Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 H 1.08996 * 109.47030 * 304.90689 * 3 2 1 5 5 C 1.50694 * 109.47262 * 184.89805 * 3 2 1 6 6 H 1.08003 * 120.00317 * 245.45243 * 5 3 2 7 7 C 1.37876 * 119.99669 * 65.45373 * 5 3 2 8 8 N 1.31512 * 120.00268 * 9.47376 * 7 5 3 9 9 Si 1.86804 * 119.99951 * 189.46612 * 7 5 3 10 10 H 1.48506 * 109.47007 * 84.99591 * 9 7 5 11 11 H 1.48495 * 109.47141 * 204.99601 * 9 7 5 12 12 H 1.48501 * 109.47163 * 324.99861 * 9 7 5 13 13 N 1.46502 * 109.46596 * 64.89962 * 3 2 1 14 14 C 1.34777 * 120.00324 * 274.99445 * 13 3 2 15 15 O 1.21281 * 119.99899 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00086 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.46859 * 85.00492 * 16 14 13 18 18 O 1.42900 * 109.47200 * 325.00183 * 16 14 13 19 19 C 1.53005 * 109.46902 * 205.00432 * 16 14 13 20 20 C 1.50697 * 109.46833 * 185.00119 * 19 16 14 21 21 C 1.38237 * 119.99925 * 90.00327 * 20 19 16 22 22 C 1.38237 * 119.99801 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00073 * 359.97123 * 22 21 20 24 24 C 1.38240 * 120.00313 * 0.27919 * 23 22 21 25 25 C 1.38237 * 119.99918 * 270.02221 * 20 19 16 26 26 H 1.08990 * 109.46737 * 299.99463 * 1 2 3 27 27 H 1.08997 * 109.47050 * 60.00377 * 1 2 3 28 28 H 1.08999 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47160 * 240.00094 * 2 1 3 30 30 H 1.08998 * 109.47143 * 120.00401 * 2 1 3 31 31 H 0.97000 * 120.00317 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99709 * 95.00471 * 13 3 2 33 33 H 1.09000 * 109.46738 * 179.97438 * 17 16 14 34 34 H 1.08998 * 109.46954 * 299.99932 * 17 16 14 35 35 H 1.09000 * 109.46821 * 60.00067 * 17 16 14 36 36 H 0.96696 * 114.00251 * 300.00623 * 18 16 14 37 37 H 1.09004 * 109.46906 * 65.00133 * 19 16 14 38 38 H 1.08998 * 109.47269 * 305.00020 * 19 16 14 39 39 H 1.07998 * 119.99979 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99859 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00167 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00147 * 179.72391 * 24 23 22 43 43 H 1.08004 * 120.00067 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9810 -0.8427 5 6 3.5421 1.4442 -0.1213 6 1 4.1494 1.8091 0.6939 7 6 4.1412 0.9801 -1.2731 8 7 3.4097 0.7116 -2.3325 9 14 5.9920 0.7329 -1.3289 10 1 6.3291 -0.6066 -0.7835 11 1 6.4619 0.8276 -2.7344 12 1 6.6562 1.7810 -0.5131 13 7 1.6504 2.0981 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3402 2.6323 0.4299 16 6 0.0323 3.3400 2.6502 17 6 0.5423 4.7825 2.6496 18 8 0.6005 2.6343 3.7553 19 6 -1.4927 3.3382 2.7737 20 6 -1.8985 4.1195 3.9967 21 6 -2.1391 5.4774 3.9011 22 6 -2.5118 6.1940 5.0229 23 6 -2.6447 5.5525 6.2402 24 6 -2.3991 4.1956 6.3369 25 6 -2.0299 3.4783 5.2143 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8312 0.3847 -3.1428 32 1 2.2687 2.1242 1.9978 33 1 0.2522 5.2708 3.5799 34 1 1.6287 4.7838 2.5616 35 1 0.1089 5.3207 1.8067 36 1 0.3205 1.7110 3.8182 37 1 -1.8487 2.3119 2.8634 38 1 -1.9295 3.7982 1.8873 39 1 -2.0357 5.9785 2.9500 40 1 -2.7001 7.2548 4.9482 41 1 -2.9363 6.1123 7.1166 42 1 -2.4986 3.6953 7.2889 43 1 -1.8413 2.4175 5.2892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273866267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -78.306635 kcal Electronic energy + Delta-G solvation = -23806.417671 eV Core-core repulsion = 20429.866080 eV Total energy + Delta-G solvation = -3376.551591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17433 -38.93921 -36.76431 -35.09605 -33.11099 -32.27179 -31.16621 -30.94218 -30.04296 -27.03629 -26.87309 -23.75362 -22.72692 -22.52161 -21.16172 -19.93984 -19.33440 -18.07676 -16.76891 -16.18792 -15.61296 -15.52317 -15.18084 -15.03346 -14.76808 -14.50977 -13.72795 -13.57422 -13.42330 -13.03532 -12.73710 -12.63621 -12.33890 -12.13907 -11.89573 -11.75350 -11.56951 -11.46254 -11.34010 -11.03990 -11.02607 -10.96726 -10.80413 -10.57640 -10.34590 -10.22533 -9.73104 -9.12878 -8.95575 -8.87330 -8.56601 -8.48959 -7.86302 -6.15938 -4.21234 1.30632 1.36317 3.24346 3.26436 3.31632 3.33417 3.68031 3.98606 4.28478 4.37970 4.75884 4.81334 4.94484 4.99198 5.09163 5.12170 5.17331 5.43224 5.47354 5.49735 5.72742 5.84248 5.87804 5.94221 6.03308 6.10952 6.25710 6.29537 6.32729 6.41268 6.45137 6.54152 6.62707 6.92540 6.96160 7.11591 7.27553 7.38736 7.49628 7.63733 7.70593 7.83408 8.05849 8.66040 8.77612 9.09859 9.44791 10.92179 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.003601 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.064629 B = 7773.263109 C = 8051.258386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.696 5.696 14 C 0.477 3.523 15 O -0.546 6.546 16 C 0.124 3.876 17 C -0.137 4.137 18 O -0.548 6.548 19 C -0.096 4.096 20 C -0.066 4.066 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.393 0.607 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.377 0.623 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 6.392 14.767 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.165 3.835 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.343 5.343 14 C 0.260 3.740 15 O -0.425 6.425 16 C 0.080 3.920 17 C -0.194 4.194 18 O -0.353 6.353 19 C -0.134 4.134 20 C -0.066 4.066 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.123 4.123 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.224 0.776 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.233 6.865 13.970 18.628 hybrid contribution 1.077 -0.757 0.146 1.324 sum -9.156 6.108 14.116 17.900 Atomic orbital electron populations 1.21837 0.98092 0.98136 1.01385 1.21854 0.92883 0.99914 1.01228 1.18815 0.94401 0.88886 0.81381 0.92683 1.21184 0.90591 1.43985 1.01806 0.92067 1.24883 0.98470 0.95133 0.94966 1.69981 1.35770 1.43783 1.02148 0.86535 0.85022 0.78757 0.77247 1.20409 1.21185 1.19876 1.46488 1.14567 1.54798 1.18494 1.20985 0.83321 0.80026 0.89662 1.90680 1.51744 1.59672 1.40401 1.21399 0.92097 0.94024 0.84444 1.21790 1.02367 0.92245 1.03031 1.86556 1.72426 1.27813 1.48510 1.21104 0.94830 1.00870 0.96548 1.19750 0.98011 0.93980 0.94850 1.21112 0.99693 0.93757 0.98797 1.21105 1.00269 0.99713 0.92951 1.21094 1.01155 0.94869 0.97590 1.21111 1.00024 0.94443 0.98367 1.21015 0.99190 0.99934 0.92178 0.94247 0.92949 0.95749 0.90218 0.94684 0.92558 0.77330 0.90818 0.91327 0.90759 0.77581 0.90499 0.88659 0.86030 0.86311 0.86506 0.86368 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.12 -2.80 5.50 -26.73 -0.15 -2.95 16 3 C 0.27 6.58 2.11 -69.08 -0.15 6.44 16 4 H 0.06 1.60 7.52 -51.93 -0.39 1.21 16 5 C -0.54 -14.12 8.66 -34.44 -0.30 -14.42 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.74 12.16 55.43 0.67 -24.07 16 9 Si 0.90 20.58 29.55 -169.99 -5.02 15.56 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.70 -14.07 4.93 -54.93 -0.27 -14.34 16 14 C 0.48 8.96 5.26 -10.98 -0.06 8.90 16 15 O -0.55 -12.02 13.12 5.56 0.07 -11.94 16 16 C 0.12 1.79 1.01 -91.77 -0.09 1.70 16 17 C -0.14 -1.88 8.06 37.16 0.30 -1.58 16 18 O -0.55 -7.21 11.79 -35.23 -0.42 -7.63 16 19 C -0.10 -1.25 4.28 -27.88 -0.12 -1.37 16 20 C -0.07 -0.78 4.24 -104.62 -0.44 -1.22 16 21 C -0.12 -1.28 7.85 -39.58 -0.31 -1.59 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.11 -1.16 9.40 -39.58 -0.37 -1.53 16 26 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 2.07 6.80 -51.93 -0.35 1.71 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 7.31 7.96 -40.82 -0.32 6.99 16 33 H 0.07 0.93 6.14 -51.93 -0.32 0.62 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.38 4.01 9.04 45.56 0.41 4.42 16 37 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.09 1.34 7.63 -51.93 -0.40 0.95 16 39 H 0.12 1.24 8.03 -52.49 -0.42 0.82 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -30.01 348.59 -8.20 -38.21 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.84 Total: 12.28 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.66 Total: -13.32 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.40 Total: -38.41 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.34 Total: -19.57 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.01 -8.20 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273866267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.094 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds