Wall clock time and date at job start Tue Mar 31 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47452 * 2 1 4 4 H 1.09002 * 109.46890 * 305.00581 * 3 2 1 5 5 C 1.50698 * 109.47751 * 185.00520 * 3 2 1 6 6 H 1.07997 * 120.00018 * 240.00303 * 5 3 2 7 7 C 1.37880 * 120.00084 * 59.99556 * 5 3 2 8 8 N 1.31520 * 119.99551 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00030 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47293 * 90.00708 * 9 7 5 11 11 H 1.48501 * 109.46842 * 210.00205 * 9 7 5 12 12 H 1.48496 * 109.47462 * 330.00272 * 9 7 5 13 13 N 1.46500 * 109.46938 * 65.00099 * 3 2 1 14 14 C 1.34771 * 120.00215 * 275.00220 * 13 3 2 15 15 O 1.21276 * 120.00245 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00227 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47218 * 275.00489 * 16 14 13 18 18 O 1.42903 * 109.46442 * 35.00295 * 16 14 13 19 19 C 1.53001 * 109.47316 * 155.00058 * 16 14 13 20 20 C 1.50701 * 109.46986 * 180.02562 * 19 16 14 21 21 C 1.38239 * 119.99587 * 269.72358 * 20 19 16 22 22 C 1.38234 * 119.99749 * 179.76286 * 21 20 19 23 23 C 1.38237 * 120.00132 * 0.51786 * 22 21 20 24 24 C 1.38238 * 119.99586 * 359.74004 * 23 22 21 25 25 C 1.38233 * 120.00429 * 359.97438 * 24 23 22 26 26 H 1.08989 * 109.47747 * 59.99246 * 1 2 3 27 27 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46886 * 299.99366 * 1 2 3 29 29 H 1.09005 * 109.46886 * 240.00634 * 2 1 3 30 30 H 1.09003 * 109.47636 * 120.00662 * 2 1 3 31 31 H 0.97000 * 119.99377 * 179.97438 * 8 7 5 32 32 H 0.97007 * 120.00029 * 95.00152 * 13 3 2 33 33 H 1.08997 * 109.46848 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.46819 * 299.99633 * 17 16 14 35 35 H 1.08997 * 109.47286 * 59.99747 * 17 16 14 36 36 H 0.96700 * 114.00311 * 60.00230 * 18 16 14 37 37 H 1.08999 * 109.47164 * 300.00418 * 19 16 14 38 38 H 1.08997 * 109.47124 * 60.00119 * 19 16 14 39 39 H 1.08000 * 120.00047 * 0.02562 * 21 20 19 40 40 H 1.07995 * 119.99950 * 180.22840 * 22 21 20 41 41 H 1.07993 * 120.00343 * 179.72143 * 23 22 21 42 42 H 1.08001 * 119.99817 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00502 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1240 6 1 4.1472 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4060 0.3374 -2.1734 9 14 6.0049 0.8801 -1.3814 10 1 6.5539 -0.3520 -0.7602 11 1 6.3833 0.9215 -2.8168 12 1 6.5575 2.0720 -0.6892 13 7 1.6525 2.0974 1.2518 14 6 0.4353 2.6643 1.3671 15 8 -0.3395 2.6319 0.4346 16 6 0.0364 3.3376 2.6550 17 6 -0.5197 2.2935 3.6254 18 8 1.1795 3.9676 3.2369 19 6 -1.0361 4.3906 2.3692 20 6 -1.4345 5.0643 3.6571 21 6 -2.4738 4.5531 4.4117 22 6 -2.8361 5.1681 5.5955 23 6 -2.1660 6.3005 6.0194 24 6 -1.1301 6.8147 5.2620 25 6 -0.7640 6.1963 4.0812 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8291 -0.0604 -2.9504 32 1 2.2721 2.1230 1.9978 33 1 -0.8078 2.7804 4.5570 34 1 -1.3915 1.8130 3.1815 35 1 0.2444 1.5433 3.8290 36 1 1.5848 4.6427 2.6757 37 1 -0.6399 5.1344 1.6780 38 1 -1.9079 3.9101 1.9253 39 1 -3.0001 3.6708 4.0785 40 1 -3.6456 4.7666 6.1869 41 1 -2.4519 6.7836 6.9419 42 1 -0.6068 7.6996 5.5930 43 1 0.0450 6.5982 3.4893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273866263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:21 Heat of formation + Delta-G solvation = -77.216016 kcal Electronic energy + Delta-G solvation = -23803.098224 eV Core-core repulsion = 20426.593926 eV Total energy + Delta-G solvation = -3376.504298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15922 -38.93369 -36.75928 -35.09239 -33.08635 -32.28881 -31.06735 -30.88845 -30.14487 -27.04725 -26.81678 -23.74334 -22.73248 -22.52120 -21.13428 -19.89630 -19.31199 -18.06657 -16.76182 -16.19036 -15.58623 -15.56594 -15.19373 -15.05669 -14.64340 -14.54432 -13.85462 -13.47502 -13.39083 -12.97122 -12.69744 -12.65039 -12.38081 -12.13979 -11.84773 -11.81337 -11.52325 -11.48509 -11.27449 -11.03152 -11.00275 -10.96786 -10.82248 -10.56633 -10.30785 -10.18050 -9.64656 -9.06059 -8.95033 -8.87790 -8.59326 -8.49667 -7.83598 -6.13692 -4.23119 1.31130 1.36623 3.23376 3.27022 3.30726 3.32827 3.68334 3.98879 4.29075 4.37448 4.76671 4.81394 4.94796 4.98424 5.09234 5.11847 5.17728 5.43806 5.47269 5.49849 5.72490 5.83568 5.85005 5.93876 6.02954 6.10845 6.22072 6.37253 6.41430 6.43822 6.45381 6.62953 6.63809 6.96455 7.02166 7.16192 7.34729 7.42859 7.53340 7.63429 7.75143 7.89002 8.16504 8.66003 8.75694 9.10030 9.44351 10.91542 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.003709 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.605047 B = 7547.233220 C = 8148.811244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.696 5.696 14 C 0.476 3.524 15 O -0.546 6.546 16 C 0.124 3.876 17 C -0.137 4.137 18 O -0.548 6.548 19 C -0.095 4.095 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.394 0.606 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.378 0.622 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 8.808 13.797 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.344 5.344 14 C 0.260 3.740 15 O -0.426 6.426 16 C 0.080 3.920 17 C -0.194 4.194 18 O -0.353 6.353 19 C -0.133 4.133 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.123 4.123 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.635 8.259 13.403 18.457 hybrid contribution 1.449 0.291 -0.230 1.496 sum -8.185 8.550 13.173 17.710 Atomic orbital electron populations 1.21839 0.98388 0.98043 1.01169 1.21933 0.92589 0.99829 1.02298 1.18807 0.94228 0.89218 0.81027 0.93397 1.21241 0.90723 1.39032 1.06250 0.92052 1.24890 0.98617 0.94804 0.95379 1.69899 1.35117 1.37629 1.09344 0.86455 0.84872 0.78486 0.77339 1.20542 1.21099 1.19845 1.46506 1.14610 1.54721 1.18532 1.20990 0.83386 0.80462 0.89190 1.90678 1.51377 1.60368 1.40141 1.21394 0.86163 0.92586 0.91825 1.21775 1.01303 0.97461 0.98857 1.86546 1.44371 1.57166 1.47243 1.21091 1.00193 0.97781 0.94255 1.19745 0.95344 0.95166 0.96241 1.21093 0.97353 0.99928 0.95065 1.21098 1.00038 0.96242 0.96654 1.21092 0.96883 0.96900 0.99846 1.21112 0.97558 1.00008 0.95212 1.21014 0.99147 0.95510 0.96604 0.93179 0.95844 0.94314 0.88286 0.95041 0.92575 0.77311 0.90818 0.90808 0.91433 0.77404 0.90378 0.88844 0.86093 0.86343 0.86511 0.86355 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -14.12 4.93 -54.93 -0.27 -14.39 16 14 C 0.48 8.97 5.26 -10.98 -0.06 8.91 16 15 O -0.55 -12.05 13.23 5.56 0.07 -11.97 16 16 C 0.12 1.79 1.00 -91.77 -0.09 1.70 16 17 C -0.14 -1.83 8.25 37.16 0.31 -1.52 16 18 O -0.55 -7.36 11.56 -35.23 -0.41 -7.77 16 19 C -0.10 -1.26 4.15 -27.88 -0.12 -1.37 16 20 C -0.06 -0.77 4.33 -104.62 -0.45 -1.22 16 21 C -0.12 -1.28 7.90 -39.58 -0.31 -1.59 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.10 -1.16 9.27 -39.58 -0.37 -1.53 16 26 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.39 7.36 7.98 -40.82 -0.33 7.03 16 33 H 0.07 0.91 6.19 -51.93 -0.32 0.59 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.38 4.22 9.04 45.56 0.41 4.63 16 37 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 38 H 0.09 1.30 7.81 -51.93 -0.41 0.89 16 39 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -29.80 347.41 -8.24 -38.04 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.81 Total: 12.82 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.66 Total: -13.53 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.36 Total: -38.30 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.33 Total: -19.74 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.80 -8.24 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273866263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.181 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds