Wall clock time and date at job start Tue Mar 31 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47519 * 2 1 4 4 H 1.09001 * 109.46879 * 54.99670 * 3 2 1 5 5 C 1.50697 * 109.47238 * 175.00130 * 3 2 1 6 6 H 1.08001 * 120.00129 * 119.72419 * 5 3 2 7 7 C 1.37877 * 119.99992 * 299.99571 * 5 3 2 8 8 N 1.31513 * 119.99991 * 359.72895 * 7 5 3 9 9 Si 1.86805 * 120.00053 * 179.72368 * 7 5 3 10 10 H 1.48499 * 109.46723 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46728 * 120.00006 * 9 7 5 12 12 H 1.48499 * 109.47365 * 240.00527 * 9 7 5 13 13 N 1.46495 * 109.46896 * 295.00329 * 3 2 1 14 14 C 1.34777 * 120.00487 * 84.99756 * 13 3 2 15 15 O 1.21287 * 119.99476 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00364 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.46621 * 275.16802 * 16 14 13 18 18 O 1.42899 * 109.47233 * 35.16509 * 16 14 13 19 19 C 1.42902 * 113.99621 * 60.00391 * 18 16 14 20 20 C 1.50694 * 109.47180 * 155.16861 * 16 14 13 21 21 C 1.38239 * 120.00189 * 317.07216 * 20 16 14 22 22 C 1.38232 * 120.00232 * 179.76754 * 21 20 16 23 23 C 1.38236 * 119.99767 * 0.50644 * 22 21 20 24 24 C 1.38232 * 119.99996 * 359.74525 * 23 22 21 25 25 C 1.38229 * 120.00186 * 0.02562 * 24 23 22 26 26 H 1.09007 * 109.46854 * 300.00169 * 1 2 3 27 27 H 1.09001 * 109.47205 * 59.99548 * 1 2 3 28 28 H 1.09003 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47033 * 239.99982 * 2 1 3 30 30 H 1.09003 * 109.47171 * 119.99912 * 2 1 3 31 31 H 0.97006 * 119.99864 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00187 * 264.99958 * 13 3 2 33 33 H 1.08995 * 109.47447 * 60.00019 * 17 16 14 34 34 H 1.09001 * 109.46486 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47087 * 299.99741 * 17 16 14 36 36 H 1.08994 * 109.47309 * 60.00020 * 19 18 16 37 37 H 1.08999 * 109.47074 * 180.02562 * 19 18 16 38 38 H 1.09007 * 109.47171 * 299.99272 * 19 18 16 39 39 H 1.08005 * 119.99875 * 0.02562 * 21 20 16 40 40 H 1.08000 * 120.00400 * 180.22832 * 22 21 20 41 41 H 1.08004 * 119.99917 * 179.72770 * 23 22 21 42 42 H 1.08001 * 119.99731 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1474 1.8848 -0.6545 7 6 4.1433 0.8784 1.2280 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8736 1.3777 10 1 6.5992 1.5344 0.1878 11 1 6.4051 1.6103 2.6036 12 1 6.4917 -0.5270 1.4610 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4343 16 6 0.0362 3.3377 -2.6548 17 6 0.5500 4.7788 -2.6572 18 8 0.6026 2.6283 -3.7585 19 6 0.1850 1.2646 -3.8487 20 6 -1.4658 3.3396 -2.7764 21 6 -2.1874 2.2073 -2.4474 22 6 -3.5655 2.2106 -2.5543 23 6 -4.2214 3.3428 -3.0002 24 6 -3.4995 4.4734 -3.3341 25 6 -2.1217 4.4716 -3.2227 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8291 -0.0566 2.9523 32 1 2.2719 2.1231 -1.9978 33 1 1.6364 4.7775 -2.5693 34 1 0.2610 5.2659 -3.5886 35 1 0.1180 5.3199 -1.8154 36 1 -0.8983 1.2230 -3.9614 37 1 0.6587 0.7959 -4.7113 38 1 0.4767 0.7345 -2.9419 39 1 -1.6746 1.3214 -2.1028 40 1 -4.1296 1.3272 -2.2937 41 1 -5.2979 3.3440 -3.0879 42 1 -4.0120 5.3578 -3.6829 43 1 -1.5577 5.3547 -3.4840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273825931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:03 Heat of formation + Delta-G solvation = -72.437509 kcal Electronic energy + Delta-G solvation = -24725.685615 eV Core-core repulsion = 21349.388528 eV Total energy + Delta-G solvation = -3376.297087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97661 -39.74094 -38.37356 -36.97386 -34.27052 -33.98763 -32.75219 -31.88566 -30.42476 -29.03059 -27.33061 -26.00425 -24.90085 -23.34472 -22.92467 -21.51845 -20.89145 -19.36212 -18.34517 -17.89529 -17.23808 -17.08357 -16.45065 -16.31081 -15.97002 -15.48028 -15.27193 -15.21263 -14.71587 -14.58656 -14.16573 -13.86870 -13.68548 -13.58392 -13.38613 -13.23752 -13.12009 -12.90214 -12.80091 -12.71991 -12.69987 -12.17786 -12.07595 -12.00965 -11.84937 -11.60198 -11.21724 -11.06224 -10.57196 -10.26403 -9.78182 -9.75052 -9.61214 -8.17730 -6.34894 0.35670 0.50964 1.42578 1.44120 1.55856 1.69726 2.29771 2.46665 2.70931 2.98612 3.11778 3.49608 3.77358 3.98175 4.09822 4.16831 4.25887 4.40234 4.43138 4.46337 4.52892 4.57192 4.62892 4.69408 4.72582 4.75812 4.81351 4.98826 5.06128 5.10641 5.13725 5.21934 5.40439 5.52622 5.54485 5.59648 5.61112 5.63730 5.74000 5.82592 5.97983 6.10018 6.14596 6.72722 6.94257 7.31118 7.50772 8.87696 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.004630 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.859068 B = 6046.618696 C = 6431.526965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.696 5.696 14 C 0.484 3.516 15 O -0.570 6.570 16 C 0.144 3.856 17 C -0.136 4.136 18 O -0.364 6.364 19 C 0.010 3.990 20 C -0.115 4.115 21 C -0.107 4.107 22 C -0.137 4.137 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.108 4.108 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.401 0.599 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.115 0.885 38 H 0.033 0.967 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.531 5.922 -14.399 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.345 5.345 14 C 0.269 3.731 15 O -0.450 6.450 16 C 0.101 3.899 17 C -0.193 4.193 18 O -0.283 6.283 19 C -0.086 4.086 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.155 4.155 23 C -0.132 4.132 24 C -0.143 4.143 25 C -0.126 4.126 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.052 0.948 39 H 0.117 0.883 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.907 5.878 -13.682 18.458 hybrid contribution 1.147 -0.650 0.710 1.498 sum -9.759 5.228 -12.971 17.054 Atomic orbital electron populations 1.21744 0.97012 0.99160 1.00322 1.21761 0.93703 0.99078 1.01237 1.18385 0.93669 0.89167 0.81189 0.98409 1.21588 0.91425 1.39038 1.06534 0.91346 1.25735 1.03224 0.94315 0.94957 1.70052 1.36952 1.38482 1.09760 0.85346 0.79240 0.77859 0.78196 1.18571 1.20941 1.20381 1.46325 1.15466 1.55253 1.17441 1.21439 0.82197 0.78974 0.90513 1.90679 1.52228 1.60113 1.41969 1.20604 0.90688 0.95132 0.83483 1.21866 1.02458 0.90316 1.04706 1.87975 1.69259 1.24183 1.46895 1.23210 1.00748 0.81911 1.02727 1.19916 0.93715 0.95848 1.02071 1.21133 0.95395 0.97714 0.98257 1.21356 0.93583 1.00028 1.00534 1.21538 1.01271 0.92679 0.97750 1.21506 0.93506 0.99386 0.99950 1.21398 0.95497 0.97436 0.98279 0.95616 0.93511 0.93535 0.94175 0.90977 0.92597 0.76394 0.90982 0.87573 0.90477 0.92797 0.86723 0.94796 0.88302 0.84861 0.83203 0.82744 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.71 16 3 C 0.28 14.44 2.24 44.25 0.10 14.54 16 4 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 5 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -52.36 11.31 21.45 0.24 -52.11 16 9 Si 0.97 42.32 29.54 68.60 2.03 44.34 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 N -0.70 -29.73 4.17 -446.10 -1.86 -31.59 16 14 C 0.48 19.57 3.47 87.66 0.30 19.87 16 15 O -0.57 -27.14 12.37 -3.05 -0.04 -27.17 16 16 C 0.14 4.53 1.00 -12.29 -0.01 4.51 16 17 C -0.14 -3.53 7.71 71.98 0.56 -2.97 16 18 O -0.36 -10.81 9.68 -148.98 -1.44 -12.25 16 19 C 0.01 0.27 9.48 113.37 1.08 1.35 16 20 C -0.11 -3.42 4.36 -19.87 -0.09 -3.51 16 21 C -0.11 -3.32 6.26 22.27 0.14 -3.18 16 22 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16 23 C -0.11 -2.34 10.05 22.27 0.22 -2.12 16 24 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 25 C -0.11 -2.56 9.11 22.27 0.20 -2.36 16 26 H 0.02 1.25 7.85 -2.38 -0.02 1.23 16 27 H 0.05 2.00 3.40 -2.39 -0.01 1.99 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 3.99 5.96 -2.39 -0.01 3.98 16 31 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.40 15.63 7.98 -92.71 -0.74 14.89 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 2.05 6.77 -2.39 -0.02 2.04 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.43 5.49 -2.39 -0.01 1.42 16 37 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.03 1.08 5.98 -2.38 -0.01 1.06 16 39 H 0.10 3.45 4.81 -2.91 -0.01 3.43 16 40 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.15 2.73 5.96 -2.91 -0.02 2.71 16 Total: -1.00 -66.64 332.85 3.61 -63.03 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.29 Total: 33.51 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 4.40 Total: -17.75 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.62 Total: -83.70 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.48 Total: -39.43 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -66.64 3.61 -63.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273825931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.410 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds