Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 H 1.08995 * 109.47516 * 304.99870 * 3 2 1 5 5 C 1.50704 * 109.46690 * 184.99853 * 3 2 1 6 6 H 1.07997 * 119.99933 * 239.99909 * 5 3 2 7 7 C 1.37875 * 120.00089 * 60.00575 * 5 3 2 8 8 N 1.31516 * 119.99668 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00144 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47051 * 89.99757 * 9 7 5 11 11 H 1.48504 * 109.46985 * 210.00015 * 9 7 5 12 12 H 1.48506 * 109.46788 * 329.99435 * 9 7 5 13 13 N 1.46505 * 109.46790 * 65.00239 * 3 2 1 14 14 C 1.34776 * 119.99750 * 274.99281 * 13 3 2 15 15 O 1.21585 * 120.00068 * 0.02562 * 14 13 3 16 16 C 1.47538 * 119.99944 * 180.02562 * 14 13 3 17 17 C 1.39712 * 120.18688 * 0.02562 * 16 14 13 18 18 C 1.37789 * 119.90415 * 179.97438 * 17 16 14 19 19 C 1.38554 * 120.30156 * 0.02562 * 18 17 16 20 20 C 1.38050 * 120.38739 * 359.97438 * 19 18 17 21 21 C 1.38702 * 120.08676 * 359.73605 * 20 19 18 22 22 O 1.35663 * 120.15615 * 180.28220 * 21 20 19 23 23 C 1.42904 * 116.99163 * 354.57960 * 22 21 20 24 24 C 1.52998 * 109.47071 * 84.88090 * 23 22 21 25 25 C 1.53003 * 109.46756 * 204.87681 * 23 22 21 26 26 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46957 * 59.99522 * 1 2 3 28 28 H 1.09003 * 109.46941 * 300.00100 * 1 2 3 29 29 H 1.09001 * 109.47181 * 119.99984 * 2 1 3 30 30 H 1.08998 * 109.47216 * 240.00299 * 2 1 3 31 31 H 0.96999 * 119.99855 * 180.02562 * 8 7 5 32 32 H 0.96994 * 119.99902 * 95.00263 * 13 3 2 33 33 H 1.08001 * 120.05122 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.84785 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.80178 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.95588 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47439 * 324.87520 * 23 22 21 38 38 H 1.09003 * 109.46832 * 179.97438 * 24 23 22 39 39 H 1.09003 * 109.46987 * 299.99493 * 24 23 22 40 40 H 1.08996 * 109.47454 * 59.99439 * 24 23 22 41 41 H 1.09001 * 109.47286 * 60.00376 * 25 23 22 42 42 H 1.08993 * 109.47040 * 179.97438 * 25 23 22 43 43 H 1.08996 * 109.47016 * 300.00099 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5547 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0738 -0.6901 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3415 2.6319 0.4321 16 6 0.0450 3.3244 2.6275 17 6 0.9345 3.3645 3.7041 18 6 0.5643 3.9829 4.8785 19 6 -0.6872 4.5654 4.9974 20 6 -1.5758 4.5329 3.9414 21 6 -1.2176 3.9200 2.7498 22 8 -2.0876 3.8923 1.7092 23 6 -3.3991 4.4078 1.9465 24 6 -3.3941 5.9250 1.7496 25 6 -4.3833 3.7694 0.9642 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8292 -0.0617 -2.9495 32 1 2.2719 2.1231 1.9978 33 1 1.9109 2.9114 3.6161 34 1 1.2525 4.0129 5.7103 35 1 -0.9692 5.0476 5.9217 36 1 -2.5494 4.9896 4.0416 37 1 -3.7020 4.1748 2.9672 38 1 -4.3946 6.3181 1.9301 39 1 -2.6929 6.3798 2.4494 40 1 -3.0912 6.1580 0.7289 41 1 -4.3870 2.6884 1.1044 42 1 -5.3837 4.1622 1.1454 43 1 -4.0804 4.0024 -0.0566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273921970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -76.808794 kcal Electronic energy + Delta-G solvation = -23848.333460 eV Core-core repulsion = 20471.846820 eV Total energy + Delta-G solvation = -3376.486640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58269 -40.15801 -38.44323 -36.83717 -34.35074 -34.10266 -33.14875 -31.64851 -30.69732 -28.86851 -28.17698 -25.39845 -24.61326 -23.95438 -22.01039 -21.80227 -20.97053 -19.72441 -18.65012 -17.60158 -17.34636 -16.72458 -16.53796 -16.14687 -15.91924 -15.71272 -15.67267 -14.86818 -14.57782 -14.44712 -14.39212 -13.79513 -13.61463 -13.42715 -13.21921 -13.18031 -13.09869 -12.89625 -12.75196 -12.71952 -12.65056 -12.20812 -12.15374 -12.05199 -11.75553 -11.60666 -11.58502 -11.04299 -10.59666 -10.45984 -10.00661 -9.57454 -9.12542 -8.15170 -6.33001 -0.02081 0.47277 1.44629 1.45835 1.56328 2.12647 2.29242 2.37490 2.69038 2.97616 3.14170 3.77895 3.84969 3.89109 3.99411 4.11630 4.18830 4.29281 4.47369 4.48182 4.54476 4.55735 4.66960 4.74847 4.79545 4.83208 4.89302 4.91403 5.06932 5.15992 5.23398 5.25039 5.32008 5.38752 5.44309 5.51227 5.56427 5.65045 5.79614 5.85875 5.96163 6.17292 6.57227 6.74934 7.06035 7.34513 7.65609 8.90522 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.004376 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.272124 B = 6397.158580 C = 7234.384041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.973 3.027 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.538 3.462 15 O -0.570 6.570 16 C -0.202 4.202 17 C -0.054 4.054 18 C -0.164 4.164 19 C -0.047 4.047 20 C -0.224 4.224 21 C 0.164 3.836 22 O -0.309 6.309 23 C 0.059 3.941 24 C -0.173 4.173 25 C -0.145 4.145 26 H 0.045 0.955 27 H 0.023 0.977 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.109 0.891 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 9.420 17.077 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.355 5.355 14 C 0.327 3.673 15 O -0.451 6.451 16 C -0.206 4.206 17 C -0.073 4.073 18 C -0.182 4.182 19 C -0.065 4.065 20 C -0.242 4.242 21 C 0.116 3.884 22 O -0.222 6.222 23 C 0.004 3.996 24 C -0.230 4.230 25 C -0.202 4.202 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.582 9.225 15.996 21.797 hybrid contribution 1.101 -0.208 -0.546 1.246 sum -10.481 9.016 15.449 20.732 Atomic orbital electron populations 1.21643 0.97191 0.98883 1.00021 1.21775 0.93538 0.99218 1.01248 1.18340 0.93708 0.89037 0.81180 0.98821 1.21573 0.91269 1.39027 1.06819 0.91080 1.25797 1.03499 0.94295 0.94886 1.70063 1.37127 1.38320 1.09892 0.85338 0.78862 0.78919 0.77165 1.19490 1.21225 1.18898 1.46169 1.15320 1.56508 1.17551 1.18598 0.82071 0.78735 0.87923 1.90743 1.52153 1.60739 1.41500 1.19641 0.95965 1.08829 0.96181 1.21445 0.98112 0.95950 0.91801 1.21373 0.98276 1.00670 0.97874 1.21586 0.92120 0.94346 0.98437 1.21546 1.03448 1.06414 0.92788 1.19364 0.88878 0.92391 0.87792 1.86457 1.23158 1.77654 1.34926 1.22850 0.80573 0.94921 1.01260 1.22353 1.04306 0.93904 1.02456 1.21855 0.98693 1.00922 0.98774 0.93596 0.95754 0.94265 0.94094 0.90845 0.92599 0.76561 0.84200 0.82080 0.81399 0.82474 0.89009 0.88024 0.91767 0.93289 0.93016 0.87295 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.51 71.98 0.61 -5.27 16 2 C -0.12 -6.22 5.45 30.60 0.17 -6.05 16 3 C 0.28 15.32 2.24 44.25 0.10 15.42 16 4 H -0.01 -0.40 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -30.17 8.73 25.60 0.22 -29.95 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -53.88 11.29 21.45 0.24 -53.63 16 9 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 13 N -0.71 -32.15 4.97 -449.26 -2.23 -34.38 16 14 C 0.54 24.60 6.33 86.70 0.55 25.15 16 15 O -0.57 -30.58 12.29 16.93 0.21 -30.37 16 16 C -0.20 -7.22 5.89 -20.01 -0.12 -7.33 16 17 C -0.05 -1.46 9.54 22.52 0.21 -1.24 16 18 C -0.16 -3.11 10.02 22.24 0.22 -2.89 16 19 C -0.05 -0.79 10.03 22.30 0.22 -0.57 16 20 C -0.22 -4.85 8.23 22.34 0.18 -4.67 16 21 C 0.16 5.26 6.61 22.84 0.15 5.41 16 22 O -0.31 -10.92 7.87 -68.87 -0.54 -11.46 16 23 C 0.06 1.39 2.85 30.59 0.09 1.48 16 24 C -0.17 -3.28 9.17 71.98 0.66 -2.62 16 25 C -0.15 -3.23 9.56 71.98 0.69 -2.54 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.02 1.27 7.84 -2.39 -0.02 1.25 16 28 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 4.23 5.95 -2.39 -0.01 4.22 16 31 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 32 H 0.40 15.46 6.57 -92.71 -0.61 14.85 16 33 H 0.14 3.38 6.40 -2.91 -0.02 3.36 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.16 2.48 5.43 -2.91 -0.02 2.46 16 37 H 0.09 1.67 6.32 -2.39 -0.02 1.66 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.17 6.90 -2.39 -0.02 1.16 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -75.31 343.53 4.52 -70.79 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.41 Total: 28.44 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 4.41 Total: -14.39 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -1.99 Total: -88.02 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.33 Total: -41.83 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -75.31 4.52 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.020 kcal (2) G-P(sol) polarization free energy of solvation -75.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds