Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47569 * 2 1 4 4 H 1.09001 * 109.46948 * 55.00012 * 3 2 1 5 5 C 1.50699 * 109.47301 * 174.99748 * 3 2 1 6 6 H 1.08000 * 119.99983 * 119.99723 * 5 3 2 7 7 C 1.37879 * 120.00447 * 300.00301 * 5 3 2 8 8 N 1.31516 * 119.99727 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47575 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47051 * 120.00142 * 9 7 5 12 12 H 1.48510 * 109.46889 * 239.99644 * 9 7 5 13 13 N 1.46502 * 109.46979 * 294.99696 * 3 2 1 14 14 C 1.34778 * 119.99755 * 85.00259 * 13 3 2 15 15 O 1.21594 * 120.00067 * 0.02562 * 14 13 3 16 16 C 1.47529 * 120.00118 * 179.97438 * 14 13 3 17 17 C 1.39707 * 120.19009 * 359.97438 * 16 14 13 18 18 C 1.37790 * 119.90592 * 179.75000 * 17 16 14 19 19 C 1.38547 * 120.30387 * 0.23306 * 18 17 16 20 20 C 1.50699 * 119.80655 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46607 * 299.99948 * 20 19 18 22 22 C 1.52999 * 109.47319 * 59.99531 * 20 19 18 23 23 C 1.38050 * 120.38752 * 0.02562 * 19 18 17 24 24 C 1.38708 * 120.08508 * 0.02562 * 23 19 18 25 25 O 1.35659 * 120.14793 * 179.97438 * 24 23 19 26 26 H 1.09000 * 109.47613 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47159 * 300.00515 * 1 2 3 28 28 H 1.09002 * 109.46710 * 59.99918 * 1 2 3 29 29 H 1.08998 * 109.47159 * 239.99485 * 2 1 3 30 30 H 1.09007 * 109.47106 * 120.00257 * 2 1 3 31 31 H 0.97000 * 120.00381 * 180.02562 * 8 7 5 32 32 H 0.96992 * 120.00233 * 264.99437 * 13 3 2 33 33 H 1.08002 * 120.04882 * 0.03277 * 17 16 14 34 34 H 1.08008 * 119.84623 * 180.25905 * 18 17 16 35 35 H 1.08993 * 109.46998 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.46903 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.47403 * 299.99737 * 21 20 19 38 38 H 1.08993 * 109.47613 * 60.00162 * 21 20 19 39 39 H 1.09000 * 109.46610 * 60.00282 * 22 20 19 40 40 H 1.09005 * 109.47174 * 179.97438 * 22 20 19 41 41 H 1.08993 * 109.47708 * 300.00327 * 22 20 19 42 42 H 1.08001 * 119.95677 * 179.97438 * 23 19 18 43 43 H 0.96697 * 114.00392 * 90.00005 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1239 6 1 4.1473 1.8886 -0.6522 7 6 4.1434 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8797 1.3811 10 1 6.5990 1.5438 0.1932 11 1 6.4000 1.6153 2.6092 12 1 6.4961 -0.5194 1.4627 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3670 15 8 -0.3411 2.6327 -0.4317 16 6 0.0453 3.3245 -2.6274 17 6 0.9348 3.3646 -3.7040 18 6 0.5624 3.9781 -4.8802 19 6 -0.6891 4.5603 -4.9994 20 6 -1.0849 5.2278 -6.2912 21 6 -0.1126 6.3698 -6.5938 22 6 -1.0402 4.2052 -7.4283 23 6 -1.5757 4.5325 -3.9416 24 6 -1.2173 3.9202 -2.7497 25 8 -2.0874 3.8926 -1.7093 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0606 2.9503 32 1 2.2721 2.1231 -1.9977 33 1 1.9111 2.9114 -3.6160 34 1 1.2493 4.0049 -5.7134 35 1 -2.0953 5.6261 -6.1996 36 1 -0.3991 6.8529 -7.5280 37 1 -0.1444 7.0984 -5.7837 38 1 0.8980 5.9720 -6.6852 39 1 -1.7328 3.3916 -7.2126 40 1 -1.3269 4.6879 -8.3626 41 1 -0.0296 3.8073 -7.5197 42 1 -2.5494 4.9889 -4.0419 43 1 -2.6677 3.1192 -1.7022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273846829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = -74.509665 kcal Electronic energy + Delta-G solvation = -23441.479254 eV Core-core repulsion = 20065.092312 eV Total energy + Delta-G solvation = -3376.386942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24901 -38.45701 -37.17240 -34.95232 -34.84432 -32.37209 -31.22111 -30.20199 -29.28267 -27.38966 -26.91399 -24.17566 -22.94894 -22.60954 -20.92606 -20.13309 -19.28140 -17.99010 -17.29082 -16.25662 -16.07756 -15.29270 -15.05055 -14.76450 -14.53913 -14.26954 -14.08231 -13.84183 -13.62892 -13.20628 -12.68753 -12.64702 -12.55295 -12.20727 -11.90572 -11.79843 -11.49235 -11.39702 -11.25330 -11.22949 -10.96289 -10.92953 -10.83056 -10.44570 -10.27852 -10.16386 -9.61841 -9.02943 -8.91891 -8.86193 -8.50728 -8.48654 -7.76196 -6.11398 -4.20604 0.96428 1.30177 3.24079 3.26404 3.32103 3.34671 4.06419 4.09791 4.28907 4.39316 4.53515 4.62546 4.92224 4.94566 5.09166 5.19564 5.20206 5.33728 5.37164 5.49971 5.57563 5.58847 5.70494 5.85561 5.91204 5.96403 5.98630 6.29358 6.39858 6.40447 6.46727 6.47955 6.67144 6.76819 7.05332 7.21813 7.38398 7.47988 7.63761 7.75516 7.88463 7.92604 8.19426 8.69754 8.80132 9.17488 9.46986 10.94037 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.003852 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.930883 B = 7267.925456 C = 8080.762420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.541 3.459 15 O -0.530 6.530 16 C -0.156 4.156 17 C -0.071 4.071 18 C -0.135 4.135 19 C -0.048 4.048 20 C -0.058 4.058 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.158 4.158 24 C 0.165 3.835 25 O -0.476 6.476 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.129 0.871 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 6.695 -17.923 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.326 3.674 15 O -0.409 6.409 16 C -0.160 4.160 17 C -0.090 4.090 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.076 4.076 21 C -0.202 4.202 22 C -0.202 4.202 23 C -0.176 4.176 24 C 0.118 3.882 25 O -0.287 6.287 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.147 0.853 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.230 7.074 -16.864 20.054 hybrid contribution 1.124 -0.485 -0.301 1.260 sum -7.107 6.589 -17.165 19.712 Atomic orbital electron populations 1.21836 0.98401 0.97952 1.01207 1.21930 0.92613 0.99793 1.02244 1.18792 0.94206 0.89139 0.80955 0.93218 1.21271 0.90731 1.38900 1.06306 0.92087 1.24885 0.98598 0.94821 0.95378 1.69904 1.35016 1.37691 1.09307 0.86407 0.84898 0.77744 0.78127 1.19757 1.20877 1.20882 1.46452 1.14443 1.55865 1.18519 1.17961 0.83185 0.79522 0.86718 1.90768 1.51303 1.59352 1.39493 1.20832 0.96112 1.02879 0.96188 1.21313 0.98822 0.96848 0.92012 1.20862 0.96364 1.00170 0.97902 1.19819 0.93655 0.96571 0.94794 1.20168 1.00052 0.95534 0.91891 1.21867 0.99239 0.97651 1.01469 1.21861 1.02428 0.98672 0.97202 1.21272 1.00737 1.03583 0.92037 1.18486 0.89068 0.94283 0.86344 1.84746 1.50661 1.47974 1.45301 0.95909 0.93079 0.94391 0.95090 0.88267 0.92626 0.78126 0.85077 0.85614 0.90384 0.92364 0.92382 0.92219 0.92449 0.92371 0.92221 0.85296 0.75013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.10 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.70 -14.97 4.97 -55.98 -0.28 -15.25 16 14 C 0.54 11.25 6.33 -12.47 -0.08 11.17 16 15 O -0.53 -12.63 12.30 -16.59 -0.20 -12.83 16 16 C -0.16 -2.62 5.89 -104.85 -0.62 -3.23 16 17 C -0.07 -0.97 9.54 -39.20 -0.37 -1.34 16 18 C -0.13 -1.52 8.68 -39.63 -0.34 -1.86 16 19 C -0.05 -0.52 4.79 -104.58 -0.50 -1.02 16 20 C -0.06 -0.47 3.09 -91.77 -0.28 -0.76 16 21 C -0.15 -1.08 9.00 37.16 0.33 -0.75 16 22 C -0.14 -1.03 9.00 37.16 0.33 -0.69 16 23 C -0.16 -1.94 9.59 -39.48 -0.38 -2.32 16 24 C 0.16 2.54 6.72 -38.70 -0.26 2.28 16 25 O -0.48 -7.64 11.58 -40.55 -0.47 -8.11 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.68 5.95 -51.92 -0.31 2.37 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 7.14 6.57 -40.82 -0.27 6.88 16 33 H 0.13 1.62 6.40 -52.49 -0.34 1.28 16 34 H 0.13 1.12 7.07 -52.48 -0.37 0.75 16 35 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 42 H 0.13 1.33 7.93 -52.49 -0.42 0.91 16 43 H 0.39 4.80 9.06 45.56 0.41 5.22 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -31.47 345.40 -8.32 -39.79 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.63 Total: 10.28 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.55 Total: -10.57 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.35 Total: -39.40 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.67 Total: -20.95 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.47 -8.32 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273846829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.718 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds