Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47452 * 2 1 4 4 H 1.09002 * 109.46890 * 305.00581 * 3 2 1 5 5 C 1.50698 * 109.47751 * 185.00520 * 3 2 1 6 6 H 1.07997 * 120.00018 * 240.00303 * 5 3 2 7 7 C 1.37880 * 120.00084 * 59.99556 * 5 3 2 8 8 N 1.31520 * 119.99551 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00030 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47293 * 90.00708 * 9 7 5 11 11 H 1.48501 * 109.46842 * 210.00205 * 9 7 5 12 12 H 1.48496 * 109.47462 * 330.00272 * 9 7 5 13 13 N 1.46500 * 109.46938 * 65.00099 * 3 2 1 14 14 C 1.34771 * 120.00215 * 275.00220 * 13 3 2 15 15 O 1.21276 * 120.00245 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00227 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47218 * 275.00489 * 16 14 13 18 18 O 1.42903 * 109.46442 * 35.00295 * 16 14 13 19 19 C 1.53001 * 109.47316 * 155.00058 * 16 14 13 20 20 C 1.50701 * 109.46986 * 180.02562 * 19 16 14 21 21 C 1.38239 * 119.99587 * 269.72358 * 20 19 16 22 22 C 1.38234 * 119.99749 * 179.76286 * 21 20 19 23 23 C 1.38237 * 120.00132 * 0.51786 * 22 21 20 24 24 C 1.38238 * 119.99586 * 359.74004 * 23 22 21 25 25 C 1.38233 * 120.00429 * 359.97438 * 24 23 22 26 26 H 1.08989 * 109.47747 * 59.99246 * 1 2 3 27 27 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46886 * 299.99366 * 1 2 3 29 29 H 1.09005 * 109.46886 * 240.00634 * 2 1 3 30 30 H 1.09003 * 109.47636 * 120.00662 * 2 1 3 31 31 H 0.97000 * 119.99377 * 179.97438 * 8 7 5 32 32 H 0.97007 * 120.00029 * 95.00152 * 13 3 2 33 33 H 1.08997 * 109.46848 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.46819 * 299.99633 * 17 16 14 35 35 H 1.08997 * 109.47286 * 59.99747 * 17 16 14 36 36 H 0.96700 * 114.00311 * 60.00230 * 18 16 14 37 37 H 1.08999 * 109.47164 * 300.00418 * 19 16 14 38 38 H 1.08997 * 109.47124 * 60.00119 * 19 16 14 39 39 H 1.08000 * 120.00047 * 0.02562 * 21 20 19 40 40 H 1.07995 * 119.99950 * 180.22840 * 22 21 20 41 41 H 1.07993 * 120.00343 * 179.72143 * 23 22 21 42 42 H 1.08001 * 119.99817 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00502 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1240 6 1 4.1472 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4060 0.3374 -2.1734 9 14 6.0049 0.8801 -1.3814 10 1 6.5539 -0.3520 -0.7602 11 1 6.3833 0.9215 -2.8168 12 1 6.5575 2.0720 -0.6892 13 7 1.6525 2.0974 1.2518 14 6 0.4353 2.6643 1.3671 15 8 -0.3395 2.6319 0.4346 16 6 0.0364 3.3376 2.6550 17 6 -0.5197 2.2935 3.6254 18 8 1.1795 3.9676 3.2369 19 6 -1.0361 4.3906 2.3692 20 6 -1.4345 5.0643 3.6571 21 6 -2.4738 4.5531 4.4117 22 6 -2.8361 5.1681 5.5955 23 6 -2.1660 6.3005 6.0194 24 6 -1.1301 6.8147 5.2620 25 6 -0.7640 6.1963 4.0812 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8291 -0.0604 -2.9504 32 1 2.2721 2.1230 1.9978 33 1 -0.8078 2.7804 4.5570 34 1 -1.3915 1.8130 3.1815 35 1 0.2444 1.5433 3.8290 36 1 1.5848 4.6427 2.6757 37 1 -0.6399 5.1344 1.6780 38 1 -1.9079 3.9101 1.9253 39 1 -3.0001 3.6708 4.0785 40 1 -3.6456 4.7666 6.1869 41 1 -2.4519 6.7836 6.9419 42 1 -0.6068 7.6996 5.5930 43 1 0.0450 6.5982 3.4893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273866263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -96.367547 kcal Electronic energy + Delta-G solvation = -23803.928697 eV Core-core repulsion = 20426.593926 eV Total energy + Delta-G solvation = -3377.334771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44801 -40.00234 -38.03341 -36.89377 -34.35646 -33.94101 -32.74576 -31.79320 -31.20242 -28.94167 -27.84227 -25.40800 -24.25465 -23.32563 -22.26114 -21.43487 -20.92012 -19.54246 -18.10997 -17.39268 -17.28018 -16.79062 -16.44185 -16.30095 -15.99239 -15.82005 -15.29234 -14.88709 -14.60175 -14.23287 -13.89605 -13.82345 -13.52296 -13.42932 -13.37516 -13.18914 -13.04702 -12.94271 -12.87937 -12.68721 -12.60103 -12.16178 -12.07772 -11.89761 -11.76596 -11.65493 -11.59420 -11.05256 -10.56699 -10.29223 -9.71563 -9.63778 -9.49212 -8.16692 -6.33913 0.50726 0.59342 1.44364 1.44724 1.55176 1.74236 2.32722 2.54033 2.98211 3.12449 3.18819 3.67631 3.87786 3.95833 4.11486 4.16299 4.24950 4.37545 4.48035 4.54859 4.56559 4.71629 4.73877 4.75767 4.82005 4.87793 4.95008 5.05118 5.14375 5.21808 5.24770 5.26460 5.42919 5.55259 5.62175 5.65181 5.70277 5.78379 5.79796 5.90112 6.16401 6.20353 6.54847 6.74168 7.00120 7.32720 7.54492 8.88380 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.003709 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.605047 B = 7547.233220 C = 8148.811244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.694 5.694 14 C 0.475 3.525 15 O -0.580 6.580 16 C 0.141 3.859 17 C -0.134 4.134 18 O -0.546 6.546 19 C -0.087 4.087 20 C -0.079 4.079 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.117 4.117 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.389 0.611 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 9.573 16.228 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.343 5.343 14 C 0.261 3.739 15 O -0.461 6.461 16 C 0.097 3.903 17 C -0.191 4.191 18 O -0.353 6.353 19 C -0.125 4.125 20 C -0.079 4.079 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.135 4.135 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.238 0.762 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.406 9.044 15.869 20.545 hybrid contribution 1.326 0.114 -0.967 1.645 sum -8.080 9.158 14.901 19.267 Atomic orbital electron populations 1.21680 0.96845 0.99214 1.00343 1.21789 0.93898 0.99226 1.01173 1.18379 0.93581 0.89183 0.81426 0.98242 1.21575 0.91525 1.38947 1.06591 0.91249 1.25751 1.03216 0.94391 0.95033 1.70047 1.36999 1.38357 1.09850 0.85393 0.79258 0.78846 0.77133 1.19819 1.21220 1.18908 1.46285 1.15611 1.55005 1.17385 1.21847 0.82191 0.79509 0.90396 1.90664 1.52176 1.61381 1.41895 1.21205 0.86758 0.92970 0.89411 1.21788 1.01211 0.97059 0.99079 1.86538 1.44101 1.57419 1.47199 1.20964 0.99156 0.97200 0.95218 1.19641 0.96504 0.95945 0.95830 1.21259 0.97283 1.00412 0.95571 1.21402 1.00490 0.96231 0.96340 1.21459 0.96257 0.96633 1.00521 1.21408 0.97808 1.00568 0.94786 1.21190 0.99491 0.95497 0.97325 0.95461 0.93580 0.93593 0.91026 0.94324 0.92613 0.76148 0.89334 0.90553 0.91798 0.76218 0.90884 0.89929 0.85548 0.84200 0.84122 0.84427 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.11 2.24 44.24 0.10 14.21 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -28.91 8.73 25.60 0.22 -28.68 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -52.08 11.29 21.45 0.24 -51.84 16 9 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.69 -28.37 4.93 -446.10 -2.20 -30.57 16 14 C 0.48 18.01 5.26 87.66 0.46 18.47 16 15 O -0.58 -26.28 13.23 -3.02 -0.04 -26.32 16 16 C 0.14 3.96 1.00 -11.54 -0.01 3.94 16 17 C -0.13 -3.40 8.25 71.98 0.59 -2.80 16 18 O -0.55 -13.89 11.56 -148.98 -1.72 -15.61 16 19 C -0.09 -2.27 4.15 29.85 0.12 -2.14 16 20 C -0.08 -1.78 4.33 -19.86 -0.09 -1.87 16 21 C -0.13 -2.58 7.90 22.27 0.18 -2.40 16 22 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 24 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 25 C -0.12 -2.41 9.27 22.27 0.21 -2.20 16 26 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.95 5.65 -2.38 -0.01 1.94 16 29 H 0.07 3.95 5.95 -2.38 -0.01 3.94 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.40 14.85 7.98 -92.70 -0.74 14.11 16 33 H 0.09 2.00 6.19 -2.39 -0.01 1.99 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.39 8.19 9.04 -74.06 -0.67 7.52 16 37 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 38 H 0.08 2.31 7.81 -2.39 -0.02 2.29 16 39 H 0.13 2.33 8.04 -2.91 -0.02 2.31 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -64.81 347.41 1.60 -63.21 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.39 Total: 35.89 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 3.68 Total: -18.80 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -1.96 Total: -82.40 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.76 Total: -41.93 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -64.81 1.60 -63.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273866263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.158 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds