Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 H 1.08996 * 109.47030 * 304.90689 * 3 2 1 5 5 C 1.50694 * 109.47262 * 184.89805 * 3 2 1 6 6 H 1.08003 * 120.00317 * 245.45243 * 5 3 2 7 7 C 1.37876 * 119.99669 * 65.45373 * 5 3 2 8 8 N 1.31512 * 120.00268 * 9.47376 * 7 5 3 9 9 Si 1.86804 * 119.99951 * 189.46612 * 7 5 3 10 10 H 1.48506 * 109.47007 * 84.99591 * 9 7 5 11 11 H 1.48495 * 109.47141 * 204.99601 * 9 7 5 12 12 H 1.48501 * 109.47163 * 324.99861 * 9 7 5 13 13 N 1.46502 * 109.46596 * 64.89962 * 3 2 1 14 14 C 1.34777 * 120.00324 * 274.99445 * 13 3 2 15 15 O 1.21281 * 119.99899 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00086 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.46859 * 85.00492 * 16 14 13 18 18 O 1.42900 * 109.47200 * 325.00183 * 16 14 13 19 19 C 1.53005 * 109.46902 * 205.00432 * 16 14 13 20 20 C 1.50697 * 109.46833 * 185.00119 * 19 16 14 21 21 C 1.38237 * 119.99925 * 90.00327 * 20 19 16 22 22 C 1.38237 * 119.99801 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00073 * 359.97123 * 22 21 20 24 24 C 1.38240 * 120.00313 * 0.27919 * 23 22 21 25 25 C 1.38237 * 119.99918 * 270.02221 * 20 19 16 26 26 H 1.08990 * 109.46737 * 299.99463 * 1 2 3 27 27 H 1.08997 * 109.47050 * 60.00377 * 1 2 3 28 28 H 1.08999 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47160 * 240.00094 * 2 1 3 30 30 H 1.08998 * 109.47143 * 120.00401 * 2 1 3 31 31 H 0.97000 * 120.00317 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99709 * 95.00471 * 13 3 2 33 33 H 1.09000 * 109.46738 * 179.97438 * 17 16 14 34 34 H 1.08998 * 109.46954 * 299.99932 * 17 16 14 35 35 H 1.09000 * 109.46821 * 60.00067 * 17 16 14 36 36 H 0.96696 * 114.00251 * 300.00623 * 18 16 14 37 37 H 1.09004 * 109.46906 * 65.00133 * 19 16 14 38 38 H 1.08998 * 109.47269 * 305.00020 * 19 16 14 39 39 H 1.07998 * 119.99979 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99859 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00167 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00147 * 179.72391 * 24 23 22 43 43 H 1.08004 * 120.00067 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9810 -0.8427 5 6 3.5421 1.4442 -0.1213 6 1 4.1494 1.8091 0.6939 7 6 4.1412 0.9801 -1.2731 8 7 3.4097 0.7116 -2.3325 9 14 5.9920 0.7329 -1.3289 10 1 6.3291 -0.6066 -0.7835 11 1 6.4619 0.8276 -2.7344 12 1 6.6562 1.7810 -0.5131 13 7 1.6504 2.0981 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3402 2.6323 0.4299 16 6 0.0323 3.3400 2.6502 17 6 0.5423 4.7825 2.6496 18 8 0.6005 2.6343 3.7553 19 6 -1.4927 3.3382 2.7737 20 6 -1.8985 4.1195 3.9967 21 6 -2.1391 5.4774 3.9011 22 6 -2.5118 6.1940 5.0229 23 6 -2.6447 5.5525 6.2402 24 6 -2.3991 4.1956 6.3369 25 6 -2.0299 3.4783 5.2143 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8312 0.3847 -3.1428 32 1 2.2687 2.1242 1.9978 33 1 0.2522 5.2708 3.5799 34 1 1.6287 4.7838 2.5616 35 1 0.1089 5.3207 1.8067 36 1 0.3205 1.7110 3.8182 37 1 -1.8487 2.3119 2.8634 38 1 -1.9295 3.7982 1.8873 39 1 -2.0357 5.9785 2.9500 40 1 -2.7001 7.2548 4.9482 41 1 -2.9363 6.1123 7.1166 42 1 -2.4986 3.6953 7.2889 43 1 -1.8413 2.4175 5.2892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273866267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -97.848121 kcal Electronic energy + Delta-G solvation = -23807.265053 eV Core-core repulsion = 20429.866080 eV Total energy + Delta-G solvation = -3377.398974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45638 -40.00392 -38.02627 -36.88409 -34.35856 -33.95569 -32.85475 -31.77722 -31.11375 -28.96392 -27.87325 -25.41890 -24.23534 -23.32567 -22.29495 -21.44857 -20.91787 -19.54964 -18.10590 -17.41150 -17.26373 -16.71883 -16.52143 -16.30996 -15.95526 -15.81092 -15.29601 -14.93723 -14.59352 -14.22599 -13.96399 -13.70461 -13.62211 -13.42920 -13.39320 -13.28579 -13.00910 -12.93862 -12.85903 -12.64779 -12.61168 -12.18925 -12.10437 -11.88181 -11.76188 -11.70874 -11.58590 -11.10663 -10.55213 -10.29597 -9.71411 -9.64255 -9.48890 -8.20563 -6.33436 0.50686 0.59501 1.43555 1.44349 1.53887 1.73911 2.33132 2.53483 2.98223 3.10973 3.18394 3.67289 3.88954 3.95697 4.11369 4.16649 4.25073 4.37947 4.45640 4.52065 4.54487 4.70187 4.72036 4.75260 4.81384 4.87898 4.95784 5.04240 5.13386 5.21606 5.23160 5.26419 5.40586 5.52136 5.60850 5.65415 5.70522 5.74207 5.80087 5.89953 6.06956 6.20456 6.57166 6.75373 7.00363 7.32411 7.54479 8.87803 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.003601 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.064629 B = 7773.263109 C = 8051.258386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.275 3.725 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.694 5.694 14 C 0.475 3.525 15 O -0.580 6.580 16 C 0.142 3.858 17 C -0.135 4.135 18 O -0.545 6.545 19 C -0.087 4.087 20 C -0.080 4.080 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.115 4.115 26 H 0.049 0.951 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.390 0.610 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 6.707 17.466 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.172 3.828 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.343 5.343 14 C 0.261 3.739 15 O -0.461 6.461 16 C 0.098 3.902 17 C -0.192 4.192 18 O -0.352 6.352 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.133 4.133 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.239 0.761 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.071 7.182 16.711 20.791 hybrid contribution 0.960 -0.810 -0.658 1.418 sum -9.111 6.373 16.053 19.527 Atomic orbital electron populations 1.21680 0.96476 0.99440 1.00513 1.21695 0.94238 0.98830 1.00368 1.18393 0.93593 0.89208 0.81618 0.97973 1.21539 0.91544 1.43765 1.02063 0.91348 1.25739 1.03058 0.94791 0.94564 1.70123 1.37731 1.44725 1.02741 0.85469 0.79411 0.79042 0.77108 1.19517 1.21329 1.18982 1.46272 1.15549 1.55079 1.17358 1.21839 0.82157 0.79010 0.90926 1.90668 1.52572 1.60629 1.42208 1.21165 0.93143 0.93758 0.82150 1.21794 1.01799 0.91827 1.03814 1.86548 1.72447 1.28889 1.47296 1.20975 0.93382 1.01278 0.96882 1.19655 0.99585 0.94270 0.94518 1.21257 1.00157 0.93720 0.99523 1.21390 0.99680 1.00783 0.92714 1.21458 1.00092 0.95015 0.98287 1.21423 0.99380 0.94810 0.98917 1.21205 0.99306 1.00624 0.92179 0.93240 0.95643 0.93238 0.93172 0.93203 0.92615 0.76132 0.89297 0.92055 0.90879 0.76090 0.90232 0.90196 0.85885 0.84362 0.84134 0.84295 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.51 71.98 0.61 -4.68 16 2 C -0.11 -5.33 5.50 30.60 0.17 -5.16 16 3 C 0.28 13.94 2.11 44.24 0.09 14.04 16 4 H 0.00 0.14 7.52 -2.39 -0.02 0.12 16 5 C -0.55 -29.23 8.66 25.60 0.22 -29.01 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.03 5.16 84.65 0.44 1.47 16 8 N -0.92 -52.94 12.16 21.45 0.26 -52.68 16 9 Si 0.96 42.24 29.55 68.60 2.03 44.27 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 N -0.69 -28.22 4.93 -446.11 -2.20 -30.42 16 14 C 0.48 17.98 5.26 87.66 0.46 18.44 16 15 O -0.58 -26.28 13.12 -3.03 -0.04 -26.32 16 16 C 0.14 3.98 1.01 -11.54 -0.01 3.97 16 17 C -0.14 -3.60 8.06 71.98 0.58 -3.02 16 18 O -0.54 -13.32 11.79 -148.98 -1.76 -15.08 16 19 C -0.09 -2.22 4.28 29.85 0.13 -2.09 16 20 C -0.08 -1.79 4.24 -19.87 -0.08 -1.87 16 21 C -0.13 -2.67 7.85 22.27 0.17 -2.49 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 24 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 25 C -0.12 -2.29 9.40 22.27 0.21 -2.08 16 26 H 0.05 1.98 5.65 -2.39 -0.01 1.97 16 27 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.67 6.80 -2.39 -0.02 2.66 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.40 14.73 7.96 -92.70 -0.74 13.99 16 33 H 0.09 2.12 6.14 -2.39 -0.01 2.10 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.39 7.42 9.04 -74.06 -0.67 6.75 16 37 H 0.08 1.94 8.09 -2.38 -0.02 1.92 16 38 H 0.08 2.28 7.63 -2.39 -0.02 2.26 16 39 H 0.12 2.41 8.03 -2.91 -0.02 2.39 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -65.84 348.59 1.56 -64.28 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -0.39 Total: 34.31 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.66 Total: -18.36 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -1.94 Total: -83.10 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.80 Total: -41.40 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -65.84 1.56 -64.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273866267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.564 kcal (2) G-P(sol) polarization free energy of solvation -65.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds