Wall clock time and date at job start Tue Mar 31 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47185 * 2 1 4 4 N 1.46499 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00036 * 84.96339 * 4 3 2 6 6 O 1.21692 * 119.99708 * 180.02562 * 5 4 3 7 7 C 1.46368 * 120.00063 * 0.02562 * 5 4 3 8 8 H 1.08007 * 120.00205 * 5.08273 * 7 5 4 9 9 C 1.40045 * 120.00225 * 185.08361 * 7 5 4 10 10 N 1.30672 * 120.00128 * 354.81069 * 9 7 5 11 11 Si 1.86795 * 120.00404 * 174.81456 * 9 7 5 12 12 H 1.48498 * 109.47395 * 94.99384 * 11 9 7 13 13 H 1.48504 * 109.47299 * 214.99638 * 11 9 7 14 14 H 1.48506 * 109.47093 * 334.99249 * 11 9 7 15 15 C 1.46504 * 119.99895 * 264.96806 * 4 3 2 16 16 H 1.09000 * 109.47063 * 126.07595 * 15 4 3 17 17 C 1.53002 * 109.47019 * 6.07356 * 15 4 3 18 18 C 1.50697 * 109.47056 * 246.07614 * 15 4 3 19 19 C 1.38167 * 120.02806 * 26.45741 * 18 15 4 20 20 C 1.38244 * 120.05424 * 179.97438 * 19 18 15 21 21 C 1.38281 * 120.11416 * 359.97438 * 20 19 18 22 22 C 1.38121 * 120.05700 * 0.02562 * 21 20 19 23 23 C 1.38708 * 120.02815 * 206.18850 * 18 15 4 24 24 O 1.35902 * 120.05727 * 359.97438 * 23 18 15 25 25 C 1.42900 * 117.00279 * 179.97438 * 24 23 18 26 26 H 1.08998 * 109.46867 * 60.00428 * 1 2 3 27 27 H 1.08990 * 109.47394 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46931 * 300.00618 * 1 2 3 29 29 H 1.08997 * 109.46931 * 239.99382 * 2 1 3 30 30 H 1.08998 * 109.46400 * 119.99827 * 2 1 3 31 31 H 1.08998 * 109.47250 * 59.99544 * 3 2 1 32 32 H 1.08998 * 109.46868 * 299.99571 * 3 2 1 33 33 H 0.96999 * 120.00718 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.47066 * 300.00325 * 17 15 4 35 35 H 1.09001 * 109.46730 * 60.00562 * 17 15 4 36 36 H 1.09002 * 109.46855 * 180.02562 * 17 15 4 37 37 H 1.07999 * 119.97365 * 359.97438 * 19 18 15 38 38 H 1.08001 * 119.93992 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.97612 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.03535 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47067 * 179.97438 * 25 24 23 42 42 H 1.08990 * 109.47230 * 300.00666 * 25 24 23 43 43 H 1.09007 * 109.46459 * 60.00799 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1794 1.3398 -1.1618 6 8 5.3964 1.3394 -1.1612 7 6 3.4482 1.2289 -2.4248 8 1 2.3713 1.3117 -2.4345 9 6 4.1447 1.0154 -3.6209 10 7 5.4514 1.0164 -3.6251 11 14 3.2059 0.7294 -5.2102 12 1 3.0607 2.0157 -5.9378 13 1 3.9497 -0.2373 -6.0574 14 1 1.8609 0.1821 -4.8991 15 6 4.2370 1.5540 1.2648 16 1 4.9427 0.7276 1.3501 17 6 3.2492 1.5037 2.4322 18 6 4.9871 2.8606 1.2974 19 6 4.5302 3.9386 0.5638 20 6 5.2176 5.1377 0.5937 21 6 6.3634 5.2616 1.3579 22 6 6.8243 4.1870 2.0930 23 6 6.1337 2.9837 2.0682 24 8 6.5818 1.9266 2.7953 25 6 7.7691 2.1255 3.5653 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8900 33 1 5.9339 0.8689 -4.4535 34 1 2.5436 2.3300 2.3468 35 1 2.7068 0.5586 2.4086 36 1 3.7938 1.5871 3.3727 37 1 3.6353 3.8445 -0.0334 38 1 4.8590 5.9790 0.0193 39 1 6.8989 6.1993 1.3793 40 1 7.7195 4.2840 2.6893 41 1 8.0159 1.2061 4.0964 42 1 8.5913 2.3945 2.9024 43 1 7.6052 2.9275 4.2851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274671474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:45 Heat of formation + Delta-G solvation = -47.244741 kcal Electronic energy + Delta-G solvation = -24488.108034 eV Core-core repulsion = 21112.903388 eV Total energy + Delta-G solvation = -3375.204646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94394 -38.16503 -36.70973 -34.95304 -33.32976 -32.28765 -30.58548 -29.69084 -28.84632 -26.97372 -26.07585 -25.53271 -22.84782 -21.64317 -21.00718 -20.86296 -18.65775 -17.54608 -16.42266 -16.01213 -15.75923 -15.42784 -15.14527 -14.67856 -14.15444 -14.05166 -13.90969 -13.55871 -13.08190 -12.95424 -12.56200 -12.29200 -12.15765 -11.92829 -11.85283 -11.58858 -11.39961 -11.32821 -11.08259 -11.01308 -10.89245 -10.74026 -10.59353 -10.50738 -10.24839 -10.21793 -10.02494 -9.81615 -8.78744 -8.28566 -7.68483 -7.39366 -7.13639 -6.11861 -4.55486 1.89163 1.97705 3.15854 3.23723 3.26850 3.65593 4.11814 4.28124 4.59124 4.64268 5.12931 5.25970 5.29823 5.35743 5.54457 5.55773 5.58091 5.59538 5.68866 5.71652 5.82599 5.89117 5.93554 5.96023 5.99286 6.14915 6.25400 6.34912 6.36253 6.42795 6.47223 6.58253 6.64740 6.78729 6.82625 6.96388 7.02592 7.17457 7.32157 7.51493 7.74260 7.84452 8.23278 8.45035 9.09925 9.54053 10.66621 10.87198 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.006104 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.350027 B = 4585.732713 C = 5537.540549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.125 3.875 4 N -0.639 5.639 5 C 0.559 3.441 6 O -0.566 6.566 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.900 3.100 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.264 1.264 15 C 0.201 3.799 16 H 0.073 0.927 17 C -0.148 4.148 18 C -0.089 4.089 19 C -0.055 4.055 20 C -0.158 4.158 21 C -0.096 4.096 22 C -0.214 4.214 23 C 0.128 3.872 24 O -0.313 6.313 25 C 0.030 3.970 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.266 0.734 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 3.909 11.710 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.000 4.000 4 N -0.377 5.377 5 C 0.365 3.635 6 O -0.448 6.448 7 C -0.578 4.578 8 H 0.089 0.911 9 C -0.131 4.131 10 N -0.396 5.396 11 Si 0.725 3.275 12 H -0.200 1.200 13 H -0.205 1.205 14 H -0.188 1.188 15 C 0.096 3.904 16 H 0.091 0.909 17 C -0.205 4.205 18 C -0.091 4.091 19 C -0.073 4.073 20 C -0.176 4.176 21 C -0.114 4.114 22 C -0.233 4.233 23 C 0.083 3.917 24 O -0.226 6.226 25 C -0.065 4.065 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.554 3.687 11.617 12.453 hybrid contribution -0.135 0.026 -0.877 0.888 sum -2.690 3.713 10.740 11.678 Atomic orbital electron populations 1.21698 0.96700 1.00844 1.01153 1.22011 0.94433 0.99148 1.02558 1.21278 0.82188 0.95435 1.01089 1.48292 1.04556 1.79456 1.05418 1.18180 0.86964 0.76354 0.82034 1.90629 1.13966 1.54243 1.85925 1.20984 0.93916 1.52677 0.90224 0.91089 1.25700 0.94508 0.93039 0.99854 1.70034 1.07090 1.35313 1.27146 0.86482 0.80433 0.78575 0.82039 1.19952 1.20549 1.18826 1.19250 0.92777 0.93198 0.85155 0.90867 1.22055 0.99092 1.01824 0.97534 1.19682 0.94678 0.97299 0.97430 1.20838 0.99538 0.91241 0.95685 1.20970 0.97043 0.98152 1.01418 1.20736 0.96322 0.97681 0.96687 1.21023 1.02217 0.93844 1.06180 1.18756 0.93610 0.86212 0.93156 1.86078 1.42348 1.35637 1.58586 1.22951 0.86398 1.02625 0.94536 0.92817 0.93434 0.93478 0.90703 0.92899 0.92488 0.90987 0.92327 0.92364 0.91971 0.92239 0.85418 0.86612 0.86701 0.86291 0.88763 0.92972 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.40 6.10 -26.73 -0.16 -2.57 16 3 C 0.12 2.27 4.39 -4.04 -0.02 2.25 16 4 N -0.64 -14.26 1.59 -169.08 -0.27 -14.53 16 5 C 0.56 15.60 6.71 -12.99 -0.09 15.51 16 6 O -0.57 -18.26 14.43 5.20 0.07 -18.18 16 7 C -0.54 -14.92 8.30 -35.64 -0.30 -15.22 16 8 H 0.07 1.80 6.06 -52.48 -0.32 1.48 16 9 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 10 N -0.77 -23.08 11.85 55.55 0.66 -22.42 16 11 Si 0.90 20.19 29.56 -169.99 -5.03 15.16 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 15 C 0.20 4.13 2.53 -69.08 -0.17 3.95 16 16 H 0.07 1.71 7.63 -51.93 -0.40 1.32 16 17 C -0.15 -2.33 8.00 37.16 0.30 -2.04 16 18 C -0.09 -1.83 4.18 -104.48 -0.44 -2.27 16 19 C -0.05 -1.11 8.85 -39.60 -0.35 -1.46 16 20 C -0.16 -2.81 10.04 -39.56 -0.40 -3.21 16 21 C -0.10 -1.57 10.04 -39.61 -0.40 -1.97 16 22 C -0.21 -3.59 9.04 -39.43 -0.36 -3.94 16 23 C 0.13 2.44 6.66 -39.21 -0.26 2.18 16 24 O -0.31 -5.52 9.61 -19.43 -0.19 -5.70 16 25 C 0.03 0.37 9.81 101.05 0.99 1.37 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.48 7.71 -51.93 -0.40 1.08 16 30 H 0.05 0.86 6.86 -51.93 -0.36 0.51 16 31 H 0.06 0.89 5.61 -51.93 -0.29 0.60 16 32 H 0.07 1.38 6.33 -51.93 -0.33 1.05 16 33 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 34 H 0.06 0.86 6.66 -51.93 -0.35 0.51 16 35 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.13 2.65 7.19 -52.49 -0.38 2.28 16 38 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 1.63 6.30 -52.49 -0.33 1.30 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 43 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -34.53 345.77 -7.29 -41.82 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.37 Total: 5.29 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.38 Total: -6.64 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.39 Total: -36.95 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.11 Total: -23.88 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.53 -7.29 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274671474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.427 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds