Wall clock time and date at job start Tue Mar 31 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47185 * 2 1 4 4 N 1.46499 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00036 * 84.96339 * 4 3 2 6 6 O 1.21692 * 119.99708 * 180.02562 * 5 4 3 7 7 C 1.46368 * 120.00063 * 0.02562 * 5 4 3 8 8 H 1.08007 * 120.00205 * 5.08273 * 7 5 4 9 9 C 1.40045 * 120.00225 * 185.08361 * 7 5 4 10 10 N 1.30672 * 120.00128 * 354.81069 * 9 7 5 11 11 Si 1.86795 * 120.00404 * 174.81456 * 9 7 5 12 12 H 1.48498 * 109.47395 * 94.99384 * 11 9 7 13 13 H 1.48504 * 109.47299 * 214.99638 * 11 9 7 14 14 H 1.48506 * 109.47093 * 334.99249 * 11 9 7 15 15 C 1.46504 * 119.99895 * 264.96806 * 4 3 2 16 16 H 1.09000 * 109.47063 * 126.07595 * 15 4 3 17 17 C 1.53002 * 109.47019 * 6.07356 * 15 4 3 18 18 C 1.50697 * 109.47056 * 246.07614 * 15 4 3 19 19 C 1.38167 * 120.02806 * 26.45741 * 18 15 4 20 20 C 1.38244 * 120.05424 * 179.97438 * 19 18 15 21 21 C 1.38281 * 120.11416 * 359.97438 * 20 19 18 22 22 C 1.38121 * 120.05700 * 0.02562 * 21 20 19 23 23 C 1.38708 * 120.02815 * 206.18850 * 18 15 4 24 24 O 1.35902 * 120.05727 * 359.97438 * 23 18 15 25 25 C 1.42900 * 117.00279 * 179.97438 * 24 23 18 26 26 H 1.08998 * 109.46867 * 60.00428 * 1 2 3 27 27 H 1.08990 * 109.47394 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46931 * 300.00618 * 1 2 3 29 29 H 1.08997 * 109.46931 * 239.99382 * 2 1 3 30 30 H 1.08998 * 109.46400 * 119.99827 * 2 1 3 31 31 H 1.08998 * 109.47250 * 59.99544 * 3 2 1 32 32 H 1.08998 * 109.46868 * 299.99571 * 3 2 1 33 33 H 0.96999 * 120.00718 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.47066 * 300.00325 * 17 15 4 35 35 H 1.09001 * 109.46730 * 60.00562 * 17 15 4 36 36 H 1.09002 * 109.46855 * 180.02562 * 17 15 4 37 37 H 1.07999 * 119.97365 * 359.97438 * 19 18 15 38 38 H 1.08001 * 119.93992 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.97612 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.03535 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47067 * 179.97438 * 25 24 23 42 42 H 1.08990 * 109.47230 * 300.00666 * 25 24 23 43 43 H 1.09007 * 109.46459 * 60.00799 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1794 1.3398 -1.1618 6 8 5.3964 1.3394 -1.1612 7 6 3.4482 1.2289 -2.4248 8 1 2.3713 1.3117 -2.4345 9 6 4.1447 1.0154 -3.6209 10 7 5.4514 1.0164 -3.6251 11 14 3.2059 0.7294 -5.2102 12 1 3.0607 2.0157 -5.9378 13 1 3.9497 -0.2373 -6.0574 14 1 1.8609 0.1821 -4.8991 15 6 4.2370 1.5540 1.2648 16 1 4.9427 0.7276 1.3501 17 6 3.2492 1.5037 2.4322 18 6 4.9871 2.8606 1.2974 19 6 4.5302 3.9386 0.5638 20 6 5.2176 5.1377 0.5937 21 6 6.3634 5.2616 1.3579 22 6 6.8243 4.1870 2.0930 23 6 6.1337 2.9837 2.0682 24 8 6.5818 1.9266 2.7953 25 6 7.7691 2.1255 3.5653 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8900 33 1 5.9339 0.8689 -4.4535 34 1 2.5436 2.3300 2.3468 35 1 2.7068 0.5586 2.4086 36 1 3.7938 1.5871 3.3727 37 1 3.6353 3.8445 -0.0334 38 1 4.8590 5.9790 0.0193 39 1 6.8989 6.1993 1.3793 40 1 7.7195 4.2840 2.6893 41 1 8.0159 1.2061 4.0964 42 1 8.5913 2.3945 2.9024 43 1 7.6052 2.9275 4.2851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274671474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:44 Heat of formation + Delta-G solvation = -68.459586 kcal Electronic energy + Delta-G solvation = -24489.027979 eV Core-core repulsion = 21112.903388 eV Total energy + Delta-G solvation = -3376.124591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35597 -39.84810 -38.11874 -36.84857 -34.88992 -34.26985 -32.14674 -31.06344 -30.25964 -28.16503 -28.03406 -26.97959 -24.30390 -23.06816 -22.58099 -22.35959 -20.36778 -18.91677 -18.31513 -17.75170 -17.30457 -16.87733 -16.54552 -16.19809 -15.84685 -15.50276 -15.27921 -15.02480 -14.47648 -14.33170 -14.28279 -13.85884 -13.69728 -13.40902 -13.16058 -13.00989 -12.88141 -12.76047 -12.73311 -12.60718 -12.34584 -12.13909 -12.03402 -11.95769 -11.95093 -11.84809 -11.56212 -11.29177 -10.87647 -9.80149 -9.56874 -9.05011 -8.93443 -8.21755 -6.74123 0.48866 0.57580 1.38283 1.39586 1.54537 2.24859 2.46323 2.54363 2.79731 2.97968 3.66622 3.90921 3.99773 4.17347 4.20230 4.25243 4.28892 4.37703 4.40021 4.41764 4.49326 4.56925 4.64901 4.69244 4.70552 4.84758 4.85808 4.93540 5.06436 5.09532 5.19236 5.21709 5.29702 5.38682 5.41470 5.46195 5.55435 5.63150 5.72086 5.89172 5.95745 6.23865 6.52931 6.56564 6.95398 7.56093 8.58734 8.78144 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.006104 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.350027 B = 4585.732713 C = 5537.540549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.122 3.878 4 N -0.636 5.636 5 C 0.549 3.451 6 O -0.622 6.622 7 C -0.561 4.561 8 H 0.088 0.912 9 C 0.030 3.970 10 N -0.823 5.823 11 Si 0.985 3.015 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.247 1.247 15 C 0.201 3.799 16 H 0.032 0.968 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.079 4.079 20 C -0.169 4.169 21 C -0.092 4.092 22 C -0.213 4.213 23 C 0.112 3.888 24 O -0.337 6.337 25 C 0.020 3.980 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.117 0.883 42 H 0.052 0.948 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 4.862 12.696 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C -0.001 4.001 4 N -0.371 5.371 5 C 0.355 3.645 6 O -0.508 6.508 7 C -0.598 4.598 8 H 0.106 0.894 9 C -0.184 4.184 10 N -0.453 5.453 11 Si 0.805 3.195 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.170 1.170 15 C 0.096 3.904 16 H 0.050 0.950 17 C -0.190 4.190 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.187 4.187 21 C -0.110 4.110 22 C -0.232 4.232 23 C 0.067 3.933 24 O -0.251 6.251 25 C -0.074 4.074 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.135 0.865 42 H 0.071 0.929 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.085 4.642 12.656 14.086 hybrid contribution 0.403 -0.256 -1.056 1.159 sum -3.682 4.387 11.600 12.937 Atomic orbital electron populations 1.21634 0.93429 1.02127 1.02352 1.21912 0.97197 0.97446 1.00985 1.21505 0.79681 0.96820 1.02125 1.48071 1.06239 1.77958 1.04850 1.18463 0.86470 0.75781 0.83831 1.90571 1.16307 1.56664 1.87273 1.21444 0.94834 1.52668 0.90819 0.89406 1.26887 0.95363 0.91973 1.04190 1.70223 1.09526 1.37032 1.28521 0.85193 0.79203 0.78823 0.76289 1.18824 1.20190 1.17032 1.19280 0.93133 0.92229 0.85728 0.95037 1.21958 0.98324 1.02919 0.95843 1.19776 0.96146 0.97185 0.98989 1.20835 0.99934 0.92612 0.96360 1.21275 0.97571 0.97873 1.01947 1.21199 0.95535 0.99093 0.95154 1.21446 1.02800 0.92913 1.06028 1.18964 0.93527 0.87446 0.93409 1.86045 1.44296 1.35789 1.58959 1.23300 0.84592 1.04932 0.94573 0.92786 0.92155 0.91103 0.94298 0.92513 0.89239 0.92040 0.92088 0.90863 0.90896 0.91028 0.87205 0.84647 0.82834 0.83017 0.86525 0.92907 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.91 71.98 0.71 -2.65 16 2 C -0.14 -4.53 6.10 30.59 0.19 -4.35 16 3 C 0.12 4.42 4.39 86.38 0.38 4.80 16 4 N -0.64 -29.45 1.59 -807.07 -1.28 -30.74 16 5 C 0.55 32.23 6.71 86.36 0.58 32.81 16 6 O -0.62 -42.66 14.43 -4.32 -0.06 -42.73 16 7 C -0.56 -31.97 8.30 24.83 0.21 -31.77 16 8 H 0.09 4.53 6.06 -2.91 -0.02 4.51 16 9 C 0.03 1.73 5.50 85.30 0.47 2.19 16 10 N -0.82 -51.71 11.85 21.83 0.26 -51.45 16 11 Si 0.98 42.06 29.56 68.60 2.03 44.08 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 13 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 15 C 0.20 8.58 2.53 44.24 0.11 8.69 16 16 H 0.03 1.58 7.63 -2.39 -0.02 1.57 16 17 C -0.13 -4.13 8.00 71.98 0.58 -3.55 16 18 C -0.12 -5.07 4.18 -19.77 -0.08 -5.16 16 19 C -0.08 -3.30 8.85 22.25 0.20 -3.10 16 20 C -0.17 -5.95 10.04 22.28 0.22 -5.73 16 21 C -0.09 -2.83 10.04 22.25 0.22 -2.61 16 22 C -0.21 -6.83 9.04 22.37 0.20 -6.63 16 23 C 0.11 4.31 6.66 22.51 0.15 4.46 16 24 O -0.34 -11.96 9.61 -92.45 -0.89 -12.85 16 25 C 0.02 0.47 9.81 113.37 1.11 1.58 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.56 7.71 -2.39 -0.02 1.54 16 30 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 31 H 0.09 2.66 5.61 -2.39 -0.01 2.65 16 32 H 0.06 2.36 6.33 -2.39 -0.02 2.34 16 33 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 34 H 0.07 2.03 6.66 -2.39 -0.02 2.02 16 35 H 0.07 2.06 6.57 -2.39 -0.02 2.05 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.11 4.80 7.19 -2.91 -0.02 4.78 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.15 3.72 6.30 -2.91 -0.02 3.70 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.21 7.65 -2.39 -0.02 1.19 16 43 H 0.07 1.34 7.67 -2.38 -0.02 1.32 16 Total: -1.00 -81.10 345.77 6.30 -74.80 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 1.00 Total: 29.89 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.25 Total: -11.01 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.03 Total: -82.19 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.95 Total: -55.57 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -81.10 6.30 -74.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274671474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.344 kcal (2) G-P(sol) polarization free energy of solvation -81.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds