82 16 16 C 0.11 2.74 3.38 29.85 0.10 2.84 16 17 H 0.14 3.06 8.14 -2.38 -0.02 3.04 16 18 O -0.55 -14.82 12.53 -129.99 -1.63 -16.45 16 19 C -0.13 -2.66 4.85 30.59 0.15 -2.52 16 20 C -0.07 -1.17 5.24 29.85 0.16 -1.01 16 21 C -0.09 -1.71 5.13 -19.87 -0.10 -1.82 16 22 C -0.13 -2.43 9.70 22.27 0.22 -2.22 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 24 C -0.14 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 27 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 28 H 0.05 1.96 5.64 -2.39 -0.01 1.95 16 29 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 3.84 5.95 -2.39 -0.01 3.82 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.40 13.19 8.24 -92.71 -0.76 12.42 16 34 H 0.39 9.23 8.79 -74.05 -0.65 8.58 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.72 7.77 -2.39 -0.02 1.70 16 37 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 38 H 0.08 1.41 7.76 -2.39 -0.02 1.39 16 39 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -67.50 353.75 1.72 -65.79 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.40 Total: 33.83 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.46 Total: -18.39 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.95 Total: -81.61 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.41 Total: -43.26 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -67.50 1.72 -65.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.920 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds