Wall clock time and date at job start Tue Mar 31 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47723 * 305.00451 * 16 14 13 18 18 O 1.42899 * 109.47304 * 185.00143 * 16 14 13 19 19 C 1.53000 * 109.46939 * 65.00266 * 16 14 13 20 20 C 1.53007 * 109.47396 * 184.99502 * 19 16 14 21 21 C 1.50692 * 109.47408 * 179.97438 * 20 19 16 22 22 C 1.38232 * 120.00041 * 269.73275 * 21 20 19 23 23 C 1.38243 * 119.99815 * 179.76508 * 22 21 20 24 24 C 1.38228 * 120.00047 * 0.50977 * 23 22 21 25 25 C 1.38236 * 119.99860 * 359.74193 * 24 23 22 26 26 C 1.38232 * 119.99988 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 0.96698 * 114.00097 * 300.00388 * 18 16 14 35 35 H 1.08996 * 109.47366 * 304.99855 * 19 16 14 36 36 H 1.09003 * 109.47014 * 65.00385 * 19 16 14 37 37 H 1.08996 * 109.47151 * 300.00485 * 20 19 16 38 38 H 1.09003 * 109.46318 * 60.00457 * 20 19 16 39 39 H 1.08001 * 120.00683 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.99579 * 180.22497 * 23 22 21 41 41 H 1.07999 * 120.00405 * 179.72675 * 24 23 22 42 42 H 1.08003 * 119.99863 * 179.97438 * 25 24 23 43 43 H 1.08005 * 119.99475 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.1525 2.6373 3.4822 18 8 -1.3280 3.7544 2.5719 19 6 0.9290 4.5576 2.8904 20 6 0.6084 5.1683 4.2562 21 6 1.4880 6.3696 4.4883 22 6 2.7146 6.2188 5.1077 23 6 3.5236 7.3201 5.3162 24 6 3.1015 8.5737 4.9149 25 6 1.8727 8.7253 4.3002 26 6 1.0658 7.6233 4.0874 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -1.5053 4.3800 1.8561 35 1 1.9751 4.2527 2.8652 36 1 0.7470 5.2968 2.1102 37 1 -0.4378 5.4732 4.2813 38 1 0.7903 4.4290 5.0363 39 1 3.0424 5.2400 5.4256 40 1 4.4835 7.2017 5.7969 41 1 3.7316 9.4348 5.0818 42 1 1.5427 9.7048 3.9871 43 1 0.1055 7.7418 3.6075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273813848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:50 Heat of formation + Delta-G solvation = -86.907930 kcal Electronic energy + Delta-G solvation = -23086.678344 eV Core-core repulsion = 19709.753772 eV Total energy + Delta-G solvation = -3376.924571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.72687 -39.18202 -36.72843 -34.95766 -33.93494 -32.43852 -31.18409 -31.00616 -30.01762 -27.38499 -26.07823 -23.25360 -22.69714 -22.61487 -20.94646 -20.41861 -19.38343 -17.78951 -16.86920 -16.22753 -16.06753 -15.68341 -15.32943 -15.02368 -14.96198 -14.25688 -14.07298 -13.54366 -13.40828 -13.26641 -12.92436 -12.79791 -12.65938 -12.37163 -11.86438 -11.52854 -11.46166 -11.30969 -11.25847 -11.15959 -10.98532 -10.86382 -10.83748 -10.43482 -10.30421 -10.18166 -9.64068 -9.06518 -9.04314 -8.96627 -8.65967 -8.51162 -7.85901 -6.14644 -4.24282 1.23173 1.27881 3.21556 3.26871 3.30047 3.32259 3.66013 4.01152 4.34260 4.45747 4.62766 4.70158 4.87333 4.98117 4.99083 5.15841 5.17898 5.23875 5.34037 5.41051 5.51656 5.60346 5.68720 5.88690 5.92793 6.03399 6.14896 6.34330 6.38745 6.38841 6.45498 6.53914 6.65505 6.88978 7.03117 7.17900 7.34983 7.42144 7.58160 7.64330 7.73591 7.88138 8.15994 8.62156 8.74720 9.07626 9.43195 10.90655 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.004118 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.141178 B = 6797.516631 C = 8438.477619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.472 3.528 15 O -0.543 6.543 16 C 0.090 3.910 17 H 0.116 0.884 18 O -0.543 6.543 19 C -0.139 4.139 20 C -0.076 4.076 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.120 4.120 26 C -0.118 4.118 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.380 0.620 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 12.002 14.378 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.256 3.744 15 O -0.422 6.422 16 C 0.027 3.973 17 H 0.134 0.866 18 O -0.347 6.347 19 C -0.178 4.178 20 C -0.114 4.114 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.229 0.771 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.806 11.473 14.010 18.325 hybrid contribution 1.536 0.311 -0.304 1.596 sum -1.270 11.784 13.706 18.120 Atomic orbital electron populations 1.21838 0.98301 0.98078 1.01238 1.21935 0.92629 0.99806 1.02284 1.18794 0.94215 0.89205 0.81021 0.93388 1.21263 0.90697 1.38999 1.06284 0.92059 1.24884 0.98578 0.94793 0.95387 1.69902 1.35045 1.37617 1.09339 0.86418 0.84912 0.77796 0.78124 1.19751 1.20855 1.20881 1.46539 1.14509 1.55691 1.18537 1.21213 0.83067 0.80148 0.89991 1.90684 1.51229 1.59959 1.40294 1.21915 0.83072 0.95715 0.96592 0.86593 1.86509 1.24841 1.66936 1.56457 1.22223 1.00716 0.97338 0.97487 1.20577 0.99114 0.94615 0.97073 1.19958 0.95286 0.94926 0.97618 1.21110 0.94081 0.98915 0.99405 1.21155 0.99600 0.92852 1.00075 1.21131 0.96593 0.97397 0.99555 1.21143 0.94726 0.98680 0.99250 1.21087 1.00043 0.92267 1.00181 0.94248 0.95831 0.93224 0.95033 0.88301 0.92602 0.77991 0.77115 0.90044 0.90877 0.90152 0.90778 0.85950 0.86179 0.86358 0.86249 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.50 11.29 55.43 0.63 -23.88 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.70 -13.95 4.92 -54.94 -0.27 -14.22 16 14 C 0.47 8.89 5.74 -10.99 -0.06 8.83 16 15 O -0.54 -12.32 13.46 -14.31 -0.19 -12.51 16 16 C 0.09 1.25 3.38 -27.88 -0.09 1.15 16 17 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 18 O -0.54 -7.73 12.53 -55.09 -0.69 -8.42 16 19 C -0.14 -1.64 4.85 -26.73 -0.13 -1.77 16 20 C -0.08 -0.76 5.24 -27.88 -0.15 -0.91 16 21 C -0.08 -0.82 5.13 -104.63 -0.54 -1.36 16 22 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.13 -1.21 10.05 -39.59 -0.40 -1.61 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.21 9.70 -39.59 -0.38 -1.59 16 27 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 6.62 8.24 -40.82 -0.34 6.29 16 34 H 0.38 4.73 8.79 45.56 0.40 5.14 16 35 H 0.08 0.98 7.77 -51.93 -0.40 0.57 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 38 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -30.80 353.74 -9.44 -40.24 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.91 Total: 12.01 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.31 Total: -13.94 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.36 Total: -38.09 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.88 Total: -20.93 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.80 -9.44 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.664 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds