Wall clock time and date at job start Tue Mar 31 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.47411 * 304.99515 * 16 14 13 18 18 O 1.42902 * 109.47153 * 185.00104 * 16 14 13 19 19 C 1.53002 * 109.47149 * 64.99716 * 16 14 13 20 20 C 1.52994 * 109.47207 * 184.99803 * 19 16 14 21 21 C 1.50699 * 109.47141 * 180.02562 * 20 19 16 22 22 C 1.38235 * 120.00133 * 269.72363 * 21 20 19 23 23 C 1.38238 * 120.00046 * 179.76088 * 22 21 20 24 24 C 1.38235 * 119.99725 * 0.51890 * 23 22 21 25 25 C 1.38237 * 120.00046 * 359.74055 * 24 23 22 26 26 C 1.38235 * 119.99783 * 90.00342 * 21 20 19 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 0.96698 * 113.99894 * 299.99543 * 18 16 14 35 35 H 1.08997 * 109.47058 * 305.00173 * 19 16 14 36 36 H 1.09002 * 109.46850 * 65.00545 * 19 16 14 37 37 H 1.09005 * 109.47971 * 300.00417 * 20 19 16 38 38 H 1.09008 * 109.47201 * 60.00265 * 20 19 16 39 39 H 1.07997 * 120.00051 * 0.02562 * 22 21 20 40 40 H 1.08000 * 120.00014 * 180.23414 * 23 22 21 41 41 H 1.08000 * 119.99981 * 179.71965 * 24 23 22 42 42 H 1.08004 * 119.99735 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99979 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.7774 4.0955 -2.9126 18 8 -1.2407 3.9586 -2.4918 19 6 -0.0403 2.2975 -3.7728 20 6 -0.3223 2.9982 -5.1033 21 6 -0.3987 1.9726 -6.2048 22 6 0.7418 1.6216 -6.9027 23 6 0.6727 0.6772 -7.9098 24 6 -0.5389 0.0918 -8.2263 25 6 -1.6804 0.4468 -7.5320 26 6 -1.6103 1.3872 -6.5213 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 -1.9499 3.3433 -2.2607 35 1 0.9074 1.7630 -3.8373 36 1 -0.8420 1.5912 -3.5571 37 1 -1.2701 3.5329 -5.0388 38 1 0.4793 3.7047 -5.3190 39 1 1.6876 2.0820 -6.6582 40 1 1.5644 0.4002 -8.4525 41 1 -0.5938 -0.6427 -9.0161 42 1 -2.6271 -0.0104 -7.7796 43 1 -2.5022 1.6651 -5.9794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273813846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:47 Heat of formation + Delta-G solvation = -105.784068 kcal Electronic energy + Delta-G solvation = -23178.559364 eV Core-core repulsion = 19800.816262 eV Total energy + Delta-G solvation = -3377.743102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08121 -40.07159 -38.03794 -36.70461 -34.90857 -34.22807 -32.91546 -31.70415 -31.14584 -29.06343 -27.34679 -24.97499 -23.84766 -23.39862 -22.06544 -21.71567 -21.12464 -19.34412 -17.87841 -17.65624 -17.51985 -16.88993 -16.65326 -16.17288 -16.03028 -15.63393 -15.54485 -14.95100 -14.60927 -14.25884 -14.09870 -13.94110 -13.71858 -13.64900 -13.50088 -13.20000 -12.96135 -12.83915 -12.69880 -12.63172 -12.14987 -12.10609 -12.02695 -11.95142 -11.64862 -11.60325 -11.47447 -11.05725 -10.56653 -10.32593 -9.76105 -9.63733 -9.51241 -8.16120 -6.33538 0.50198 0.56050 1.44923 1.45270 1.55723 1.78547 2.34973 2.60661 2.93811 3.13493 3.36290 3.71393 3.91637 4.00631 4.14446 4.20121 4.26767 4.37786 4.46175 4.48650 4.54694 4.56194 4.71040 4.74521 4.76822 4.83340 5.05286 5.07538 5.17266 5.24693 5.26453 5.32712 5.43018 5.55723 5.62150 5.63849 5.68607 5.79043 5.80006 5.92098 6.17123 6.19539 6.58898 6.74983 6.99426 7.33637 7.56576 8.89088 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.003709 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.497046 B = 7548.025002 C = 8287.074792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.699 5.699 14 C 0.467 3.533 15 O -0.585 6.585 16 C 0.106 3.894 17 H 0.138 0.862 18 O -0.548 6.548 19 C -0.128 4.128 20 C -0.067 4.067 21 C -0.091 4.091 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.132 4.132 27 H 0.023 0.977 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.388 0.612 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 1.232 -20.946 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.350 5.350 14 C 0.254 3.746 15 O -0.466 6.466 16 C 0.043 3.957 17 H 0.156 0.844 18 O -0.354 6.354 19 C -0.166 4.166 20 C -0.105 4.105 21 C -0.091 4.091 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.150 4.150 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.237 0.763 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.268 1.650 -20.256 21.268 hybrid contribution 0.795 -0.704 0.616 1.228 sum -5.474 0.945 -19.640 20.410 Atomic orbital electron populations 1.21675 0.96993 0.99088 1.00249 1.21765 0.93740 0.99145 1.01250 1.18353 0.93602 0.89168 0.81518 0.98705 1.21600 0.91494 1.38833 1.06710 0.90920 1.25767 1.03252 0.94403 0.95077 1.70051 1.37058 1.38422 1.09845 0.85393 0.79230 0.77348 0.78659 1.20543 1.21071 1.18296 1.46288 1.15636 1.55592 1.17440 1.22198 0.82205 0.78873 0.91353 1.90668 1.52667 1.60944 1.42362 1.21911 0.87777 0.96466 0.89528 0.84422 1.86504 1.17607 1.39190 1.92116 1.22112 1.03783 0.97213 0.93462 1.20490 1.04082 0.95681 0.90217 1.20059 0.93703 0.98136 0.97216 1.21354 0.98575 0.98437 0.96435 1.21456 0.98646 0.96785 0.97866 1.21455 0.92884 1.00537 1.00578 1.21438 0.99413 0.97763 0.96199 1.21320 0.97891 0.97532 0.98260 0.95768 0.93688 0.93478 0.91200 0.93992 0.92658 0.76112 0.76293 0.89921 0.91553 0.90001 0.89523 0.84873 0.84550 0.84496 0.84609 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.66 16 3 C 0.28 13.96 2.24 44.24 0.10 14.06 16 4 H 0.00 -0.30 7.58 -2.38 -0.02 -0.32 16 5 C -0.55 -28.53 8.73 25.60 0.22 -28.31 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -52.18 11.29 21.45 0.24 -51.94 16 9 Si 0.97 41.65 29.54 68.60 2.03 43.67 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 13 N -0.70 -27.44 4.92 -446.09 -2.20 -29.64 16 14 C 0.47 17.42 5.73 87.66 0.50 17.93 16 15 O -0.59 -27.03 13.46 15.96 0.21 -26.82 16 16 C 0.11 2.74 3.38 29.85 0.10 2.84 16 17 H 0.14 3.05 8.14 -2.38 -0.02 3.04 16 18 O -0.55 -14.81 12.53 -129.99 -1.63 -16.44 16 19 C -0.13 -2.66 4.85 30.59 0.15 -2.52 16 20 C -0.07 -1.17 5.24 29.85 0.16 -1.01 16 21 C -0.09 -1.71 5.13 -19.87 -0.10 -1.81 16 22 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 23 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 24 C -0.14 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 26 C -0.13 -2.43 9.70 22.27 0.22 -2.22 16 27 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.96 5.65 -2.38 -0.01 1.94 16 30 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 33 H 0.40 13.19 8.24 -92.71 -0.76 12.42 16 34 H 0.39 9.22 8.79 -74.06 -0.65 8.57 16 35 H 0.08 1.72 7.77 -2.39 -0.02 1.70 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.41 7.77 -2.38 -0.02 1.39 16 38 H 0.09 1.30 8.08 -2.38 -0.02 1.28 16 39 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -67.52 353.75 1.72 -65.81 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.40 Total: 33.71 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.46 Total: -18.36 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -1.95 Total: -81.57 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.41 Total: -43.26 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -67.52 1.72 -65.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.978 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds