Wall clock time and date at job start Tue Mar 31 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47569 * 2 1 4 4 H 1.09001 * 109.46948 * 55.00012 * 3 2 1 5 5 C 1.50699 * 109.47301 * 174.99748 * 3 2 1 6 6 H 1.08000 * 119.99983 * 119.99723 * 5 3 2 7 7 C 1.37879 * 120.00447 * 300.00301 * 5 3 2 8 8 N 1.31516 * 119.99727 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47575 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47051 * 120.00142 * 9 7 5 12 12 H 1.48510 * 109.46889 * 239.99644 * 9 7 5 13 13 N 1.46502 * 109.46979 * 294.99696 * 3 2 1 14 14 C 1.34778 * 119.99755 * 85.00259 * 13 3 2 15 15 O 1.21594 * 120.00067 * 0.02562 * 14 13 3 16 16 C 1.47529 * 120.00118 * 179.97438 * 14 13 3 17 17 C 1.39707 * 120.19009 * 359.97438 * 16 14 13 18 18 C 1.37790 * 119.90592 * 179.75000 * 17 16 14 19 19 C 1.38547 * 120.30387 * 0.23306 * 18 17 16 20 20 C 1.50699 * 119.80655 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46607 * 299.99948 * 20 19 18 22 22 C 1.52999 * 109.47319 * 59.99531 * 20 19 18 23 23 C 1.38050 * 120.38752 * 0.02562 * 19 18 17 24 24 C 1.38708 * 120.08508 * 0.02562 * 23 19 18 25 25 O 1.35659 * 120.14793 * 179.97438 * 24 23 19 26 26 H 1.09000 * 109.47613 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47159 * 300.00515 * 1 2 3 28 28 H 1.09002 * 109.46710 * 59.99918 * 1 2 3 29 29 H 1.08998 * 109.47159 * 239.99485 * 2 1 3 30 30 H 1.09007 * 109.47106 * 120.00257 * 2 1 3 31 31 H 0.97000 * 120.00381 * 180.02562 * 8 7 5 32 32 H 0.96992 * 120.00233 * 264.99437 * 13 3 2 33 33 H 1.08002 * 120.04882 * 0.03277 * 17 16 14 34 34 H 1.08008 * 119.84623 * 180.25905 * 18 17 16 35 35 H 1.08993 * 109.46998 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.46903 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.47403 * 299.99737 * 21 20 19 38 38 H 1.08993 * 109.47613 * 60.00162 * 21 20 19 39 39 H 1.09000 * 109.46610 * 60.00282 * 22 20 19 40 40 H 1.09005 * 109.47174 * 179.97438 * 22 20 19 41 41 H 1.08993 * 109.47708 * 300.00327 * 22 20 19 42 42 H 1.08001 * 119.95677 * 179.97438 * 23 19 18 43 43 H 0.96697 * 114.00392 * 90.00005 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1239 6 1 4.1473 1.8886 -0.6522 7 6 4.1434 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8797 1.3811 10 1 6.5990 1.5438 0.1932 11 1 6.4000 1.6153 2.6092 12 1 6.4961 -0.5194 1.4627 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3670 15 8 -0.3411 2.6327 -0.4317 16 6 0.0453 3.3245 -2.6274 17 6 0.9348 3.3646 -3.7040 18 6 0.5624 3.9781 -4.8802 19 6 -0.6891 4.5603 -4.9994 20 6 -1.0849 5.2278 -6.2912 21 6 -0.1126 6.3698 -6.5938 22 6 -1.0402 4.2052 -7.4283 23 6 -1.5757 4.5325 -3.9416 24 6 -1.2173 3.9202 -2.7497 25 8 -2.0874 3.8926 -1.7093 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0606 2.9503 32 1 2.2721 2.1231 -1.9977 33 1 1.9111 2.9114 -3.6160 34 1 1.2493 4.0049 -5.7134 35 1 -2.0953 5.6261 -6.1996 36 1 -0.3991 6.8529 -7.5280 37 1 -0.1444 7.0984 -5.7837 38 1 0.8980 5.9720 -6.6852 39 1 -1.7328 3.3916 -7.2126 40 1 -1.3269 4.6879 -8.3626 41 1 -0.0296 3.8073 -7.5197 42 1 -2.5494 4.9889 -4.0419 43 1 -2.6677 3.1192 -1.7022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273846829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:49 Heat of formation + Delta-G solvation = -94.180577 kcal Electronic energy + Delta-G solvation = -23442.332249 eV Core-core repulsion = 20065.092312 eV Total energy + Delta-G solvation = -3377.239937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48027 -39.90409 -38.26290 -36.80712 -35.80263 -34.25675 -32.93763 -31.38938 -30.42127 -28.83208 -27.91566 -25.53525 -24.63043 -23.66754 -22.34022 -21.39049 -20.94261 -19.50130 -18.48344 -17.80937 -17.45408 -16.84926 -16.37114 -16.15426 -16.01477 -15.73609 -15.20938 -14.75444 -14.60778 -14.56141 -14.28450 -13.84633 -13.71957 -13.50196 -13.18709 -13.13010 -12.92136 -12.83458 -12.72229 -12.64576 -12.20156 -12.15977 -12.06271 -11.94675 -11.62821 -11.59165 -11.46341 -11.04667 -10.61492 -10.48629 -9.90322 -9.69421 -9.47387 -8.16849 -6.34459 -0.15847 0.29533 1.43541 1.44557 1.56560 2.01002 2.35051 2.62535 2.79783 3.12666 3.24995 3.69351 3.79198 3.98649 4.14471 4.28376 4.35439 4.44238 4.47855 4.49733 4.56101 4.73697 4.81958 4.88744 4.89061 5.00643 5.05940 5.06204 5.17928 5.22468 5.26736 5.34573 5.40338 5.43326 5.45734 5.55452 5.61685 5.62333 5.78088 5.82479 5.93558 6.16022 6.73373 6.82140 6.99238 7.32601 7.57752 8.88883 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.003852 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.930883 B = 7267.925456 C = 8080.762420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.702 5.702 14 C 0.538 3.462 15 O -0.571 6.571 16 C -0.189 4.189 17 C -0.070 4.070 18 C -0.128 4.128 19 C -0.033 4.033 20 C -0.056 4.056 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.157 4.157 24 C 0.150 3.850 25 O -0.497 6.497 26 H 0.046 0.954 27 H 0.025 0.975 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.150 0.850 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 7.474 -21.347 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.352 5.352 14 C 0.326 3.674 15 O -0.452 6.452 16 C -0.193 4.193 17 C -0.089 4.089 18 C -0.146 4.146 19 C -0.034 4.034 20 C -0.075 4.075 21 C -0.202 4.202 22 C -0.201 4.201 23 C -0.175 4.175 24 C 0.103 3.897 25 O -0.310 6.310 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.167 0.833 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.512 7.860 -20.333 23.058 hybrid contribution 0.818 -0.655 0.681 1.249 sum -6.694 7.205 -19.653 21.976 Atomic orbital electron populations 1.21661 0.96974 0.99108 1.00167 1.21773 0.93807 0.98994 1.01304 1.18374 0.93720 0.89187 0.81115 0.98654 1.21607 0.91352 1.38967 1.06811 0.91105 1.25786 1.03442 0.94317 0.94945 1.70058 1.37042 1.38359 1.09840 0.85305 0.78969 0.77896 0.78206 1.18400 1.21072 1.20268 1.46200 1.15299 1.56073 1.17615 1.18604 0.82261 0.78691 0.87859 1.90734 1.52289 1.60795 1.41397 1.20575 0.97914 1.05529 0.95251 1.21456 0.98672 0.96896 0.91882 1.21191 0.96981 0.98729 0.97679 1.20255 0.92923 0.94725 0.95454 1.20257 1.00817 0.95867 0.90542 1.21880 0.99203 0.97145 1.02012 1.21865 1.02596 0.98276 0.97335 1.21468 1.02002 1.02947 0.91069 1.18770 0.88648 0.95033 0.87219 1.84697 1.51121 1.48822 1.46343 0.93463 0.95590 0.93934 0.94036 0.90910 0.92577 0.76474 0.84148 0.82506 0.89409 0.90658 0.93303 0.91900 0.92926 0.90757 0.91905 0.83269 0.73786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.78 2.24 44.24 0.10 14.88 16 4 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 5 C -0.55 -29.64 8.73 25.60 0.22 -29.41 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.91 -53.00 11.29 21.45 0.24 -52.76 16 9 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.70 -30.64 4.97 -449.28 -2.23 -32.88 16 14 C 0.54 23.18 6.33 86.69 0.55 23.72 16 15 O -0.57 -28.70 12.30 16.90 0.21 -28.49 16 16 C -0.19 -6.34 5.89 -20.01 -0.12 -6.46 16 17 C -0.07 -1.81 9.54 22.52 0.21 -1.59 16 18 C -0.13 -2.49 8.68 22.24 0.19 -2.30 16 19 C -0.03 -0.62 4.79 -19.84 -0.09 -0.71 16 20 C -0.06 -0.70 3.09 -11.54 -0.04 -0.74 16 21 C -0.15 -1.62 9.00 71.98 0.65 -0.97 16 22 C -0.14 -1.47 9.00 71.98 0.65 -0.82 16 23 C -0.16 -3.55 9.59 22.34 0.21 -3.34 16 24 C 0.15 4.59 6.72 22.84 0.15 4.74 16 25 O -0.50 -16.45 11.58 -68.83 -0.80 -17.25 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 28 H 0.04 1.89 5.65 -2.39 -0.01 1.88 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 4.08 5.95 -2.38 -0.01 4.07 16 31 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.40 14.84 6.57 -92.71 -0.61 14.23 16 33 H 0.14 3.23 6.40 -2.91 -0.02 3.21 16 34 H 0.16 2.10 7.07 -2.91 -0.02 2.07 16 35 H 0.09 0.97 7.86 -2.39 -0.02 0.95 16 36 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.06 0.67 7.37 -2.39 -0.02 0.65 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.06 0.62 7.37 -2.39 -0.02 0.60 16 42 H 0.15 2.72 7.93 -2.91 -0.02 2.70 16 43 H 0.40 10.41 9.06 -74.06 -0.67 9.74 16 Total: -1.00 -70.96 345.40 3.12 -67.84 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.25 Total: 31.65 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.92 Total: -12.60 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.99 Total: -85.63 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.59 Total: -45.74 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.96 3.12 -67.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273846829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.340 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds