Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47199 * 2 1 4 4 H 1.08991 * 109.47194 * 54.99636 * 3 2 1 5 5 C 1.50699 * 109.47244 * 175.00216 * 3 2 1 6 6 H 1.08000 * 119.99898 * 120.00527 * 5 3 2 7 7 C 1.37879 * 119.99818 * 299.99601 * 5 3 2 8 8 N 1.31510 * 119.99992 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00037 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47196 * 59.99747 * 9 7 5 11 11 H 1.48493 * 109.47310 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.46954 * 300.00351 * 9 7 5 13 13 N 1.46507 * 109.46965 * 295.00024 * 3 2 1 14 14 C 1.34773 * 120.00025 * 84.99813 * 13 3 2 15 15 O 1.21282 * 120.00040 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00201 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47335 * 86.53439 * 16 14 13 18 18 O 1.42900 * 109.47005 * 326.53815 * 16 14 13 19 19 C 1.42897 * 113.99695 * 299.99359 * 18 16 14 20 20 C 1.50697 * 109.47425 * 206.53549 * 16 14 13 21 21 C 1.38240 * 120.00293 * 42.37812 * 20 16 14 22 22 C 1.38224 * 120.00157 * 179.78988 * 21 20 16 23 23 C 1.38240 * 120.00347 * 0.43904 * 22 21 20 24 24 C 1.38238 * 119.99724 * 359.81496 * 23 22 21 25 25 C 1.38235 * 119.99985 * 222.65442 * 20 16 14 26 26 H 1.09001 * 109.46528 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46734 * 299.99857 * 1 2 3 28 28 H 1.08998 * 109.46988 * 60.00427 * 1 2 3 29 29 H 1.09003 * 109.47321 * 240.00114 * 2 1 3 30 30 H 1.09003 * 109.47117 * 120.00292 * 2 1 3 31 31 H 0.96998 * 120.00484 * 180.02562 * 8 7 5 32 32 H 0.97000 * 120.00090 * 264.99567 * 13 3 2 33 33 H 1.09007 * 109.47128 * 300.00636 * 17 16 14 34 34 H 1.09006 * 109.47002 * 59.99792 * 17 16 14 35 35 H 1.08993 * 109.47754 * 180.02562 * 17 16 14 36 36 H 1.09006 * 109.47332 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47782 * 299.99818 * 19 18 16 38 38 H 1.09003 * 109.47200 * 60.00856 * 19 18 16 39 39 H 1.08002 * 119.99589 * 359.97438 * 21 20 16 40 40 H 1.08007 * 120.00309 * 180.27807 * 22 21 20 41 41 H 1.07993 * 120.00273 * 179.83623 * 23 22 21 42 42 H 1.07996 * 119.99962 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00164 * 359.97281 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3818 10 1 6.4995 2.2815 1.3820 11 1 6.3978 0.2168 2.6503 12 1 6.5975 0.1473 0.2348 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3392 2.6326 -0.4342 16 6 0.0367 3.3385 -2.6545 17 6 -0.5545 2.3015 -3.6116 18 8 1.1868 3.9387 -3.2537 19 6 1.8180 4.9275 -2.4378 20 6 -0.9925 4.4013 -2.3674 21 6 -0.8414 5.2321 -1.2729 22 6 -1.7831 6.2098 -1.0121 23 6 -2.8807 6.3508 -1.8406 24 6 -3.0346 5.5166 -2.9321 25 6 -2.0905 4.5417 -3.1954 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0611 2.9498 32 1 2.2720 2.1232 -1.9978 33 1 0.1899 1.5327 -3.8192 34 1 -1.4318 1.8437 -3.1545 35 1 -0.8423 2.7890 -4.5430 36 1 2.6816 5.3351 -2.9635 37 1 1.1107 5.7292 -2.2257 38 1 2.1433 4.4728 -1.5021 39 1 0.0140 5.1192 -0.6233 40 1 -1.6628 6.8618 -0.1596 41 1 -3.6178 7.1129 -1.6353 42 1 -3.8922 5.6266 -3.5791 43 1 -2.2107 3.8900 -4.0482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273824950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = -54.463624 kcal Electronic energy + Delta-G solvation = -24606.456988 eV Core-core repulsion = 21230.939307 eV Total energy + Delta-G solvation = -3375.517681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62489 -38.44372 -37.10600 -35.10692 -32.79974 -32.33320 -30.90196 -30.84983 -29.40920 -27.02077 -26.17222 -24.65176 -23.09075 -22.32736 -21.51768 -19.83779 -19.25417 -17.77945 -17.20347 -16.32892 -15.76364 -15.36013 -15.21685 -14.61842 -14.51146 -14.38795 -14.03979 -13.71570 -13.48164 -12.90046 -12.66059 -12.55950 -12.45353 -12.35787 -11.83362 -11.73908 -11.69882 -11.44162 -11.25191 -11.01762 -10.87471 -10.84911 -10.78281 -10.32967 -10.18070 -9.98724 -9.63020 -9.07020 -8.83001 -8.73847 -8.67325 -8.48642 -7.81928 -6.13352 -4.23005 1.37403 1.50816 3.24157 3.25588 3.30196 3.31403 3.63431 4.03802 4.07232 4.35634 4.64342 4.92898 5.04905 5.15555 5.17669 5.25746 5.37984 5.51526 5.55495 5.61721 5.67531 5.74510 5.79571 5.96087 6.02012 6.11016 6.14539 6.38405 6.45160 6.51114 6.57712 6.64914 6.67801 7.02533 7.05704 7.06659 7.21009 7.35754 7.43522 7.61383 7.73167 7.88574 8.16749 8.65444 8.75634 9.09692 9.44435 10.91785 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.004675 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.174277 B = 5988.374841 C = 6209.662890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.698 5.698 14 C 0.484 3.516 15 O -0.535 6.535 16 C 0.136 3.864 17 C -0.136 4.136 18 O -0.365 6.365 19 C 0.011 3.989 20 C -0.092 4.092 21 C -0.081 4.081 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.102 4.102 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.393 0.607 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 8.585 -10.650 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.346 5.346 14 C 0.267 3.733 15 O -0.414 6.414 16 C 0.094 3.906 17 C -0.193 4.193 18 O -0.284 6.284 19 C -0.085 4.085 20 C -0.093 4.093 21 C -0.099 4.099 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.120 4.120 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.754 8.384 -9.942 15.677 hybrid contribution 1.252 0.049 0.120 1.259 sum -7.501 8.433 -9.822 14.962 Atomic orbital electron populations 1.21839 0.98369 0.98037 1.01190 1.21935 0.92583 0.99809 1.02310 1.18800 0.94204 0.89224 0.80909 0.93421 1.21192 0.90676 1.39171 1.06264 0.92125 1.24872 0.98545 0.94764 0.95373 1.69881 1.35217 1.37512 1.09334 0.86528 0.84920 0.78314 0.77461 1.20201 1.21149 1.20134 1.46562 1.14436 1.55039 1.18596 1.20665 0.83388 0.80396 0.88892 1.90702 1.51210 1.59851 1.39608 1.20676 0.85472 0.91559 0.92932 1.21792 1.01522 0.97414 0.98556 1.87970 1.41491 1.55609 1.43346 1.23118 0.97298 0.91501 0.96600 1.19874 0.96197 0.97100 0.96153 1.21128 0.99086 0.94045 0.95652 1.21109 0.94773 0.98795 0.99676 1.21131 0.97736 0.99343 0.95338 1.21065 0.99219 0.96342 0.98129 1.21089 0.93589 0.98161 0.99204 0.95851 0.93196 0.94316 0.95002 0.88281 0.92514 0.77387 0.90856 0.90266 0.90715 0.89291 0.93334 0.92352 0.86031 0.86103 0.86330 0.86181 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 N -0.70 -14.46 4.07 -54.93 -0.22 -14.69 16 14 C 0.48 9.51 3.41 -10.99 -0.04 9.47 16 15 O -0.54 -12.19 12.43 5.56 0.07 -12.12 16 16 C 0.14 2.18 1.01 -92.93 -0.09 2.09 16 17 C -0.14 -1.83 7.71 37.16 0.29 -1.54 16 18 O -0.37 -5.66 9.64 -35.23 -0.34 -6.00 16 19 C 0.01 0.16 9.45 101.05 0.96 1.11 16 20 C -0.09 -1.43 4.35 -104.62 -0.45 -1.88 16 21 C -0.08 -1.28 6.29 -39.59 -0.25 -1.52 16 22 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 23 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 24 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 25 C -0.10 -1.34 9.11 -39.58 -0.36 -1.71 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 28 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 7.55 7.89 -40.82 -0.32 7.23 16 33 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.83 6.77 -51.93 -0.35 0.47 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.67 5.52 -51.93 -0.29 0.38 16 38 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16 39 H 0.12 2.08 6.43 -52.49 -0.34 1.74 16 40 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 1.38 5.96 -52.49 -0.31 1.07 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -29.53 337.08 -7.61 -37.14 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.28 Total: 10.70 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.53 Total: -11.70 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.40 Total: -38.52 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.27 Total: -18.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.53 -7.61 -37.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273824950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.321 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds