Wall clock time and date at job start Tue Mar 31 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21595 * 119.99599 * 0.02562 * 14 13 3 16 16 C 1.47533 * 120.00652 * 180.02562 * 14 13 3 17 17 C 1.39706 * 120.18875 * 359.72571 * 16 14 13 18 18 C 1.37794 * 119.90828 * 179.74612 * 17 16 14 19 19 C 1.38547 * 120.29779 * 0.50451 * 18 17 16 20 20 C 1.50698 * 119.80305 * 179.74239 * 19 18 17 21 21 C 1.53002 * 109.47493 * 300.02743 * 20 19 18 22 22 C 1.53001 * 109.47051 * 60.03042 * 20 19 18 23 23 C 1.38053 * 120.39276 * 359.77074 * 19 18 17 24 24 C 1.38707 * 120.08234 * 359.97438 * 23 19 18 25 25 O 1.35653 * 120.15166 * 179.97438 * 24 23 19 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 1.08004 * 120.05063 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.85186 * 180.25654 * 18 17 16 35 35 H 1.08997 * 109.47031 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47084 * 59.99908 * 21 20 19 37 37 H 1.08997 * 109.47185 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46624 * 300.00164 * 21 20 19 39 39 H 1.08999 * 109.47439 * 59.99272 * 22 20 19 40 40 H 1.09002 * 109.47345 * 180.02562 * 22 20 19 41 41 H 1.09003 * 109.46950 * 299.99232 * 22 20 19 42 42 H 1.07992 * 119.95945 * 179.97438 * 23 19 18 43 43 H 0.96706 * 114.00016 * 270.02280 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3416 2.6318 0.4319 16 6 0.0449 3.3246 2.6273 17 6 0.9320 3.3594 3.7060 18 6 0.5636 3.9820 4.8787 19 6 -0.6875 4.5654 4.9972 20 6 -1.0810 5.2383 6.2869 21 6 -1.0346 4.2204 7.4282 22 6 -0.1082 6.3815 6.5831 23 6 -1.5760 4.5333 3.9411 24 6 -1.2198 3.9153 2.7514 25 8 -2.0919 3.8825 1.7129 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 1.9067 2.9021 3.6197 34 1 1.2516 4.0120 5.7106 35 1 -2.0917 5.6359 6.1955 36 1 -0.0239 3.8228 7.5196 37 1 -1.3188 4.7073 8.3611 38 1 -1.7277 3.4061 7.2171 39 1 -0.1412 7.1066 5.7700 40 1 -0.3925 6.8680 7.5162 41 1 0.9026 5.9838 6.6746 42 1 -2.5495 4.9898 4.0412 43 1 -2.6723 3.1090 1.7109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273846826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:46 Heat of formation + Delta-G solvation = -94.058726 kcal Electronic energy + Delta-G solvation = -23442.105541 eV Core-core repulsion = 20064.870888 eV Total energy + Delta-G solvation = -3377.234653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47972 -39.90414 -38.26308 -36.80592 -35.80235 -34.25616 -32.93709 -31.38952 -30.42153 -28.82958 -27.91559 -25.53313 -24.62874 -23.66831 -22.34050 -21.39020 -20.94175 -19.50062 -18.47919 -17.80273 -17.45297 -16.85023 -16.37820 -16.15230 -16.01332 -15.74065 -15.21105 -14.75488 -14.59965 -14.55855 -14.28518 -13.84681 -13.71755 -13.49734 -13.17398 -13.12770 -12.93929 -12.84951 -12.68567 -12.63337 -12.20326 -12.19287 -12.06562 -11.94722 -11.62700 -11.58838 -11.46369 -11.06732 -10.60419 -10.48016 -9.90336 -9.69333 -9.47275 -8.16457 -6.34327 -0.15863 0.29537 1.44273 1.46536 1.54248 2.01040 2.35192 2.62657 2.79706 3.12841 3.25016 3.69382 3.79209 3.98688 4.14453 4.28416 4.35439 4.44224 4.47918 4.49783 4.56071 4.73767 4.81963 4.88653 4.89027 5.00688 5.05965 5.06276 5.17867 5.22441 5.26704 5.34550 5.40325 5.43319 5.45696 5.55363 5.61530 5.62298 5.78154 5.82527 5.93707 6.16084 6.73026 6.82162 6.99320 7.32642 7.57835 8.88867 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.003852 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.487744 B = 7266.286668 C = 8081.850860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.552 4.552 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.702 5.702 14 C 0.537 3.463 15 O -0.571 6.571 16 C -0.189 4.189 17 C -0.070 4.070 18 C -0.128 4.128 19 C -0.033 4.033 20 C -0.056 4.056 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.157 4.157 24 C 0.150 3.850 25 O -0.497 6.497 26 H 0.046 0.954 27 H 0.025 0.975 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.150 0.850 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 7.462 21.328 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.590 4.590 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.326 3.674 15 O -0.452 6.452 16 C -0.193 4.193 17 C -0.089 4.089 18 C -0.146 4.146 19 C -0.034 4.034 20 C -0.075 4.075 21 C -0.201 4.201 22 C -0.202 4.202 23 C -0.175 4.175 24 C 0.103 3.897 25 O -0.310 6.310 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.167 0.833 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.492 7.842 20.302 23.018 hybrid contribution 0.820 -0.639 -0.655 1.229 sum -6.672 7.203 19.648 21.964 Atomic orbital electron populations 1.21662 0.96973 0.99106 1.00166 1.21774 0.93804 0.98998 1.01298 1.18364 0.93685 0.89181 0.81110 0.98676 1.21555 0.91371 1.39163 1.06886 0.91101 1.25786 1.03456 0.94279 0.94915 1.70047 1.37194 1.38238 1.09806 0.85411 0.78919 0.78429 0.77657 1.18712 1.21122 1.19754 1.46199 1.15307 1.56069 1.17613 1.18606 0.82264 0.78686 0.87870 1.90735 1.52273 1.60781 1.41418 1.20572 0.97903 1.05592 0.95197 1.21457 0.98702 0.96885 0.91855 1.21190 0.97000 0.98645 0.97748 1.20256 0.92911 0.94754 0.95445 1.20258 1.00824 0.95838 0.90567 1.21866 1.02598 0.98316 0.97291 1.21880 0.99199 0.97144 1.02017 1.21467 1.02018 1.02868 0.91139 1.18766 0.88593 0.95075 0.87239 1.84697 1.50989 1.48940 1.46358 0.93461 0.95586 0.93941 0.94053 0.90901 0.92556 0.76473 0.84138 0.82505 0.89413 0.91912 0.90757 0.92917 0.93300 0.90656 0.91906 0.83271 0.73774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.04 5.45 30.60 0.17 -5.88 16 3 C 0.28 14.83 2.24 44.25 0.10 14.93 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 5 C -0.55 -29.79 8.73 25.60 0.22 -29.57 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.91 -53.07 11.29 21.45 0.24 -52.82 16 9 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 N -0.70 -30.66 4.97 -449.28 -2.23 -32.90 16 14 C 0.54 23.19 6.33 86.69 0.55 23.74 16 15 O -0.57 -28.73 12.29 16.90 0.21 -28.52 16 16 C -0.19 -6.35 5.89 -20.01 -0.12 -6.46 16 17 C -0.07 -1.81 9.54 22.52 0.21 -1.59 16 18 C -0.13 -2.49 8.68 22.24 0.19 -2.30 16 19 C -0.03 -0.62 4.79 -19.84 -0.09 -0.72 16 20 C -0.06 -0.70 3.09 -11.54 -0.04 -0.74 16 21 C -0.14 -1.47 9.00 71.98 0.65 -0.82 16 22 C -0.15 -1.62 9.01 71.98 0.65 -0.97 16 23 C -0.16 -3.55 9.59 22.34 0.21 -3.34 16 24 C 0.15 4.59 6.72 22.84 0.15 4.74 16 25 O -0.50 -16.45 11.58 -68.76 -0.80 -17.25 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 28 H 0.04 1.89 5.64 -2.38 -0.01 1.88 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 4.09 5.95 -2.39 -0.01 4.07 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.40 14.84 6.57 -92.71 -0.61 14.23 16 33 H 0.14 3.23 6.41 -2.91 -0.02 3.21 16 34 H 0.16 2.09 7.07 -2.91 -0.02 2.07 16 35 H 0.09 0.97 7.86 -2.39 -0.02 0.95 16 36 H 0.06 0.62 7.37 -2.39 -0.02 0.60 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.67 7.37 -2.39 -0.02 0.65 16 42 H 0.15 2.72 7.93 -2.91 -0.02 2.70 16 43 H 0.40 10.39 9.06 -74.05 -0.67 9.72 16 Total: -1.00 -71.00 345.39 3.12 -67.88 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.25 Total: 31.83 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.92 Total: -12.67 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.99 Total: -85.72 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.59 Total: -45.77 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.00 3.12 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273846826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.183 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds