Wall clock time and date at job start Tue Mar 31 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47412 * 2 1 4 4 H 1.09005 * 109.46644 * 55.00180 * 3 2 1 5 5 C 1.50697 * 109.46867 * 174.99831 * 3 2 1 6 6 H 1.08001 * 119.99911 * 120.00593 * 5 3 2 7 7 C 1.37873 * 120.00320 * 299.99899 * 5 3 2 8 8 N 1.31520 * 119.99745 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00211 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47006 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47320 * 120.00196 * 9 7 5 12 12 H 1.48497 * 109.47034 * 239.99993 * 9 7 5 13 13 N 1.46494 * 109.46826 * 294.99982 * 3 2 1 14 14 C 1.34781 * 119.99956 * 85.00278 * 13 3 2 15 15 O 1.21275 * 120.00206 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99989 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46984 * 84.99543 * 16 14 13 18 18 O 1.42904 * 109.47186 * 325.00348 * 16 14 13 19 19 C 1.52997 * 109.47337 * 204.99842 * 16 14 13 20 20 C 1.50701 * 109.47212 * 184.99952 * 19 16 14 21 21 C 1.38233 * 120.00099 * 269.72808 * 20 19 16 22 22 C 1.38239 * 119.99655 * 179.76882 * 21 20 19 23 23 C 1.38230 * 120.00228 * 0.50243 * 22 21 20 24 24 C 1.38238 * 119.99995 * 359.75228 * 23 22 21 25 25 C 1.38238 * 120.00072 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47537 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47667 * 300.00140 * 1 2 3 28 28 H 1.09006 * 109.47484 * 60.00001 * 1 2 3 29 29 H 1.09003 * 109.47083 * 239.99372 * 2 1 3 30 30 H 1.09008 * 109.46852 * 120.00397 * 2 1 3 31 31 H 0.97009 * 119.99445 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00126 * 264.99705 * 13 3 2 33 33 H 1.09003 * 109.47390 * 179.97438 * 17 16 14 34 34 H 1.09004 * 109.47759 * 300.00189 * 17 16 14 35 35 H 1.09002 * 109.46786 * 60.00315 * 17 16 14 36 36 H 0.96708 * 113.99258 * 299.99726 * 18 16 14 37 37 H 1.09002 * 109.47153 * 64.99954 * 19 16 14 38 38 H 1.09001 * 109.46832 * 305.00144 * 19 16 14 39 39 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99431 * 180.23215 * 22 21 20 41 41 H 1.07997 * 120.00220 * 179.73036 * 23 22 21 42 42 H 1.08002 * 119.99952 * 179.97438 * 24 23 22 43 43 H 1.07991 * 120.00062 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4441 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8782 1.2280 8 7 3.4060 0.3365 2.1729 9 14 6.0049 0.8809 1.3818 10 1 6.5987 1.5459 0.1942 11 1 6.3990 1.6163 2.6102 12 1 6.4969 -0.5178 1.4631 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6320 -0.4344 16 6 0.0367 3.3386 -2.6544 17 6 -0.5191 2.2952 -3.6257 18 8 1.1799 3.9690 -3.2357 19 6 -1.0359 4.3914 -2.3682 20 6 -1.5224 4.9792 -3.6677 21 6 -0.9030 6.0965 -4.1958 22 6 -1.3462 6.6327 -5.3903 23 6 -2.4155 6.0580 -6.0515 24 6 -3.0383 4.9438 -5.5208 25 6 -2.5915 4.4041 -4.3291 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8292 -0.0614 2.9499 32 1 2.2719 2.1230 -1.9977 33 1 -0.8078 2.7829 -4.5568 34 1 0.2450 1.5451 -3.8297 35 1 -1.3911 1.8143 -3.1824 36 1 1.5851 4.6437 -2.6737 37 1 -0.6130 5.1816 -1.7477 38 1 -1.8711 3.9261 -1.8446 39 1 -0.0706 6.5484 -3.6767 40 1 -0.8599 7.5034 -5.8047 41 1 -2.7645 6.4795 -6.9825 42 1 -3.8739 4.4949 -6.0371 43 1 -3.0783 3.5339 -3.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273866261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:18 Heat of formation + Delta-G solvation = -77.093814 kcal Electronic energy + Delta-G solvation = -23804.410380 eV Core-core repulsion = 20427.911381 eV Total energy + Delta-G solvation = -3376.498999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16896 -38.93751 -36.76135 -35.09594 -33.11381 -32.29157 -31.06076 -30.88917 -30.10217 -27.05192 -26.83589 -23.74499 -22.73470 -22.52507 -21.13079 -19.88860 -19.31257 -18.06898 -16.76182 -16.19012 -15.58780 -15.57492 -15.19451 -15.05654 -14.64134 -14.54599 -13.86014 -13.48052 -13.37937 -12.98044 -12.71107 -12.66689 -12.37920 -12.12763 -11.84249 -11.77586 -11.54789 -11.48644 -11.28231 -11.03040 -10.98638 -10.95302 -10.84506 -10.57474 -10.29948 -10.18415 -9.64275 -9.05576 -8.95562 -8.87745 -8.59054 -8.49768 -7.83714 -6.13931 -4.23271 1.30763 1.36398 3.22503 3.26745 3.30902 3.33700 3.68284 3.98509 4.29028 4.37362 4.76211 4.81471 4.94566 4.98838 5.09297 5.12305 5.17643 5.43535 5.46795 5.50001 5.72196 5.83991 5.85584 5.93697 6.03178 6.11254 6.22473 6.37164 6.41342 6.43762 6.45259 6.62924 6.63785 6.96215 7.02118 7.16087 7.34678 7.42750 7.53207 7.63501 7.75029 7.88895 8.16398 8.65910 8.75731 9.09915 9.44293 10.91308 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.003687 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.048693 B = 7592.716100 C = 8173.254754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.696 5.696 14 C 0.477 3.523 15 O -0.546 6.546 16 C 0.124 3.876 17 C -0.136 4.136 18 O -0.548 6.548 19 C -0.096 4.096 20 C -0.066 4.066 21 C -0.105 4.105 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.116 4.116 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.394 0.606 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.379 0.621 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 8.625 -13.825 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.344 5.344 14 C 0.260 3.740 15 O -0.426 6.426 16 C 0.080 3.920 17 C -0.194 4.194 18 O -0.354 6.354 19 C -0.134 4.134 20 C -0.066 4.066 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.134 4.134 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.226 0.774 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.836 8.073 -13.438 18.507 hybrid contribution 1.443 0.295 0.245 1.493 sum -8.394 8.368 -13.193 17.735 Atomic orbital electron populations 1.21842 0.98389 0.98043 1.01166 1.21932 0.92588 0.99824 1.02303 1.18812 0.94252 0.89226 0.81029 0.93396 1.21277 0.90723 1.38924 1.06243 0.91996 1.24892 0.98622 0.94798 0.95399 1.69911 1.35030 1.37691 1.09352 0.86404 0.84873 0.77796 0.78106 1.19705 1.20901 1.20881 1.46503 1.14602 1.54727 1.18532 1.20986 0.83384 0.80463 0.89188 1.90676 1.51374 1.60386 1.40125 1.21389 0.86122 0.92613 0.91840 1.21787 1.01270 0.97457 0.98857 1.86547 1.44385 1.57202 1.47261 1.21106 0.99884 0.98211 0.94200 1.19753 0.95322 0.95177 0.96317 1.21025 0.99285 0.95987 0.96011 1.21113 0.97158 1.00073 0.95580 1.21093 0.96863 0.96789 0.99972 1.21103 1.00073 0.96651 0.96229 1.21105 0.96822 0.99911 0.95558 0.95844 0.93181 0.94316 0.95038 0.88280 0.92633 0.77306 0.90783 0.91462 0.90823 0.77376 0.90420 0.88686 0.86222 0.86357 0.86506 0.86325 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.15 0.32 -2.71 16 2 C -0.13 -3.08 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.64 2.24 -69.09 -0.15 6.49 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -14.12 4.93 -54.94 -0.27 -14.39 16 14 C 0.48 8.97 5.26 -10.98 -0.06 8.91 16 15 O -0.55 -12.04 13.12 5.56 0.07 -11.96 16 16 C 0.12 1.80 1.01 -91.77 -0.09 1.70 16 17 C -0.14 -1.84 8.06 37.16 0.30 -1.54 16 18 O -0.55 -7.36 11.80 -35.23 -0.42 -7.77 16 19 C -0.10 -1.27 4.28 -27.88 -0.12 -1.39 16 20 C -0.07 -0.78 4.24 -104.62 -0.44 -1.22 16 21 C -0.11 -1.17 9.41 -39.58 -0.37 -1.54 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.28 7.84 -39.58 -0.31 -1.59 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 28 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.65 5.95 -51.92 -0.31 2.34 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 32 H 0.39 7.36 7.98 -40.82 -0.33 7.04 16 33 H 0.07 0.93 6.14 -51.93 -0.32 0.61 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.38 4.19 9.04 45.56 0.41 4.60 16 37 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.09 1.34 7.63 -51.93 -0.40 0.94 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.12 1.22 8.03 -52.49 -0.42 0.80 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -29.79 347.25 -8.24 -38.03 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.80 Total: 12.84 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -2.67 Total: -13.56 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.36 Total: -38.28 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.34 Total: -19.74 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.79 -8.24 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273866261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.063 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds