Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47199 * 2 1 4 4 H 1.08991 * 109.47194 * 54.99636 * 3 2 1 5 5 C 1.50699 * 109.47244 * 175.00216 * 3 2 1 6 6 H 1.08000 * 119.99898 * 120.00527 * 5 3 2 7 7 C 1.37879 * 119.99818 * 299.99601 * 5 3 2 8 8 N 1.31510 * 119.99992 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00037 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47196 * 59.99747 * 9 7 5 11 11 H 1.48493 * 109.47310 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.46954 * 300.00351 * 9 7 5 13 13 N 1.46507 * 109.46965 * 295.00024 * 3 2 1 14 14 C 1.34773 * 120.00025 * 84.99813 * 13 3 2 15 15 O 1.21282 * 120.00040 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00201 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47335 * 86.53439 * 16 14 13 18 18 O 1.42900 * 109.47005 * 326.53815 * 16 14 13 19 19 C 1.42897 * 113.99695 * 299.99359 * 18 16 14 20 20 C 1.50697 * 109.47425 * 206.53549 * 16 14 13 21 21 C 1.38240 * 120.00293 * 42.37812 * 20 16 14 22 22 C 1.38224 * 120.00157 * 179.78988 * 21 20 16 23 23 C 1.38240 * 120.00347 * 0.43904 * 22 21 20 24 24 C 1.38238 * 119.99724 * 359.81496 * 23 22 21 25 25 C 1.38235 * 119.99985 * 222.65442 * 20 16 14 26 26 H 1.09001 * 109.46528 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46734 * 299.99857 * 1 2 3 28 28 H 1.08998 * 109.46988 * 60.00427 * 1 2 3 29 29 H 1.09003 * 109.47321 * 240.00114 * 2 1 3 30 30 H 1.09003 * 109.47117 * 120.00292 * 2 1 3 31 31 H 0.96998 * 120.00484 * 180.02562 * 8 7 5 32 32 H 0.97000 * 120.00090 * 264.99567 * 13 3 2 33 33 H 1.09007 * 109.47128 * 300.00636 * 17 16 14 34 34 H 1.09006 * 109.47002 * 59.99792 * 17 16 14 35 35 H 1.08993 * 109.47754 * 180.02562 * 17 16 14 36 36 H 1.09006 * 109.47332 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47782 * 299.99818 * 19 18 16 38 38 H 1.09003 * 109.47200 * 60.00856 * 19 18 16 39 39 H 1.08002 * 119.99589 * 359.97438 * 21 20 16 40 40 H 1.08007 * 120.00309 * 180.27807 * 22 21 20 41 41 H 1.07993 * 120.00273 * 179.83623 * 23 22 21 42 42 H 1.07996 * 119.99962 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00164 * 359.97281 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3818 10 1 6.4995 2.2815 1.3820 11 1 6.3978 0.2168 2.6503 12 1 6.5975 0.1473 0.2348 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3392 2.6326 -0.4342 16 6 0.0367 3.3385 -2.6545 17 6 -0.5545 2.3015 -3.6116 18 8 1.1868 3.9387 -3.2537 19 6 1.8180 4.9275 -2.4378 20 6 -0.9925 4.4013 -2.3674 21 6 -0.8414 5.2321 -1.2729 22 6 -1.7831 6.2098 -1.0121 23 6 -2.8807 6.3508 -1.8406 24 6 -3.0346 5.5166 -2.9321 25 6 -2.0905 4.5417 -3.1954 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0611 2.9498 32 1 2.2720 2.1232 -1.9978 33 1 0.1899 1.5327 -3.8192 34 1 -1.4318 1.8437 -3.1545 35 1 -0.8423 2.7890 -4.5430 36 1 2.6816 5.3351 -2.9635 37 1 1.1107 5.7292 -2.2257 38 1 2.1433 4.4728 -1.5021 39 1 0.0140 5.1192 -0.6233 40 1 -1.6628 6.8618 -0.1596 41 1 -3.6178 7.1129 -1.6353 42 1 -3.8922 5.6266 -3.5791 43 1 -2.2107 3.8900 -4.0482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273824950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = -72.369063 kcal Electronic energy + Delta-G solvation = -24607.233426 eV Core-core repulsion = 21230.939307 eV Total energy + Delta-G solvation = -3376.294119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94942 -39.76712 -38.39368 -36.95807 -34.27050 -33.95402 -32.72371 -31.89960 -30.50573 -28.95120 -27.33883 -25.98264 -24.90919 -23.40812 -22.87213 -21.49621 -20.88772 -19.34521 -18.35782 -17.94992 -17.33878 -16.80668 -16.51400 -16.30384 -15.94904 -15.50715 -15.45727 -15.13521 -14.65282 -14.57083 -14.14008 -13.99768 -13.60783 -13.53255 -13.37919 -13.23278 -13.15566 -12.92168 -12.76836 -12.73389 -12.66659 -12.19446 -12.11882 -12.01299 -11.84874 -11.59773 -11.23531 -11.07462 -10.56750 -10.24868 -9.79955 -9.76289 -9.61238 -8.17261 -6.34838 0.34638 0.49673 1.43532 1.44975 1.52860 1.70439 2.29001 2.46717 2.70786 2.97617 3.11924 3.49380 3.77686 3.97977 4.11712 4.16557 4.25948 4.41195 4.43622 4.47172 4.54989 4.56846 4.62515 4.71409 4.72343 4.76090 4.80877 5.01673 5.03620 5.11161 5.12801 5.23256 5.41752 5.52995 5.53699 5.58856 5.60321 5.62246 5.74360 5.81812 5.98098 6.09026 6.15112 6.72199 6.94470 7.31093 7.51046 8.87672 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.004675 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.174277 B = 5988.374841 C = 6209.662890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.696 5.696 14 C 0.484 3.516 15 O -0.570 6.570 16 C 0.143 3.857 17 C -0.135 4.135 18 O -0.364 6.364 19 C 0.013 3.987 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.107 4.107 26 H 0.046 0.954 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.030 0.970 39 H 0.091 0.909 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 9.356 -13.171 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.345 5.345 14 C 0.269 3.731 15 O -0.450 6.450 16 C 0.100 3.900 17 C -0.192 4.192 18 O -0.283 6.283 19 C -0.083 4.083 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.155 4.155 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.124 4.124 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.109 0.891 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.174 0.826 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.521 9.167 -12.499 18.191 hybrid contribution 1.414 -0.110 0.932 1.697 sum -8.107 9.057 -11.567 16.779 Atomic orbital electron populations 1.21671 0.96912 0.99190 1.00212 1.21786 0.93807 0.99118 1.01283 1.18365 0.93619 0.89169 0.81122 0.98518 1.21517 0.91401 1.39133 1.06674 0.91371 1.25728 1.03190 0.94284 0.94953 1.70033 1.37104 1.38225 1.09818 0.85462 0.79238 0.78462 0.77574 1.19673 1.21099 1.18993 1.46337 1.15345 1.55349 1.17488 1.21430 0.82243 0.79366 0.90033 1.90677 1.52106 1.60911 1.41329 1.20636 0.85921 0.92289 0.91121 1.21869 1.01343 0.96875 0.99126 1.87964 1.41544 1.55684 1.43111 1.23152 0.98243 0.91234 0.95699 1.19922 0.97235 0.97260 0.97082 1.21049 0.99360 0.95971 0.96219 1.21342 0.95034 0.98503 1.00645 1.21539 0.97307 0.99726 0.94609 1.21528 0.99592 0.95020 0.98100 1.21407 0.92757 0.98871 0.99391 0.93479 0.95676 0.93718 0.94134 0.90939 0.92581 0.76393 0.90818 0.90271 0.87594 0.86728 0.92897 0.95159 0.89054 0.85009 0.83143 0.82579 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.97 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.54 2.24 44.24 0.10 14.64 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -29.31 8.73 25.60 0.22 -29.09 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -52.37 11.29 21.45 0.24 -52.12 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.25 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 13 N -0.70 -29.80 4.07 -446.11 -1.81 -31.62 16 14 C 0.48 19.62 3.41 87.66 0.30 19.92 16 15 O -0.57 -27.23 12.43 -3.04 -0.04 -27.26 16 16 C 0.14 4.50 1.01 -12.29 -0.01 4.49 16 17 C -0.14 -3.37 7.71 71.98 0.55 -2.81 16 18 O -0.36 -11.00 9.64 -148.98 -1.44 -12.44 16 19 C 0.01 0.37 9.45 113.37 1.07 1.44 16 20 C -0.11 -3.44 4.35 -19.87 -0.09 -3.53 16 21 C -0.11 -3.47 6.29 22.27 0.14 -3.33 16 22 C -0.14 -3.60 10.05 22.27 0.22 -3.37 16 23 C -0.11 -2.37 10.05 22.27 0.22 -2.14 16 24 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 25 C -0.11 -2.50 9.11 22.27 0.20 -2.30 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.02 1.23 7.85 -2.39 -0.02 1.21 16 28 H 0.04 1.95 5.65 -2.39 -0.01 1.94 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 4.03 5.95 -2.39 -0.01 4.02 16 31 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.40 15.66 7.89 -92.71 -0.73 14.93 16 33 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.11 1.97 6.77 -2.39 -0.02 1.95 16 36 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.05 1.49 5.52 -2.39 -0.01 1.47 16 38 H 0.03 1.04 6.56 -2.39 -0.02 1.02 16 39 H 0.09 3.39 6.43 -2.91 -0.02 3.37 16 40 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.15 2.69 5.96 -2.91 -0.02 2.67 16 Total: -1.00 -66.77 337.08 3.65 -63.11 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.28 Total: 33.75 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 4.39 Total: -17.68 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -1.57 Total: -83.74 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.47 Total: -39.70 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -66.77 3.65 -63.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273824950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.254 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds