Wall clock time and date at job start Tue Mar 31 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47533 * 120.00652 * 180.02562 * 14 13 3 17 17 C 1.39706 * 120.18875 * 359.72571 * 16 14 13 18 18 C 1.37794 * 119.90828 * 179.74612 * 17 16 14 19 19 C 1.38547 * 120.29779 * 0.50451 * 18 17 16 20 20 C 1.50698 * 119.80305 * 179.74239 * 19 18 17 21 21 C 1.53002 * 109.47493 * 300.02743 * 20 19 18 22 22 C 1.53001 * 109.47051 * 60.03042 * 20 19 18 23 23 C 1.38053 * 120.39276 * 359.77074 * 19 18 17 24 24 C 1.38707 * 120.08234 * 359.97438 * 23 19 18 25 25 O 1.35653 * 120.15166 * 179.97438 * 24 23 19 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 1.08004 * 120.05063 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.85186 * 180.25654 * 18 17 16 35 35 H 1.08997 * 109.47031 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47084 * 59.99908 * 21 20 19 37 37 H 1.08997 * 109.47185 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46624 * 300.00164 * 21 20 19 39 39 H 1.08999 * 109.47439 * 59.99272 * 22 20 19 40 40 H 1.09002 * 109.47345 * 180.02562 * 22 20 19 41 41 H 1.09003 * 109.46950 * 299.99232 * 22 20 19 42 42 H 1.07992 * 119.95945 * 179.97438 * 23 19 18 43 43 H 0.96706 * 114.00016 * 270.02280 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0449 3.3246 2.6273 17 6 0.9320 3.3594 3.7060 18 6 0.5636 3.9820 4.8787 19 6 -0.6875 4.5654 4.9972 20 6 -1.0810 5.2383 6.2869 21 6 -1.0346 4.2204 7.4282 22 6 -0.1082 6.3815 6.5831 23 6 -1.5760 4.5333 3.9411 24 6 -1.2198 3.9153 2.7514 25 8 -2.0919 3.8825 1.7129 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 1.9067 2.9021 3.6197 34 1 1.2516 4.0120 5.7106 35 1 -2.0917 5.6359 6.1955 36 1 -0.0239 3.8228 7.5196 37 1 -1.3188 4.7073 8.3611 38 1 -1.7277 3.4061 7.2171 39 1 -0.1412 7.1066 5.7700 40 1 -0.3925 6.8680 7.5162 41 1 0.9026 5.9838 6.6746 42 1 -2.5495 4.9898 4.0412 43 1 -2.6723 3.1090 1.7109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273846826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:47 Heat of formation + Delta-G solvation = -74.385206 kcal Electronic energy + Delta-G solvation = -23441.252434 eV Core-core repulsion = 20064.870888 eV Total energy + Delta-G solvation = -3376.381545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24828 -38.45612 -37.17277 -34.95096 -34.84304 -32.37046 -31.21969 -30.20168 -29.28275 -27.38931 -26.91107 -24.17444 -22.94607 -22.60956 -20.92572 -20.13239 -19.27954 -17.98991 -17.28588 -16.25695 -16.07243 -15.29256 -15.05139 -14.76449 -14.53614 -14.27368 -14.08361 -13.84331 -13.63006 -13.20594 -12.68229 -12.64372 -12.55089 -12.20303 -11.90813 -11.79670 -11.48749 -11.39800 -11.24071 -11.22750 -10.98442 -10.93782 -10.80832 -10.44726 -10.29349 -10.15759 -9.61740 -9.04384 -8.91528 -8.86210 -8.50593 -8.47886 -7.76046 -6.10902 -4.20331 0.96440 1.30180 3.25895 3.26786 3.31681 3.32864 4.06409 4.09675 4.29019 4.39583 4.53578 4.62508 4.92272 4.94573 5.09218 5.19623 5.20416 5.33763 5.37085 5.50070 5.57637 5.58875 5.70461 5.85563 5.91212 5.96415 5.98637 6.29343 6.39986 6.40470 6.46850 6.47976 6.67318 6.76857 7.05509 7.21876 7.38492 7.48170 7.63597 7.75677 7.88395 7.92763 8.19714 8.69780 8.80047 9.17587 9.47135 10.94449 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.003852 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.487744 B = 7266.286668 C = 8081.850860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.541 3.459 15 O -0.530 6.530 16 C -0.156 4.156 17 C -0.071 4.071 18 C -0.135 4.135 19 C -0.048 4.048 20 C -0.058 4.058 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.158 4.158 24 C 0.165 3.835 25 O -0.476 6.476 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.129 0.871 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 6.690 17.899 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.326 3.674 15 O -0.409 6.409 16 C -0.160 4.160 17 C -0.090 4.090 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.076 4.076 21 C -0.202 4.202 22 C -0.202 4.202 23 C -0.176 4.176 24 C 0.118 3.882 25 O -0.287 6.287 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.147 0.853 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.226 7.064 16.827 20.018 hybrid contribution 1.132 -0.473 0.327 1.270 sum -7.094 6.591 17.154 19.698 Atomic orbital electron populations 1.21837 0.98401 0.97947 1.01209 1.21932 0.92609 0.99800 1.02241 1.18782 0.94160 0.89132 0.80952 0.93226 1.21199 0.90731 1.39093 1.06341 0.92193 1.24881 0.98584 0.94801 0.95361 1.69886 1.35200 1.37547 1.09300 0.86518 0.84885 0.78313 0.77438 1.20177 1.21126 1.20181 1.46452 1.14450 1.55863 1.18516 1.17962 0.83187 0.79519 0.86726 1.90768 1.51284 1.59336 1.39509 1.20827 0.96098 1.02934 0.96135 1.21314 0.98852 0.96831 0.92001 1.20861 0.96383 1.00090 0.97970 1.19820 0.93641 0.96583 0.94797 1.20169 1.00059 0.95516 0.91904 1.21862 1.02430 0.98703 0.97169 1.21867 0.99236 0.97644 1.01478 1.21270 1.00750 1.03513 0.92103 1.18483 0.89021 0.94317 0.86364 1.84746 1.50528 1.48086 1.45313 0.95914 0.93072 0.94395 0.95095 0.88268 0.92509 0.78133 0.85078 0.85615 0.90385 0.92229 0.92370 0.92443 0.92375 0.92364 0.92226 0.85296 0.75014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.90 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -14.22 8.73 -34.44 -0.30 -14.52 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.70 -14.98 4.97 -55.98 -0.28 -15.25 16 14 C 0.54 11.26 6.33 -12.47 -0.08 11.18 16 15 O -0.53 -12.64 12.29 -16.60 -0.20 -12.84 16 16 C -0.16 -2.61 5.89 -104.85 -0.62 -3.23 16 17 C -0.07 -0.97 9.54 -39.20 -0.37 -1.34 16 18 C -0.14 -1.52 8.68 -39.63 -0.34 -1.86 16 19 C -0.05 -0.52 4.79 -104.58 -0.50 -1.02 16 20 C -0.06 -0.47 3.09 -91.77 -0.28 -0.76 16 21 C -0.14 -1.03 9.00 37.16 0.33 -0.69 16 22 C -0.14 -1.08 9.01 37.16 0.33 -0.75 16 23 C -0.16 -1.94 9.59 -39.48 -0.38 -2.32 16 24 C 0.16 2.54 6.72 -38.69 -0.26 2.28 16 25 O -0.48 -7.64 11.58 -40.54 -0.47 -8.11 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.39 7.14 6.57 -40.82 -0.27 6.87 16 33 H 0.13 1.62 6.41 -52.48 -0.34 1.28 16 34 H 0.13 1.12 7.07 -52.49 -0.37 0.75 16 35 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 36 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.44 7.37 -51.93 -0.38 0.05 16 42 H 0.13 1.33 7.93 -52.49 -0.42 0.91 16 43 H 0.39 4.79 9.06 45.56 0.41 5.21 16 LS Contribution 345.39 15.07 5.21 5.21 Total: -1.00 -31.47 345.39 -8.32 -39.78 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.63 Total: 10.33 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.55 Total: -10.58 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.35 Total: -39.44 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.67 Total: -20.95 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.47 -8.32 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273846826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.600 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds