Wall clock time and date at job start Tue Mar 31 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.47411 * 304.99515 * 16 14 13 18 18 O 1.42902 * 109.47153 * 185.00104 * 16 14 13 19 19 C 1.53002 * 109.47149 * 64.99716 * 16 14 13 20 20 C 1.52994 * 109.47207 * 184.99803 * 19 16 14 21 21 C 1.50699 * 109.47141 * 180.02562 * 20 19 16 22 22 C 1.38235 * 120.00133 * 269.72363 * 21 20 19 23 23 C 1.38238 * 120.00046 * 179.76088 * 22 21 20 24 24 C 1.38235 * 119.99725 * 0.51890 * 23 22 21 25 25 C 1.38237 * 120.00046 * 359.74055 * 24 23 22 26 26 C 1.38235 * 119.99783 * 90.00342 * 21 20 19 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 0.96698 * 113.99894 * 299.99543 * 18 16 14 35 35 H 1.08997 * 109.47058 * 305.00173 * 19 16 14 36 36 H 1.09002 * 109.46850 * 65.00545 * 19 16 14 37 37 H 1.09005 * 109.47971 * 300.00417 * 20 19 16 38 38 H 1.09008 * 109.47201 * 60.00265 * 20 19 16 39 39 H 1.07997 * 120.00051 * 0.02562 * 22 21 20 40 40 H 1.08000 * 120.00014 * 180.23414 * 23 22 21 41 41 H 1.08000 * 119.99981 * 179.71965 * 24 23 22 42 42 H 1.08004 * 119.99735 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99979 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.7774 4.0955 -2.9126 18 8 -1.2407 3.9586 -2.4918 19 6 -0.0403 2.2975 -3.7728 20 6 -0.3223 2.9982 -5.1033 21 6 -0.3987 1.9726 -6.2048 22 6 0.7418 1.6216 -6.9027 23 6 0.6727 0.6772 -7.9098 24 6 -0.5389 0.0918 -8.2263 25 6 -1.6804 0.4468 -7.5320 26 6 -1.6103 1.3872 -6.5213 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 -1.9499 3.3433 -2.2607 35 1 0.9074 1.7630 -3.8373 36 1 -0.8420 1.5912 -3.5571 37 1 -1.2701 3.5329 -5.0388 38 1 0.4793 3.7047 -5.3190 39 1 1.6876 2.0820 -6.6582 40 1 1.5644 0.4002 -8.4525 41 1 -0.5938 -0.6427 -9.0161 42 1 -2.6271 -0.0104 -7.7796 43 1 -2.5022 1.6651 -5.9794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273813846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:47 Heat of formation + Delta-G solvation = -86.851138 kcal Electronic energy + Delta-G solvation = -23177.738370 eV Core-core repulsion = 19800.816262 eV Total energy + Delta-G solvation = -3376.922109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74336 -39.19437 -36.72278 -34.96876 -33.94192 -32.43836 -31.17713 -31.02470 -30.07748 -27.37748 -26.08126 -23.23115 -22.71928 -22.67656 -20.96263 -20.41615 -19.38660 -17.78292 -16.88542 -16.24014 -16.16045 -15.64683 -15.35955 -15.01801 -14.85033 -14.24053 -14.14039 -13.57178 -13.50030 -13.23738 -12.98820 -12.84386 -12.68574 -12.20103 -11.92133 -11.65145 -11.40947 -11.32622 -11.25045 -11.16535 -10.99415 -10.87060 -10.86489 -10.44556 -10.31235 -10.20399 -9.65463 -9.08249 -9.06236 -8.97845 -8.66404 -8.50781 -7.86299 -6.14367 -4.24017 1.21275 1.25968 3.22939 3.27024 3.30064 3.31575 3.64178 4.00786 4.34981 4.44870 4.61294 4.68516 4.85536 4.96397 4.97438 5.15466 5.16734 5.22928 5.33148 5.39372 5.50539 5.59311 5.67739 5.87014 5.90802 6.01774 6.12528 6.32507 6.35433 6.36898 6.41137 6.52229 6.61894 6.87117 6.99663 7.15638 7.33115 7.41360 7.57106 7.64152 7.73473 7.87806 8.15563 8.62153 8.74747 9.07615 9.43358 10.90934 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.003709 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.497046 B = 7548.025002 C = 8287.074792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.472 3.528 15 O -0.543 6.543 16 C 0.089 3.911 17 H 0.117 0.883 18 O -0.542 6.542 19 C -0.139 4.139 20 C -0.077 4.077 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.120 4.120 26 C -0.118 4.118 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.380 0.620 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 1.181 -18.585 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.256 3.744 15 O -0.422 6.422 16 C 0.027 3.973 17 H 0.135 0.865 18 O -0.347 6.347 19 C -0.177 4.177 20 C -0.114 4.114 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.228 0.772 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.027 1.587 -17.847 19.246 hybrid contribution 1.096 -0.695 -0.106 1.302 sum -5.931 0.892 -17.954 18.929 Atomic orbital electron populations 1.21835 0.98437 0.98007 1.01096 1.21924 0.92534 0.99820 1.02289 1.18792 0.94229 0.89164 0.81062 0.93358 1.21230 0.90708 1.39067 1.06334 0.92097 1.24887 0.98620 0.94773 0.95388 1.69894 1.35147 1.37582 1.09301 0.86458 0.84843 0.77665 0.78199 1.20559 1.21064 1.19845 1.46536 1.14643 1.55592 1.18503 1.21210 0.83328 0.79837 0.90026 1.90683 1.51623 1.59555 1.40295 1.21924 0.87532 0.95875 0.92012 0.86499 1.86517 1.17346 1.38569 1.92261 1.22216 1.03850 0.98055 0.93581 1.20580 1.03553 0.95778 0.91498 1.19966 0.93355 0.97699 0.96773 1.21113 0.98141 0.98095 0.96178 1.21157 0.97778 0.96926 0.97829 1.21134 0.92994 1.00320 1.00230 1.21146 0.98435 0.97850 0.96372 1.21088 0.97519 0.97188 0.97780 0.93170 0.95855 0.94449 0.88285 0.95053 0.92550 0.77993 0.77171 0.90133 0.90935 0.90137 0.90726 0.85938 0.86171 0.86353 0.86247 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.96 4.92 -54.93 -0.27 -14.23 16 14 C 0.47 8.91 5.73 -10.99 -0.06 8.84 16 15 O -0.54 -12.33 13.46 -14.31 -0.19 -12.52 16 16 C 0.09 1.24 3.38 -27.88 -0.09 1.15 16 17 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 18 O -0.54 -7.75 12.53 -55.09 -0.69 -8.44 16 19 C -0.14 -1.60 4.85 -26.73 -0.13 -1.73 16 20 C -0.08 -0.76 5.24 -27.89 -0.15 -0.90 16 21 C -0.08 -0.81 5.13 -104.62 -0.54 -1.34 16 22 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.78 5.65 -51.93 -0.29 0.48 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 6.63 8.24 -40.82 -0.34 6.29 16 34 H 0.38 4.73 8.79 45.56 0.40 5.13 16 35 H 0.08 0.94 7.77 -51.93 -0.40 0.53 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.79 7.77 -51.93 -0.40 0.38 16 38 H 0.07 0.67 8.08 -51.92 -0.42 0.25 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -30.81 353.75 -9.44 -40.25 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.91 Total: 11.75 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -3.31 Total: -13.63 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.36 Total: -38.14 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.88 Total: -20.96 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.81 -9.44 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.598 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds