Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47519 * 2 1 4 4 H 1.09001 * 109.46879 * 54.99670 * 3 2 1 5 5 C 1.50697 * 109.47238 * 175.00130 * 3 2 1 6 6 H 1.08001 * 120.00129 * 119.72419 * 5 3 2 7 7 C 1.37877 * 119.99992 * 299.99571 * 5 3 2 8 8 N 1.31513 * 119.99991 * 359.72895 * 7 5 3 9 9 Si 1.86805 * 120.00053 * 179.72368 * 7 5 3 10 10 H 1.48499 * 109.46723 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46728 * 120.00006 * 9 7 5 12 12 H 1.48499 * 109.47365 * 240.00527 * 9 7 5 13 13 N 1.46495 * 109.46896 * 295.00329 * 3 2 1 14 14 C 1.34777 * 120.00487 * 84.99756 * 13 3 2 15 15 O 1.21287 * 119.99476 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00364 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.46621 * 275.16802 * 16 14 13 18 18 O 1.42899 * 109.47233 * 35.16509 * 16 14 13 19 19 C 1.42902 * 113.99621 * 60.00391 * 18 16 14 20 20 C 1.50694 * 109.47180 * 155.16861 * 16 14 13 21 21 C 1.38239 * 120.00189 * 317.07216 * 20 16 14 22 22 C 1.38232 * 120.00232 * 179.76754 * 21 20 16 23 23 C 1.38236 * 119.99767 * 0.50644 * 22 21 20 24 24 C 1.38232 * 119.99996 * 359.74525 * 23 22 21 25 25 C 1.38229 * 120.00186 * 0.02562 * 24 23 22 26 26 H 1.09007 * 109.46854 * 300.00169 * 1 2 3 27 27 H 1.09001 * 109.47205 * 59.99548 * 1 2 3 28 28 H 1.09003 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47033 * 239.99982 * 2 1 3 30 30 H 1.09003 * 109.47171 * 119.99912 * 2 1 3 31 31 H 0.97006 * 119.99864 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00187 * 264.99958 * 13 3 2 33 33 H 1.08995 * 109.47447 * 60.00019 * 17 16 14 34 34 H 1.09001 * 109.46486 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47087 * 299.99741 * 17 16 14 36 36 H 1.08994 * 109.47309 * 60.00020 * 19 18 16 37 37 H 1.08999 * 109.47074 * 180.02562 * 19 18 16 38 38 H 1.09007 * 109.47171 * 299.99272 * 19 18 16 39 39 H 1.08005 * 119.99875 * 0.02562 * 21 20 16 40 40 H 1.08000 * 120.00400 * 180.22832 * 22 21 20 41 41 H 1.08004 * 119.99917 * 179.72770 * 23 22 21 42 42 H 1.08001 * 119.99731 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1474 1.8848 -0.6545 7 6 4.1433 0.8784 1.2280 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8736 1.3777 10 1 6.5992 1.5344 0.1878 11 1 6.4051 1.6103 2.6036 12 1 6.4917 -0.5270 1.4610 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4343 16 6 0.0362 3.3377 -2.6548 17 6 0.5500 4.7788 -2.6572 18 8 0.6026 2.6283 -3.7585 19 6 0.1850 1.2646 -3.8487 20 6 -1.4658 3.3396 -2.7764 21 6 -2.1874 2.2073 -2.4474 22 6 -3.5655 2.2106 -2.5543 23 6 -4.2214 3.3428 -3.0002 24 6 -3.4995 4.4734 -3.3341 25 6 -2.1217 4.4716 -3.2227 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8291 -0.0566 2.9523 32 1 2.2719 2.1231 -1.9978 33 1 1.6364 4.7775 -2.5693 34 1 0.2610 5.2659 -3.5886 35 1 0.1180 5.3199 -1.8154 36 1 -0.8983 1.2230 -3.9614 37 1 0.6587 0.7959 -4.7113 38 1 0.4767 0.7345 -2.9419 39 1 -1.6746 1.3214 -2.1028 40 1 -4.1296 1.3272 -2.2937 41 1 -5.2979 3.3440 -3.0879 42 1 -4.0120 5.3578 -3.6829 43 1 -1.5577 5.3547 -3.4840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273825931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -54.246758 kcal Electronic energy + Delta-G solvation = -24724.896804 eV Core-core repulsion = 21349.388528 eV Total energy + Delta-G solvation = -3375.508277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65813 -38.43526 -37.10289 -35.12965 -32.82184 -32.33424 -31.02661 -30.81089 -29.32764 -27.11172 -26.19136 -24.65154 -23.12497 -22.28347 -21.55297 -19.89371 -19.26244 -17.79245 -17.20542 -16.25320 -15.84413 -15.41773 -15.22892 -14.69023 -14.52607 -14.41876 -13.92550 -13.63566 -13.59629 -12.95658 -12.70989 -12.55802 -12.43341 -12.25798 -12.00664 -11.76890 -11.59708 -11.47063 -11.28791 -11.01080 -10.88701 -10.83870 -10.80291 -10.31528 -10.20267 -10.01058 -9.65014 -9.06215 -8.83637 -8.73603 -8.67822 -8.51040 -7.82054 -6.13720 -4.22776 1.36974 1.50307 3.22725 3.24428 3.31320 3.34275 3.63124 4.02802 4.06881 4.36139 4.64014 4.92361 5.04318 5.14694 5.17852 5.24482 5.37942 5.48743 5.54396 5.57155 5.65232 5.74913 5.80247 5.89934 6.01366 6.09426 6.16885 6.32516 6.38850 6.50934 6.56517 6.60364 6.67426 6.96894 7.03933 7.06397 7.18050 7.32771 7.42298 7.60609 7.72037 7.88191 8.15224 8.65270 8.76179 9.09512 9.44702 10.91675 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.004630 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.859068 B = 6046.618696 C = 6431.526965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.698 5.698 14 C 0.483 3.517 15 O -0.535 6.535 16 C 0.136 3.864 17 C -0.136 4.136 18 O -0.364 6.364 19 C 0.010 3.990 20 C -0.092 4.092 21 C -0.083 4.083 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.103 4.103 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.393 0.607 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 4.746 -12.162 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.266 3.734 15 O -0.414 6.414 16 C 0.093 3.907 17 C -0.193 4.193 18 O -0.283 6.283 19 C -0.086 4.086 20 C -0.093 4.093 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.121 4.121 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.226 0.774 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.381 4.693 -11.408 16.122 hybrid contribution 1.090 -0.296 0.016 1.129 sum -9.292 4.397 -11.392 15.344 Atomic orbital electron populations 1.21907 0.98523 0.98035 1.01153 1.21935 0.92441 0.99884 1.02334 1.18814 0.94316 0.89110 0.81014 0.93316 1.21273 0.90676 1.38998 1.06156 0.91989 1.24880 0.98592 0.94794 0.95365 1.69905 1.35026 1.37831 1.09248 0.86411 0.84911 0.77768 0.78138 1.19693 1.20898 1.20888 1.46543 1.14538 1.54952 1.18552 1.20670 0.83380 0.80012 0.89308 1.90703 1.51446 1.59076 1.40139 1.20682 0.89602 0.94585 0.85795 1.21797 1.02682 0.91751 1.03117 1.87980 1.69050 1.23689 1.47586 1.23132 1.00089 0.82580 1.02777 1.19873 0.94383 0.94785 1.00262 1.21185 0.94214 0.98097 0.96572 1.21105 0.94313 0.98557 1.00399 1.21130 0.99601 0.93476 0.99353 1.21063 0.94004 0.98298 1.01367 1.21095 0.94460 0.97700 0.98796 0.93019 0.94447 0.95773 0.95040 0.88215 0.92639 0.77396 0.90716 0.90737 0.90236 0.93272 0.89306 0.92558 0.85914 0.86138 0.86335 0.86173 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.15 0.32 -2.69 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.50 11.31 55.43 0.63 -23.87 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -14.48 4.17 -54.93 -0.23 -14.70 16 14 C 0.48 9.53 3.47 -10.98 -0.04 9.49 16 15 O -0.54 -12.20 12.37 5.55 0.07 -12.13 16 16 C 0.14 2.18 1.00 -92.93 -0.09 2.09 16 17 C -0.14 -1.86 7.71 37.16 0.29 -1.58 16 18 O -0.36 -5.60 9.68 -35.23 -0.34 -5.94 16 19 C 0.01 0.15 9.48 101.05 0.96 1.10 16 20 C -0.09 -1.42 4.36 -104.62 -0.46 -1.87 16 21 C -0.08 -1.29 6.26 -39.58 -0.25 -1.53 16 22 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.13 -1.51 10.05 -39.59 -0.40 -1.91 16 25 C -0.10 -1.35 9.11 -39.59 -0.36 -1.71 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 27 H 0.04 0.77 3.40 -51.93 -0.18 0.59 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 7.56 7.98 -40.82 -0.33 7.23 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.83 6.77 -51.93 -0.35 0.48 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.66 5.49 -51.93 -0.28 0.38 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.89 5.98 -51.93 -0.31 0.58 16 39 H 0.12 2.06 4.81 -52.48 -0.25 1.80 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.13 1.39 5.96 -52.49 -0.31 1.08 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -29.65 332.85 -7.45 -37.10 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.05 Total: 10.71 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.52 Total: -11.67 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.40 Total: -38.58 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.27 Total: -18.07 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.65 -7.45 -37.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273825931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.142 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds