Wall clock time and date at job start Tue Mar 31 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47412 * 2 1 4 4 H 1.09005 * 109.46644 * 55.00180 * 3 2 1 5 5 C 1.50697 * 109.46867 * 174.99831 * 3 2 1 6 6 H 1.08001 * 119.99911 * 120.00593 * 5 3 2 7 7 C 1.37873 * 120.00320 * 299.99899 * 5 3 2 8 8 N 1.31520 * 119.99745 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00211 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47006 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47320 * 120.00196 * 9 7 5 12 12 H 1.48497 * 109.47034 * 239.99993 * 9 7 5 13 13 N 1.46494 * 109.46826 * 294.99982 * 3 2 1 14 14 C 1.34781 * 119.99956 * 85.00278 * 13 3 2 15 15 O 1.21275 * 120.00206 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99989 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46984 * 84.99543 * 16 14 13 18 18 O 1.42904 * 109.47186 * 325.00348 * 16 14 13 19 19 C 1.52997 * 109.47337 * 204.99842 * 16 14 13 20 20 C 1.50701 * 109.47212 * 184.99952 * 19 16 14 21 21 C 1.38233 * 120.00099 * 269.72808 * 20 19 16 22 22 C 1.38239 * 119.99655 * 179.76882 * 21 20 19 23 23 C 1.38230 * 120.00228 * 0.50243 * 22 21 20 24 24 C 1.38238 * 119.99995 * 359.75228 * 23 22 21 25 25 C 1.38238 * 120.00072 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47537 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47667 * 300.00140 * 1 2 3 28 28 H 1.09006 * 109.47484 * 60.00001 * 1 2 3 29 29 H 1.09003 * 109.47083 * 239.99372 * 2 1 3 30 30 H 1.09008 * 109.46852 * 120.00397 * 2 1 3 31 31 H 0.97009 * 119.99445 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00126 * 264.99705 * 13 3 2 33 33 H 1.09003 * 109.47390 * 179.97438 * 17 16 14 34 34 H 1.09004 * 109.47759 * 300.00189 * 17 16 14 35 35 H 1.09002 * 109.46786 * 60.00315 * 17 16 14 36 36 H 0.96708 * 113.99258 * 299.99726 * 18 16 14 37 37 H 1.09002 * 109.47153 * 64.99954 * 19 16 14 38 38 H 1.09001 * 109.46832 * 305.00144 * 19 16 14 39 39 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99431 * 180.23215 * 22 21 20 41 41 H 1.07997 * 120.00220 * 179.73036 * 23 22 21 42 42 H 1.08002 * 119.99952 * 179.97438 * 24 23 22 43 43 H 1.07991 * 120.00062 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4441 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8782 1.2280 8 7 3.4060 0.3365 2.1729 9 14 6.0049 0.8809 1.3818 10 1 6.5987 1.5459 0.1942 11 1 6.3990 1.6163 2.6102 12 1 6.4969 -0.5178 1.4631 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6320 -0.4344 16 6 0.0367 3.3386 -2.6544 17 6 -0.5191 2.2952 -3.6257 18 8 1.1799 3.9690 -3.2357 19 6 -1.0359 4.3914 -2.3682 20 6 -1.5224 4.9792 -3.6677 21 6 -0.9030 6.0965 -4.1958 22 6 -1.3462 6.6327 -5.3903 23 6 -2.4155 6.0580 -6.0515 24 6 -3.0383 4.9438 -5.5208 25 6 -2.5915 4.4041 -4.3291 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8292 -0.0614 2.9499 32 1 2.2719 2.1230 -1.9977 33 1 -0.8078 2.7829 -4.5568 34 1 0.2450 1.5451 -3.8297 35 1 -1.3911 1.8143 -3.1824 36 1 1.5851 4.6437 -2.6737 37 1 -0.6130 5.1816 -1.7477 38 1 -1.8711 3.9261 -1.8446 39 1 -0.0706 6.5484 -3.6767 40 1 -0.8599 7.5034 -5.8047 41 1 -2.7645 6.4795 -6.9825 42 1 -3.8739 4.4949 -6.0371 43 1 -3.0783 3.5339 -3.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273866261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:17 Heat of formation + Delta-G solvation = -96.271500 kcal Electronic energy + Delta-G solvation = -23805.241987 eV Core-core repulsion = 20427.911381 eV Total energy + Delta-G solvation = -3377.330606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45556 -40.00873 -38.03624 -36.89623 -34.36443 -33.96145 -32.74419 -31.79049 -31.16221 -28.94027 -27.87034 -25.40842 -24.25679 -23.32886 -22.26457 -21.42795 -20.91452 -19.54563 -18.11081 -17.39543 -17.28673 -16.78882 -16.43555 -16.29909 -15.99752 -15.82448 -15.29417 -14.89075 -14.60623 -14.23466 -13.90854 -13.83271 -13.53157 -13.44002 -13.37913 -13.19687 -13.02852 -12.91185 -12.85174 -12.71728 -12.61968 -12.14664 -12.07512 -11.89599 -11.76597 -11.66190 -11.59211 -11.04465 -10.57413 -10.29541 -9.71719 -9.63893 -9.48806 -8.16844 -6.33964 0.50353 0.59073 1.43134 1.44811 1.56339 1.74033 2.32650 2.53913 2.97875 3.12403 3.18681 3.67345 3.88235 3.95608 4.11333 4.16382 4.24809 4.37647 4.47954 4.53819 4.56469 4.71507 4.73866 4.75866 4.81983 4.87708 4.95202 5.05093 5.14224 5.21574 5.24672 5.26497 5.42896 5.55279 5.62293 5.65082 5.70149 5.78345 5.79726 5.90014 6.16406 6.20068 6.55178 6.74356 7.00046 7.32729 7.54370 8.88400 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.003687 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.048693 B = 7592.716100 C = 8173.254754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.694 5.694 14 C 0.475 3.525 15 O -0.580 6.580 16 C 0.141 3.859 17 C -0.134 4.134 18 O -0.546 6.546 19 C -0.088 4.088 20 C -0.080 4.080 21 C -0.117 4.117 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.127 4.127 26 H 0.045 0.955 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.389 0.611 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 9.386 -16.258 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.205 1.205 13 N -0.343 5.343 14 C 0.261 3.739 15 O -0.461 6.461 16 C 0.097 3.903 17 C -0.191 4.191 18 O -0.353 6.353 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.135 4.135 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.145 4.145 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.626 8.856 -15.905 20.593 hybrid contribution 1.322 0.116 0.984 1.652 sum -8.304 8.972 -14.921 19.290 Atomic orbital electron populations 1.21683 0.96851 0.99211 1.00337 1.21788 0.93892 0.99227 1.01181 1.18384 0.93603 0.89188 0.81428 0.98229 1.21603 0.91513 1.38831 1.06567 0.91239 1.25751 1.03210 0.94394 0.95061 1.70056 1.36928 1.38409 1.09873 0.85344 0.79281 0.77806 0.78188 1.18546 1.20934 1.20537 1.46281 1.15601 1.55011 1.17386 1.21839 0.82189 0.79517 0.90387 1.90662 1.52167 1.61390 1.41874 1.21197 0.86731 0.92985 0.89416 1.21795 1.01164 0.97068 0.99053 1.86539 1.44098 1.57469 1.47226 1.20982 0.98864 0.97610 0.95185 1.19648 0.96384 0.96083 0.95878 1.21200 0.99672 0.95930 0.96689 1.21412 0.97347 1.00639 0.95161 1.21458 0.96313 0.96386 1.00674 1.21402 1.00554 0.96719 0.95804 1.21258 0.96790 1.00309 0.96165 0.93585 0.95458 0.93604 0.94315 0.91021 0.92622 0.76148 0.89387 0.91826 0.90607 0.76143 0.90637 0.90012 0.85614 0.84388 0.84096 0.84221 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.09 2.24 44.25 0.10 14.19 16 4 H 0.00 -0.01 7.58 -2.38 -0.02 -0.03 16 5 C -0.55 -28.82 8.73 25.60 0.22 -28.60 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -52.05 11.29 21.45 0.24 -51.80 16 9 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 N -0.69 -28.35 4.93 -446.11 -2.20 -30.55 16 14 C 0.48 18.01 5.26 87.66 0.46 18.48 16 15 O -0.58 -26.26 13.12 -3.02 -0.04 -26.30 16 16 C 0.14 3.96 1.01 -11.54 -0.01 3.95 16 17 C -0.13 -3.41 8.06 71.98 0.58 -2.83 16 18 O -0.55 -13.86 11.80 -148.98 -1.76 -15.62 16 19 C -0.09 -2.30 4.28 29.85 0.13 -2.17 16 20 C -0.08 -1.80 4.24 -19.86 -0.08 -1.88 16 21 C -0.12 -2.40 9.41 22.27 0.21 -2.19 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -2.60 7.84 22.27 0.17 -2.43 16 26 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.03 1.30 7.85 -2.38 -0.02 1.29 16 28 H 0.04 1.95 5.65 -2.38 -0.01 1.93 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 3.95 5.95 -2.38 -0.01 3.94 16 31 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 32 H 0.40 14.86 7.98 -92.71 -0.74 14.12 16 33 H 0.09 2.03 6.14 -2.39 -0.01 2.01 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.39 8.11 9.04 -74.05 -0.67 7.44 16 37 H 0.07 1.95 8.08 -2.39 -0.02 1.93 16 38 H 0.08 2.33 7.63 -2.39 -0.02 2.31 16 39 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.13 2.37 8.03 -2.92 -0.02 2.35 16 Total: -1.00 -64.78 347.25 1.56 -63.22 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.39 Total: 35.82 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 3.68 Total: -18.80 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.96 Total: -82.36 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.80 Total: -41.92 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.78 1.56 -63.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273866261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.050 kcal (2) G-P(sol) polarization free energy of solvation -64.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds