Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 H 1.08995 * 109.47516 * 304.99870 * 3 2 1 5 5 C 1.50704 * 109.46690 * 184.99853 * 3 2 1 6 6 H 1.07997 * 119.99933 * 239.99909 * 5 3 2 7 7 C 1.37875 * 120.00089 * 60.00575 * 5 3 2 8 8 N 1.31516 * 119.99668 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00144 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47051 * 89.99757 * 9 7 5 11 11 H 1.48504 * 109.46985 * 210.00015 * 9 7 5 12 12 H 1.48506 * 109.46788 * 329.99435 * 9 7 5 13 13 N 1.46505 * 109.46790 * 65.00239 * 3 2 1 14 14 C 1.34776 * 119.99750 * 274.99281 * 13 3 2 15 15 O 1.21585 * 120.00068 * 0.02562 * 14 13 3 16 16 C 1.47538 * 119.99944 * 180.02562 * 14 13 3 17 17 C 1.39712 * 120.18688 * 0.02562 * 16 14 13 18 18 C 1.37789 * 119.90415 * 179.97438 * 17 16 14 19 19 C 1.38554 * 120.30156 * 0.02562 * 18 17 16 20 20 C 1.38050 * 120.38739 * 359.97438 * 19 18 17 21 21 C 1.38702 * 120.08676 * 359.73605 * 20 19 18 22 22 O 1.35663 * 120.15615 * 180.28220 * 21 20 19 23 23 C 1.42904 * 116.99163 * 354.57960 * 22 21 20 24 24 C 1.52998 * 109.47071 * 84.88090 * 23 22 21 25 25 C 1.53003 * 109.46756 * 204.87681 * 23 22 21 26 26 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46957 * 59.99522 * 1 2 3 28 28 H 1.09003 * 109.46941 * 300.00100 * 1 2 3 29 29 H 1.09001 * 109.47181 * 119.99984 * 2 1 3 30 30 H 1.08998 * 109.47216 * 240.00299 * 2 1 3 31 31 H 0.96999 * 119.99855 * 180.02562 * 8 7 5 32 32 H 0.96994 * 119.99902 * 95.00263 * 13 3 2 33 33 H 1.08001 * 120.05122 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.84785 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.80178 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.95588 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47439 * 324.87520 * 23 22 21 38 38 H 1.09003 * 109.46832 * 179.97438 * 24 23 22 39 39 H 1.09003 * 109.46987 * 299.99493 * 24 23 22 40 40 H 1.08996 * 109.47454 * 59.99439 * 24 23 22 41 41 H 1.09001 * 109.47286 * 60.00376 * 25 23 22 42 42 H 1.08993 * 109.47040 * 179.97438 * 25 23 22 43 43 H 1.08996 * 109.47016 * 300.00099 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5547 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0738 -0.6901 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3415 2.6319 0.4321 16 6 0.0450 3.3244 2.6275 17 6 0.9345 3.3645 3.7041 18 6 0.5643 3.9829 4.8785 19 6 -0.6872 4.5654 4.9974 20 6 -1.5758 4.5329 3.9414 21 6 -1.2176 3.9200 2.7498 22 8 -2.0876 3.8923 1.7092 23 6 -3.3991 4.4078 1.9465 24 6 -3.3941 5.9250 1.7496 25 6 -4.3833 3.7694 0.9642 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8292 -0.0617 -2.9495 32 1 2.2719 2.1231 1.9978 33 1 1.9109 2.9114 3.6161 34 1 1.2525 4.0129 5.7103 35 1 -0.9692 5.0476 5.9217 36 1 -2.5494 4.9896 4.0416 37 1 -3.7020 4.1748 2.9672 38 1 -4.3946 6.3181 1.9301 39 1 -2.6929 6.3798 2.4494 40 1 -3.0912 6.1580 0.7289 41 1 -4.3870 2.6884 1.1044 42 1 -5.3837 4.1622 1.1454 43 1 -4.0804 4.0024 -0.0566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273921970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -57.753080 kcal Electronic energy + Delta-G solvation = -23847.507142 eV Core-core repulsion = 20471.846820 eV Total energy + Delta-G solvation = -3375.660322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41129 -38.60950 -37.33797 -34.90681 -33.18426 -32.43153 -31.43311 -30.21793 -29.62933 -27.33326 -26.87256 -23.82465 -23.31242 -22.51854 -20.84043 -20.29813 -19.18226 -18.42325 -17.19162 -16.00334 -15.85970 -15.45561 -15.06988 -14.74589 -14.65149 -14.31747 -14.21806 -13.64763 -13.32899 -12.97801 -12.70959 -12.61056 -12.36040 -12.31614 -11.96433 -11.76112 -11.71263 -11.38800 -11.27951 -11.18248 -10.93296 -10.81512 -10.76182 -10.67006 -10.25351 -10.08802 -9.55096 -8.97387 -8.92939 -8.82615 -8.43407 -8.10309 -7.65976 -6.06848 -4.15877 1.07944 1.47587 3.26342 3.27483 3.34311 3.36554 3.42868 4.16226 4.30181 4.43087 4.66804 4.77734 4.83489 4.90376 5.00383 5.13754 5.24374 5.30753 5.43892 5.47671 5.56771 5.61584 5.72559 5.78861 5.94062 6.04025 6.12333 6.30310 6.33199 6.47794 6.48700 6.56177 6.76094 6.77963 7.14119 7.29375 7.46660 7.57053 7.57408 7.69659 7.83782 7.98910 8.25497 8.78242 8.86631 9.28476 9.52162 10.98499 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.004376 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.272124 B = 6397.158580 C = 7234.384041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.543 3.457 15 O -0.525 6.525 16 C -0.161 4.161 17 C -0.050 4.050 18 C -0.171 4.171 19 C -0.065 4.065 20 C -0.227 4.227 21 C 0.183 3.817 22 O -0.268 6.268 23 C 0.070 3.930 24 C -0.180 4.180 25 C -0.146 4.146 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 8.154 13.371 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.356 5.356 14 C 0.328 3.672 15 O -0.403 6.403 16 C -0.165 4.165 17 C -0.069 4.069 18 C -0.189 4.189 19 C -0.083 4.083 20 C -0.246 4.246 21 C 0.134 3.866 22 O -0.179 6.179 23 C 0.014 3.986 24 C -0.237 4.237 25 C -0.203 4.203 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.688 7.946 12.243 18.699 hybrid contribution 1.233 0.117 0.542 1.351 sum -10.455 8.063 12.785 18.378 Atomic orbital electron populations 1.21833 0.98308 0.97860 1.01377 1.21931 0.92661 0.99836 1.02133 1.18759 0.94051 0.89124 0.81027 0.93286 1.21244 0.90797 1.38851 1.06223 0.92163 1.24877 0.98494 0.94888 0.95395 1.69902 1.35033 1.37670 1.09362 0.86474 0.85041 0.78393 0.77341 1.20590 1.21114 1.19886 1.46415 1.14475 1.56310 1.18444 1.17884 0.83033 0.79574 0.86678 1.90782 1.51048 1.59101 1.39411 1.19842 0.93722 1.05791 0.97101 1.21279 0.98375 0.95593 0.91683 1.20945 0.97321 1.02376 0.98278 1.21012 0.93218 0.96481 0.97631 1.21232 1.01918 1.07373 0.94060 1.19056 0.89288 0.91652 0.86560 1.86498 1.21200 1.76836 1.33359 1.22497 0.82319 0.93857 0.99958 1.22390 1.02394 0.95209 1.03700 1.21805 0.96874 1.01636 1.00028 0.96052 0.93157 0.94159 0.95143 0.88368 0.92634 0.78241 0.84851 0.85653 0.85868 0.85126 0.91289 0.91264 0.91996 0.91157 0.91543 0.90968 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.32 16 3 C 0.27 7.04 2.24 -69.08 -0.15 6.89 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.71 -15.43 4.97 -55.97 -0.28 -15.71 16 14 C 0.54 11.75 6.33 -12.47 -0.08 11.67 16 15 O -0.53 -13.05 12.29 -16.59 -0.20 -13.25 16 16 C -0.16 -2.82 5.89 -104.84 -0.62 -3.44 16 17 C -0.05 -0.71 9.54 -39.20 -0.37 -1.09 16 18 C -0.17 -1.97 10.02 -39.63 -0.40 -2.37 16 19 C -0.07 -0.71 10.03 -39.53 -0.40 -1.10 16 20 C -0.23 -2.81 8.23 -39.48 -0.32 -3.14 16 21 C 0.18 2.95 6.61 -38.70 -0.26 2.70 16 22 O -0.27 -4.56 7.87 -40.57 -0.32 -4.88 16 23 C 0.07 0.84 2.85 -26.73 -0.08 0.77 16 24 C -0.18 -1.82 9.17 37.16 0.34 -1.48 16 25 C -0.15 -1.61 9.56 37.16 0.36 -1.25 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 28 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.38 7.29 6.57 -40.82 -0.27 7.02 16 33 H 0.13 1.69 6.40 -52.49 -0.34 1.35 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.30 5.43 -52.49 -0.28 1.01 16 37 H 0.07 0.71 6.32 -51.93 -0.33 0.38 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.63 6.90 -51.93 -0.36 0.27 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -31.86 343.53 -8.55 -40.41 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.32 Total: 7.81 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.20 Total: -10.93 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.35 Total: -40.12 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.52 Total: -18.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.86 -8.55 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.344 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds