Wall clock time and date at job start Tue Mar 31 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47279 * 2 1 4 4 H 1.08995 * 109.47427 * 304.99714 * 3 2 1 5 5 C 1.50706 * 109.47288 * 184.99826 * 3 2 1 6 6 H 1.07996 * 120.00247 * 240.00244 * 5 3 2 7 7 C 1.37877 * 119.99737 * 59.99772 * 5 3 2 8 8 N 1.31516 * 120.00089 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46810 * 60.00760 * 9 7 5 11 11 H 1.48497 * 109.47227 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47764 * 300.00435 * 9 7 5 13 13 N 1.46506 * 109.46971 * 65.00112 * 3 2 1 14 14 C 1.34777 * 119.99736 * 274.99593 * 13 3 2 15 15 O 1.21279 * 120.00098 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99591 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47021 * 85.47853 * 16 14 13 18 18 O 1.42901 * 109.47700 * 325.47967 * 16 14 13 19 19 C 1.42896 * 113.99642 * 300.00297 * 18 16 14 20 20 C 1.50704 * 109.47227 * 205.47432 * 16 14 13 21 21 C 1.38237 * 119.99415 * 42.63141 * 20 16 14 22 22 C 1.38238 * 119.99585 * 179.78494 * 21 20 16 23 23 C 1.38228 * 120.00186 * 0.44733 * 22 21 20 24 24 C 1.38238 * 119.99980 * 359.80594 * 23 22 21 25 25 C 1.38231 * 120.00391 * 222.90565 * 20 16 14 26 26 H 1.09004 * 109.46974 * 300.00307 * 1 2 3 27 27 H 1.08996 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47169 * 59.99932 * 1 2 3 29 29 H 1.09004 * 109.46843 * 120.00329 * 2 1 3 30 30 H 1.09004 * 109.46974 * 239.99693 * 2 1 3 31 31 H 0.96999 * 120.00163 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99937 * 95.00587 * 13 3 2 33 33 H 1.09007 * 109.46886 * 59.99982 * 17 16 14 34 34 H 1.09001 * 109.47088 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.47450 * 299.99957 * 17 16 14 36 36 H 1.09004 * 109.47129 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.47188 * 299.99662 * 19 18 16 38 38 H 1.08999 * 109.47861 * 59.99823 * 19 18 16 39 39 H 1.07998 * 120.00368 * 0.02562 * 21 20 16 40 40 H 1.08004 * 119.99495 * 180.27541 * 22 21 20 41 41 H 1.07996 * 120.00023 * 179.83570 * 23 22 21 42 42 H 1.08003 * 120.00121 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00091 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8811 -1.3817 10 1 6.5975 0.1470 -0.2348 11 1 6.3979 0.2165 -2.6502 12 1 6.4996 2.2812 -1.3821 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3376 2.6549 17 6 0.5362 4.7837 2.6505 18 8 0.6150 2.6370 3.7578 19 6 0.2111 1.2697 3.8540 20 6 -1.4651 3.3256 2.7840 21 6 -2.1778 2.1874 2.4561 22 6 -3.5547 2.1749 2.5788 23 6 -4.2195 3.3034 3.0205 24 6 -3.5072 4.4433 3.3435 25 6 -2.1300 4.4544 3.2250 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.8293 -0.0605 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0948 5.3181 1.8093 34 1 0.2474 5.2707 3.5819 35 1 1.6221 4.7925 2.5571 36 1 0.6935 0.8081 4.7157 37 1 -0.8713 1.2180 3.9723 38 1 0.5032 0.7397 2.9475 39 1 -1.6587 1.3068 2.1077 40 1 -4.1111 1.2842 2.3268 41 1 -5.2954 3.2945 3.1138 42 1 -4.0267 5.3252 3.6883 43 1 -1.5735 5.3449 3.4774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273825928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:00 Heat of formation + Delta-G solvation = -72.232531 kcal Electronic energy + Delta-G solvation = -24727.879024 eV Core-core repulsion = 21351.590826 eV Total energy + Delta-G solvation = -3376.288198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97807 -39.74031 -38.37537 -36.97448 -34.26882 -33.98466 -32.75137 -31.88658 -30.42421 -29.02844 -27.32938 -26.00391 -24.89909 -23.34522 -22.92410 -21.51549 -20.89333 -19.36137 -18.34725 -17.88898 -17.23857 -17.07901 -16.45507 -16.31418 -15.96587 -15.48017 -15.27383 -15.21355 -14.71620 -14.57771 -14.16578 -13.86870 -13.68162 -13.58460 -13.38805 -13.22478 -13.11402 -12.93578 -12.79344 -12.71942 -12.65893 -12.21183 -12.07613 -12.00795 -11.85227 -11.59519 -11.21818 -11.08047 -10.55703 -10.26533 -9.78313 -9.75138 -9.61157 -8.17073 -6.34591 0.35574 0.50888 1.44075 1.45623 1.53423 1.69778 2.29772 2.46842 2.70920 2.98525 3.12093 3.49590 3.77224 3.98124 4.09784 4.16735 4.25819 4.40430 4.43166 4.46480 4.52990 4.57198 4.62877 4.69405 4.72529 4.75694 4.81388 4.98767 5.06134 5.10529 5.13649 5.22065 5.40513 5.52655 5.54409 5.59452 5.61007 5.63632 5.74116 5.82737 5.98116 6.09948 6.14890 6.72418 6.94315 7.31237 7.50797 8.87821 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.004633 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.924407 B = 6041.601397 C = 6428.515670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.696 5.696 14 C 0.484 3.516 15 O -0.570 6.570 16 C 0.143 3.857 17 C -0.136 4.136 18 O -0.364 6.364 19 C 0.010 3.990 20 C -0.115 4.115 21 C -0.107 4.107 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.108 4.108 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.025 0.975 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.401 0.599 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 5.875 14.379 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.345 5.345 14 C 0.269 3.731 15 O -0.450 6.450 16 C 0.101 3.899 17 C -0.193 4.193 18 O -0.283 6.283 19 C -0.086 4.086 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.155 4.155 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.126 4.126 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.117 0.883 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.897 5.828 13.652 18.414 hybrid contribution 1.155 -0.630 -0.688 1.485 sum -9.742 5.198 12.965 17.029 Atomic orbital electron populations 1.21747 0.97024 0.99159 1.00323 1.21764 0.93686 0.99074 1.01253 1.18377 0.93640 0.89165 0.81174 0.98435 1.21530 0.91442 1.39108 1.06715 0.91358 1.25733 1.03229 0.94286 0.94937 1.70035 1.37100 1.38267 1.09795 0.85450 0.79197 0.78464 0.77556 1.18999 1.21100 1.19678 1.46333 1.15467 1.55252 1.17453 1.21435 0.82200 0.78973 0.90511 1.90677 1.52229 1.60116 1.41968 1.20608 0.90585 0.95241 0.83483 1.21867 1.02538 0.90229 1.04703 1.87973 1.69177 1.24088 1.47075 1.23207 1.00867 0.81816 1.02712 1.19915 0.93724 0.95837 1.02085 1.21136 0.95462 0.97693 0.98223 1.21356 0.93548 1.00067 1.00539 1.21537 1.01254 0.92649 0.97780 1.21510 0.93572 0.99327 0.99948 1.21400 0.95421 0.97484 0.98291 0.93508 0.93537 0.95616 0.94201 0.90932 0.92582 0.76386 0.90477 0.87568 0.90996 0.86720 0.92817 0.94778 0.88301 0.84852 0.83198 0.82741 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.71 16 3 C 0.28 14.48 2.24 44.24 0.10 14.58 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -29.40 8.73 25.60 0.22 -29.18 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 1.00 5.29 84.65 0.45 1.44 16 8 N -0.91 -52.34 11.29 21.45 0.24 -52.10 16 9 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.70 -29.75 4.13 -446.10 -1.84 -31.59 16 14 C 0.48 19.59 3.48 87.66 0.30 19.89 16 15 O -0.57 -27.15 12.40 -3.02 -0.04 -27.19 16 16 C 0.14 4.53 1.01 -12.28 -0.01 4.51 16 17 C -0.14 -3.53 7.70 71.98 0.55 -2.98 16 18 O -0.36 -10.82 9.67 -148.98 -1.44 -12.26 16 19 C 0.01 0.27 9.49 113.37 1.08 1.35 16 20 C -0.11 -3.43 4.35 -19.87 -0.09 -3.51 16 21 C -0.11 -3.32 6.27 22.27 0.14 -3.18 16 22 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16 23 C -0.11 -2.34 10.05 22.27 0.22 -2.12 16 24 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 25 C -0.11 -2.56 9.11 22.27 0.20 -2.36 16 26 H 0.05 2.00 3.42 -2.39 -0.01 2.00 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.02 1.25 7.85 -2.39 -0.02 1.23 16 29 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.40 15.64 7.96 -92.71 -0.74 14.90 16 33 H 0.08 2.02 8.13 -2.38 -0.02 2.01 16 34 H 0.11 2.06 6.78 -2.39 -0.02 2.04 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.05 1.43 5.51 -2.39 -0.01 1.42 16 38 H 0.03 1.08 6.02 -2.39 -0.01 1.07 16 39 H 0.10 3.45 4.79 -2.91 -0.01 3.44 16 40 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.15 2.73 5.96 -2.91 -0.02 2.71 16 Total: -1.00 -66.55 332.85 3.64 -62.92 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.29 Total: 33.72 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.40 Total: -17.80 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -1.60 Total: -83.70 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.48 Total: -39.45 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -66.55 3.64 -62.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273825928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.316 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds