Wall clock time and date at job start Tue Mar 31 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47723 * 305.00451 * 16 14 13 18 18 O 1.42899 * 109.47304 * 185.00143 * 16 14 13 19 19 C 1.53000 * 109.46939 * 65.00266 * 16 14 13 20 20 C 1.53007 * 109.47396 * 184.99502 * 19 16 14 21 21 C 1.50692 * 109.47408 * 179.97438 * 20 19 16 22 22 C 1.38232 * 120.00041 * 269.73275 * 21 20 19 23 23 C 1.38243 * 119.99815 * 179.76508 * 22 21 20 24 24 C 1.38228 * 120.00047 * 0.50977 * 23 22 21 25 25 C 1.38236 * 119.99860 * 359.74193 * 24 23 22 26 26 C 1.38232 * 119.99988 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 0.96698 * 114.00097 * 300.00388 * 18 16 14 35 35 H 1.08996 * 109.47366 * 304.99855 * 19 16 14 36 36 H 1.09003 * 109.47014 * 65.00385 * 19 16 14 37 37 H 1.08996 * 109.47151 * 300.00485 * 20 19 16 38 38 H 1.09003 * 109.46318 * 60.00457 * 20 19 16 39 39 H 1.08001 * 120.00683 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.99579 * 180.22497 * 23 22 21 41 41 H 1.07999 * 120.00405 * 179.72675 * 24 23 22 42 42 H 1.08003 * 119.99863 * 179.97438 * 25 24 23 43 43 H 1.08005 * 119.99475 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.1525 2.6373 3.4822 18 8 -1.3280 3.7544 2.5719 19 6 0.9290 4.5576 2.8904 20 6 0.6084 5.1683 4.2562 21 6 1.4880 6.3696 4.4883 22 6 2.7146 6.2188 5.1077 23 6 3.5236 7.3201 5.3162 24 6 3.1015 8.5737 4.9149 25 6 1.8727 8.7253 4.3002 26 6 1.0658 7.6233 4.0874 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -1.5053 4.3800 1.8561 35 1 1.9751 4.2527 2.8652 36 1 0.7470 5.2968 2.1102 37 1 -0.4378 5.4732 4.2813 38 1 0.7903 4.4290 5.0363 39 1 3.0424 5.2400 5.4256 40 1 4.4835 7.2017 5.7969 41 1 3.7316 9.4348 5.0818 42 1 1.5427 9.7048 3.9871 43 1 0.1055 7.7418 3.6075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273813848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:50 Heat of formation + Delta-G solvation = -105.780804 kcal Electronic energy + Delta-G solvation = -23087.496733 eV Core-core repulsion = 19709.753772 eV Total energy + Delta-G solvation = -3377.742960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07028 -40.07826 -38.04786 -36.69771 -34.91323 -34.23005 -32.92239 -31.71037 -31.11459 -29.08892 -27.34696 -24.99186 -23.81704 -23.40598 -22.07730 -21.71926 -21.12762 -19.35532 -17.84208 -17.64398 -17.48142 -16.84793 -16.81027 -16.13448 -16.12015 -15.72814 -15.39197 -14.84782 -14.60748 -14.26213 -14.21836 -13.85200 -13.81801 -13.68460 -13.46734 -13.19572 -12.90315 -12.86746 -12.72764 -12.61411 -12.14355 -12.09055 -12.06664 -11.95076 -11.62530 -11.59696 -11.50168 -11.04281 -10.57694 -10.32523 -9.76722 -9.64437 -9.51010 -8.16160 -6.33406 0.49616 0.55417 1.43511 1.45167 1.56345 1.78652 2.34994 2.60624 2.93252 3.13581 3.36400 3.71587 3.91434 4.00098 4.13702 4.19494 4.26476 4.37212 4.46089 4.48097 4.54767 4.56472 4.70445 4.74938 4.76348 4.82908 5.05773 5.07030 5.17008 5.24764 5.25745 5.32337 5.43112 5.55718 5.62459 5.63162 5.67879 5.78898 5.79408 5.91816 6.17000 6.18977 6.58403 6.75335 6.99460 7.33831 7.56727 8.89301 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.004118 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.141178 B = 6797.516631 C = 8438.477619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.699 5.699 14 C 0.467 3.533 15 O -0.585 6.585 16 C 0.107 3.893 17 H 0.141 0.859 18 O -0.548 6.548 19 C -0.129 4.129 20 C -0.067 4.067 21 C -0.092 4.092 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.131 4.131 26 C -0.133 4.133 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.023 0.977 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.387 0.613 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 12.615 16.503 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.350 5.350 14 C 0.254 3.746 15 O -0.466 6.466 16 C 0.044 3.956 17 H 0.158 0.842 18 O -0.353 6.353 19 C -0.167 4.167 20 C -0.104 4.104 21 C -0.092 4.092 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.151 4.151 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.237 0.763 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.783 12.106 16.179 20.286 hybrid contribution 1.177 0.177 -0.978 1.541 sum -0.606 12.284 15.201 19.553 Atomic orbital electron populations 1.21673 0.97088 0.99095 1.00163 1.21792 0.93611 0.99332 1.01335 1.18351 0.93617 0.89098 0.81543 0.98557 1.21611 0.91422 1.38737 1.06619 0.90943 1.25749 1.03144 0.94431 0.95078 1.70053 1.36966 1.38471 1.09905 0.85360 0.79357 0.77800 0.78201 1.18361 1.20519 1.21153 1.46289 1.15518 1.55664 1.17490 1.22200 0.81938 0.79187 0.91314 1.90669 1.52301 1.61290 1.42385 1.21905 0.83233 0.96545 0.93897 0.84160 1.86497 1.25000 1.67162 1.56686 1.22122 1.00052 0.96060 0.98492 1.20487 0.99141 0.94724 0.96029 1.20069 0.95684 0.95158 0.98248 1.21360 0.94151 0.99770 0.99520 1.21459 1.00339 0.92897 1.00076 1.21455 0.96810 0.98126 0.99093 1.21438 0.94870 0.99388 0.99149 1.21325 1.00678 0.92600 1.00473 0.93792 0.93653 0.95731 0.93916 0.91103 0.92661 0.76111 0.76312 0.90044 0.91848 0.89948 0.89379 0.84808 0.84533 0.84487 0.84612 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 13.95 2.24 44.24 0.10 14.05 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -28.28 8.73 25.60 0.22 -28.05 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.92 -52.04 11.29 21.45 0.24 -51.80 16 9 Si 0.97 41.57 29.54 68.60 2.03 43.59 16 10 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 13 N -0.70 -27.41 4.92 -446.11 -2.20 -29.61 16 14 C 0.47 17.40 5.74 87.66 0.50 17.91 16 15 O -0.59 -27.02 13.46 15.95 0.21 -26.81 16 16 C 0.11 2.76 3.38 29.85 0.10 2.86 16 17 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 18 O -0.55 -14.71 12.53 -129.99 -1.63 -16.34 16 19 C -0.13 -2.80 4.85 30.60 0.15 -2.65 16 20 C -0.07 -1.18 5.24 29.85 0.16 -1.02 16 21 C -0.09 -1.78 5.13 -19.87 -0.10 -1.88 16 22 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 24 C -0.14 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 26 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 27 H 0.04 1.92 5.64 -2.39 -0.01 1.91 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.02 1.20 7.85 -2.38 -0.02 1.18 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.40 13.17 8.24 -92.71 -0.76 12.41 16 34 H 0.39 9.30 8.79 -74.06 -0.65 8.65 16 35 H 0.08 1.79 7.77 -2.39 -0.02 1.77 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.44 7.77 -2.39 -0.02 1.42 16 38 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 39 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -67.28 353.74 1.72 -65.57 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.40 Total: 34.44 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.46 Total: -19.04 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.95 Total: -81.41 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.41 Total: -43.15 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -67.28 1.72 -65.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273813848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.212 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds