Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46754 * 2 1 4 4 N 1.46506 * 109.46844 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99659 * 274.08935 * 4 3 2 6 6 O 1.21688 * 119.99612 * 180.02562 * 5 4 3 7 7 C 1.46377 * 120.00527 * 0.02562 * 5 4 3 8 8 H 1.08001 * 119.99768 * 359.97438 * 7 5 4 9 9 C 1.40047 * 120.00112 * 180.02562 * 7 5 4 10 10 N 1.30674 * 120.00074 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99918 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47358 * 359.97438 * 11 9 7 13 13 H 1.48508 * 109.47166 * 119.99650 * 11 9 7 14 14 H 1.48502 * 109.46886 * 239.99158 * 11 9 7 15 15 C 1.46498 * 120.00015 * 94.08843 * 4 3 2 16 16 H 1.08997 * 109.47139 * 234.32355 * 15 4 3 17 17 C 1.53003 * 109.46838 * 354.32196 * 15 4 3 18 18 C 1.50696 * 109.47236 * 114.32050 * 15 4 3 19 19 C 1.38176 * 120.02599 * 335.05536 * 18 15 4 20 20 C 1.38242 * 120.05467 * 179.77004 * 19 18 15 21 21 C 1.38294 * 120.10818 * 0.50553 * 20 19 18 22 22 C 1.38118 * 120.05980 * 359.74463 * 21 20 19 23 23 C 1.38702 * 120.03089 * 155.32948 * 18 15 4 24 24 O 1.35905 * 120.05344 * 359.97438 * 23 18 15 25 25 C 1.42902 * 116.99858 * 179.97438 * 24 23 18 26 26 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47310 * 300.00059 * 1 2 3 28 28 H 1.08997 * 109.46736 * 60.00365 * 1 2 3 29 29 H 1.08998 * 109.47310 * 239.99941 * 2 1 3 30 30 H 1.08997 * 109.46736 * 119.99635 * 2 1 3 31 31 H 1.08989 * 109.47304 * 299.99681 * 3 2 1 32 32 H 1.09006 * 109.47063 * 60.00132 * 3 2 1 33 33 H 0.96998 * 119.99866 * 180.02562 * 10 9 7 34 34 H 1.08991 * 109.47371 * 59.99781 * 17 15 4 35 35 H 1.09000 * 109.47005 * 180.02562 * 17 15 4 36 36 H 1.09006 * 109.47034 * 299.99745 * 17 15 4 37 37 H 1.08003 * 119.97033 * 0.02562 * 19 18 15 38 38 H 1.07994 * 119.94577 * 180.25264 * 20 19 18 39 39 H 1.07997 * 119.96896 * 179.76736 * 21 20 19 40 40 H 1.07997 * 120.03382 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.46866 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47247 * 300.00355 * 25 24 23 43 43 H 1.08999 * 109.47284 * 60.00223 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.3595 1.1652 6 8 5.3952 1.3600 1.1657 7 6 3.4460 1.2687 2.4293 8 1 2.3660 1.2687 2.4288 9 6 4.1457 1.1830 3.6394 10 7 5.4525 1.1835 3.6400 11 14 3.2110 1.0679 5.2526 12 1 1.7512 1.0871 4.9814 13 1 3.5699 -0.1968 5.9435 14 1 3.5691 2.2221 6.1156 15 6 4.2381 1.5329 -1.2646 16 1 4.9388 0.7013 -1.3386 17 6 3.2504 1.4730 -2.4316 18 6 4.9960 2.8344 -1.3143 19 6 4.5628 3.9156 -0.5708 20 6 5.2604 5.1084 -0.6122 21 6 6.3870 5.2260 -1.4056 22 6 6.8211 4.1498 -2.1546 23 6 6.1256 2.9499 -2.1107 24 8 6.5507 1.8895 -2.8468 25 6 7.7210 2.0808 -3.6443 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 5.9371 1.1237 4.4781 34 1 2.5496 2.3044 -2.3575 35 1 3.7958 1.5397 -3.3729 36 1 2.7022 0.5315 -2.3956 37 1 3.6810 3.8273 0.0465 38 1 4.9226 5.9510 -0.0272 39 1 6.9280 6.1600 -1.4392 40 1 7.7012 4.2420 -2.7737 41 1 7.9502 1.1596 -4.1799 42 1 7.5452 2.8831 -4.3608 43 1 8.5599 2.3457 -3.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274671477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -47.135701 kcal Electronic energy + Delta-G solvation = -24493.967879 eV Core-core repulsion = 21118.767961 eV Total energy + Delta-G solvation = -3375.199918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94450 -38.17025 -36.70284 -34.95892 -33.32731 -32.28631 -30.58958 -29.68814 -28.84109 -26.97761 -26.07664 -25.53042 -22.84398 -21.63522 -21.01330 -20.86297 -18.65730 -17.54845 -16.42379 -16.01504 -15.75827 -15.43190 -15.14725 -14.67621 -14.15459 -14.04402 -13.90740 -13.56273 -13.08022 -12.95620 -12.55809 -12.29116 -12.16409 -11.92718 -11.85123 -11.58765 -11.40673 -11.31653 -11.08450 -11.01835 -10.88234 -10.73556 -10.60563 -10.52179 -10.23403 -10.21799 -10.00403 -9.82487 -8.80166 -8.27647 -7.68056 -7.39463 -7.13719 -6.11547 -4.56196 1.89834 1.98233 3.15054 3.23708 3.27304 3.65417 4.11676 4.28941 4.58772 4.63888 5.13000 5.26356 5.29664 5.35572 5.54711 5.55416 5.57312 5.59403 5.69206 5.71762 5.82845 5.89406 5.93750 5.96021 5.99585 6.15106 6.26505 6.34778 6.35978 6.43220 6.46874 6.58599 6.65084 6.78297 6.82722 6.96830 7.01366 7.18175 7.32844 7.51229 7.74210 7.84513 8.23203 8.45001 9.09763 9.53890 10.66549 10.87193 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.006166 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.009140 B = 4539.578599 C = 5544.051544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.124 3.876 4 N -0.640 5.640 5 C 0.559 3.441 6 O -0.566 6.566 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.900 3.100 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.201 3.799 16 H 0.073 0.927 17 C -0.148 4.148 18 C -0.089 4.089 19 C -0.054 4.054 20 C -0.157 4.157 21 C -0.096 4.096 22 C -0.214 4.214 23 C 0.127 3.873 24 O -0.313 6.313 25 C 0.030 3.970 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.265 0.735 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 3.706 -11.783 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.000 4.000 4 N -0.377 5.377 5 C 0.364 3.636 6 O -0.447 6.447 7 C -0.578 4.578 8 H 0.090 0.910 9 C -0.131 4.131 10 N -0.396 5.396 11 Si 0.725 3.275 12 H -0.188 1.188 13 H -0.203 1.203 14 H -0.203 1.203 15 C 0.097 3.903 16 H 0.091 0.909 17 C -0.205 4.205 18 C -0.091 4.091 19 C -0.072 4.072 20 C -0.175 4.175 21 C -0.114 4.114 22 C -0.233 4.233 23 C 0.082 3.918 24 O -0.227 6.227 25 C -0.065 4.065 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.586 3.498 -11.687 12.470 hybrid contribution -0.123 0.112 0.880 0.896 sum -2.709 3.611 -10.807 11.712 Atomic orbital electron populations 1.21700 0.96675 1.00847 1.01184 1.22020 0.94468 0.99168 1.02506 1.21286 0.82187 0.95399 1.01179 1.48293 1.04559 1.79664 1.05224 1.18193 0.86991 0.76407 0.82016 1.90630 1.13952 1.54205 1.85928 1.21032 0.93618 1.53619 0.89493 0.91027 1.25710 0.94523 0.92831 1.00080 1.70042 1.06979 1.35633 1.26913 0.86431 0.80620 0.78158 0.82261 1.18756 1.20297 1.20309 1.19241 0.92692 0.93282 0.85125 0.90921 1.22056 0.99093 1.01812 0.97551 1.19675 0.94927 0.97297 0.97180 1.20853 0.99433 0.91218 0.95690 1.20974 0.97152 0.98247 1.01175 1.20738 0.96524 0.97669 0.96512 1.21016 1.02432 0.93883 1.05952 1.18753 0.93835 0.86181 0.93055 1.86078 1.43820 1.35627 1.57152 1.22948 0.86844 1.02644 0.94074 0.93430 0.92807 0.93451 0.92868 0.90803 0.92514 0.90849 0.92374 0.92374 0.92219 0.91976 0.85358 0.86620 0.86713 0.86302 0.88770 0.93244 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.14 -2.39 6.08 -26.73 -0.16 -2.56 16 3 C 0.12 2.26 4.39 -4.04 -0.02 2.24 16 4 N -0.64 -14.25 1.59 -169.08 -0.27 -14.52 16 5 C 0.56 15.55 6.60 -12.99 -0.09 15.46 16 6 O -0.57 -18.21 14.38 5.20 0.07 -18.14 16 7 C -0.54 -14.89 8.38 -35.63 -0.30 -15.19 16 8 H 0.07 1.81 6.06 -52.49 -0.32 1.50 16 9 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 10 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 11 Si 0.90 20.17 29.56 -169.99 -5.02 15.15 16 12 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.20 4.14 2.52 -69.08 -0.17 3.96 16 16 H 0.07 1.70 7.69 -51.93 -0.40 1.30 16 17 C -0.15 -2.34 8.01 37.16 0.30 -2.04 16 18 C -0.09 -1.84 4.18 -104.48 -0.44 -2.27 16 19 C -0.05 -1.10 8.80 -39.60 -0.35 -1.44 16 20 C -0.16 -2.83 10.04 -39.56 -0.40 -3.22 16 21 C -0.10 -1.58 10.04 -39.60 -0.40 -1.98 16 22 C -0.21 -3.59 9.04 -39.43 -0.36 -3.95 16 23 C 0.13 2.42 6.66 -39.22 -0.26 2.16 16 24 O -0.31 -5.49 9.64 -19.44 -0.19 -5.68 16 25 C 0.03 0.37 9.81 101.05 0.99 1.36 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.86 6.78 -51.93 -0.35 0.51 16 30 H 0.07 1.44 7.80 -51.93 -0.41 1.04 16 31 H 0.06 0.89 5.65 -51.94 -0.29 0.60 16 32 H 0.07 1.41 6.33 -51.93 -0.33 1.08 16 33 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 34 H 0.06 0.86 6.67 -51.93 -0.35 0.51 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.92 6.48 -51.93 -0.34 0.58 16 37 H 0.13 2.70 7.10 -52.48 -0.37 2.33 16 38 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.12 1.63 6.30 -52.49 -0.33 1.30 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 43 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -34.46 345.59 -7.29 -41.75 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.37 Total: 5.32 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.37 Total: -6.70 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.39 Total: -36.91 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.11 Total: -23.82 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.46 -7.29 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274671477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.387 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds