Wall clock time and date at job start Tue Mar 31 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47363 * 2 1 4 4 H 1.08995 * 109.47148 * 305.00010 * 3 2 1 5 5 C 1.50692 * 109.47249 * 184.99721 * 3 2 1 6 6 H 1.08004 * 120.00601 * 240.00202 * 5 3 2 7 7 C 1.37881 * 120.00069 * 59.99884 * 5 3 2 8 8 N 1.31513 * 120.00055 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00126 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46893 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46848 * 120.00409 * 9 7 5 12 12 H 1.48498 * 109.47338 * 240.00268 * 9 7 5 13 13 N 1.46505 * 109.46744 * 64.99771 * 3 2 1 14 14 C 1.34769 * 119.99953 * 274.99693 * 13 3 2 15 15 O 1.21283 * 120.00386 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99832 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47018 * 274.82246 * 16 14 13 18 18 O 1.42895 * 109.47147 * 34.82530 * 16 14 13 19 19 C 1.42903 * 113.99970 * 60.00057 * 18 16 14 20 20 C 1.50704 * 109.46968 * 154.82793 * 16 14 13 21 21 C 1.38233 * 119.99803 * 318.33996 * 20 16 14 22 22 C 1.38236 * 119.99581 * 179.76364 * 21 20 16 23 23 C 1.38233 * 120.00512 * 0.51964 * 22 21 20 24 24 C 1.38238 * 119.99682 * 359.73847 * 23 22 21 25 25 C 1.38235 * 119.99870 * 138.62163 * 20 16 14 26 26 H 1.08997 * 109.47432 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47317 * 300.00435 * 1 2 3 28 28 H 1.09001 * 109.46851 * 59.99932 * 1 2 3 29 29 H 1.08999 * 109.46976 * 239.99920 * 2 1 3 30 30 H 1.09001 * 109.46851 * 120.00068 * 2 1 3 31 31 H 0.96992 * 120.00001 * 179.97438 * 8 7 5 32 32 H 0.97005 * 120.00111 * 95.00447 * 13 3 2 33 33 H 1.08996 * 109.47616 * 300.00347 * 17 16 14 34 34 H 1.09007 * 109.46647 * 60.00357 * 17 16 14 35 35 H 1.08999 * 109.46845 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46838 * 179.97438 * 19 18 16 37 37 H 1.08993 * 109.47201 * 300.00008 * 19 18 16 38 38 H 1.09007 * 109.47059 * 60.00298 * 19 18 16 39 39 H 1.08002 * 120.00224 * 0.02562 * 21 20 16 40 40 H 1.08004 * 120.00057 * 180.23058 * 22 21 20 41 41 H 1.07997 * 120.00797 * 179.72235 * 23 22 21 42 42 H 1.07994 * 120.00256 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00079 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8811 -1.3816 10 1 6.5987 1.5461 -0.1940 11 1 6.4970 -0.5177 -1.4628 12 1 6.3991 1.6165 -2.6100 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4343 16 6 0.0367 3.3386 2.6545 17 6 -0.5234 2.2959 3.6241 18 8 1.1806 3.9656 3.2377 19 6 1.7832 4.9617 2.4091 20 6 -1.0168 4.3785 2.3718 21 6 -0.9016 5.1952 1.2624 22 6 -1.8705 6.1458 1.0005 23 6 -2.9489 6.2870 1.8537 24 6 -3.0612 5.4740 2.9660 25 6 -2.0952 4.5197 3.2251 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0605 -2.9501 32 1 2.2719 2.1231 1.9979 33 1 -1.3959 1.8176 3.1792 34 1 0.2386 1.5437 3.8285 35 1 -0.8111 2.7835 4.5555 36 1 2.6437 5.3900 2.9231 37 1 2.1076 4.5078 1.4728 38 1 1.0575 5.7477 2.1996 39 1 -0.0570 5.0877 0.5980 40 1 -1.7825 6.7813 0.1317 41 1 -3.7035 7.0327 1.6516 42 1 -3.9035 5.5845 3.6329 43 1 -2.1829 3.8844 4.0941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273825926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:58 Heat of formation + Delta-G solvation = -54.835927 kcal Electronic energy + Delta-G solvation = -24604.153970 eV Core-core repulsion = 21228.620145 eV Total energy + Delta-G solvation = -3375.533825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62207 -38.44028 -37.10689 -35.10639 -32.79681 -32.33797 -30.89534 -30.85033 -29.40725 -27.02108 -26.17222 -24.65027 -23.09380 -22.32709 -21.51658 -19.83987 -19.25262 -17.77238 -17.20262 -16.33150 -15.76996 -15.35554 -15.21692 -14.61869 -14.51138 -14.38314 -14.04175 -13.71859 -13.48216 -12.89488 -12.66779 -12.55707 -12.45417 -12.35527 -11.83464 -11.74086 -11.69744 -11.44666 -11.26494 -10.99150 -10.89377 -10.84253 -10.78804 -10.31234 -10.18737 -9.98810 -9.63083 -9.05603 -8.82806 -8.72569 -8.68175 -8.49544 -7.82017 -6.13956 -4.23329 1.37666 1.51180 3.22158 3.24993 3.30659 3.33303 3.63979 4.04070 4.06945 4.35347 4.64389 4.93420 5.05130 5.15822 5.17364 5.26039 5.37793 5.51766 5.55454 5.61770 5.67686 5.74708 5.79687 5.95901 6.02388 6.11497 6.14619 6.38240 6.45049 6.51326 6.58178 6.64822 6.68265 7.02434 7.05933 7.06817 7.20966 7.35610 7.43409 7.61562 7.72976 7.88426 8.16463 8.65384 8.75778 9.09615 9.44256 10.91310 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.004662 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.465963 B = 6004.357435 C = 6219.438422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.698 5.698 14 C 0.484 3.516 15 O -0.536 6.536 16 C 0.136 3.864 17 C -0.136 4.136 18 O -0.365 6.365 19 C 0.012 3.988 20 C -0.093 4.093 21 C -0.080 4.080 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.103 4.103 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.393 0.607 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 8.549 10.685 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.266 3.734 15 O -0.414 6.414 16 C 0.094 3.906 17 C -0.193 4.193 18 O -0.284 6.284 19 C -0.084 4.084 20 C -0.094 4.094 21 C -0.098 4.098 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.121 4.121 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.226 0.774 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.810 8.356 9.986 15.721 hybrid contribution 1.235 0.030 -0.143 1.244 sum -7.575 8.386 9.843 14.986 Atomic orbital electron populations 1.21839 0.98361 0.98038 1.01195 1.21932 0.92591 0.99801 1.02308 1.18809 0.94245 0.89229 0.80917 0.93416 1.21270 0.90684 1.38964 1.06242 0.92009 1.24880 0.98559 0.94783 0.95385 1.69902 1.35029 1.37686 1.09327 0.86419 0.84936 0.77813 0.78105 1.19702 1.20868 1.20912 1.46554 1.14434 1.55012 1.18593 1.20668 0.83384 0.80407 0.88894 1.90703 1.51185 1.59851 1.39643 1.20678 0.85428 0.91450 0.93084 1.21793 1.01737 0.97327 0.98435 1.87970 1.42603 1.54427 1.43407 1.23097 0.97660 0.91328 0.96324 1.19872 0.96240 0.97246 0.96011 1.21135 0.98911 0.94059 0.95683 1.21111 0.94708 0.98970 0.99580 1.21130 0.97953 0.99369 0.95101 1.21062 0.99094 0.96601 0.98031 1.21086 0.93639 0.98213 0.99113 0.95851 0.94304 0.93205 0.88287 0.94998 0.92631 0.77391 0.90282 0.90850 0.90719 0.89295 0.92414 0.93362 0.86006 0.86112 0.86339 0.86192 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.68 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.45 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.70 -14.44 4.15 -54.93 -0.23 -14.67 16 14 C 0.48 9.49 3.40 -10.99 -0.04 9.46 16 15 O -0.54 -12.16 12.28 5.55 0.07 -12.09 16 16 C 0.14 2.18 1.00 -92.92 -0.09 2.08 16 17 C -0.14 -1.83 7.75 37.16 0.29 -1.54 16 18 O -0.37 -5.66 9.67 -35.23 -0.34 -6.00 16 19 C 0.01 0.17 9.53 101.05 0.96 1.14 16 20 C -0.09 -1.43 4.34 -104.62 -0.45 -1.89 16 21 C -0.08 -1.26 6.26 -39.58 -0.25 -1.50 16 22 C -0.13 -1.69 10.05 -39.58 -0.40 -2.08 16 23 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 24 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 25 C -0.10 -1.34 9.12 -39.58 -0.36 -1.70 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 7.54 7.97 -40.82 -0.33 7.22 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.82 6.73 -51.93 -0.35 0.47 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.95 6.62 -51.93 -0.34 0.60 16 38 H 0.05 0.66 5.57 -51.93 -0.29 0.37 16 39 H 0.12 2.09 6.42 -52.49 -0.34 1.75 16 40 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.13 1.38 5.97 -52.49 -0.31 1.07 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -29.55 337.25 -7.61 -37.16 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.28 Total: 10.62 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.51 Total: -11.69 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.40 Total: -38.50 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.27 Total: -18.09 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.55 -7.61 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273825926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.675 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds