Wall clock time and date at job start Tue Mar 31 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46754 * 2 1 4 4 N 1.46506 * 109.46844 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99659 * 274.08935 * 4 3 2 6 6 O 1.21688 * 119.99612 * 180.02562 * 5 4 3 7 7 C 1.46377 * 120.00527 * 0.02562 * 5 4 3 8 8 H 1.08001 * 119.99768 * 359.97438 * 7 5 4 9 9 C 1.40047 * 120.00112 * 180.02562 * 7 5 4 10 10 N 1.30674 * 120.00074 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99918 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47358 * 359.97438 * 11 9 7 13 13 H 1.48508 * 109.47166 * 119.99650 * 11 9 7 14 14 H 1.48502 * 109.46886 * 239.99158 * 11 9 7 15 15 C 1.46498 * 120.00015 * 94.08843 * 4 3 2 16 16 H 1.08997 * 109.47139 * 234.32355 * 15 4 3 17 17 C 1.53003 * 109.46838 * 354.32196 * 15 4 3 18 18 C 1.50696 * 109.47236 * 114.32050 * 15 4 3 19 19 C 1.38176 * 120.02599 * 335.05536 * 18 15 4 20 20 C 1.38242 * 120.05467 * 179.77004 * 19 18 15 21 21 C 1.38294 * 120.10818 * 0.50553 * 20 19 18 22 22 C 1.38118 * 120.05980 * 359.74463 * 21 20 19 23 23 C 1.38702 * 120.03089 * 155.32948 * 18 15 4 24 24 O 1.35905 * 120.05344 * 359.97438 * 23 18 15 25 25 C 1.42902 * 116.99858 * 179.97438 * 24 23 18 26 26 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47310 * 300.00059 * 1 2 3 28 28 H 1.08997 * 109.46736 * 60.00365 * 1 2 3 29 29 H 1.08998 * 109.47310 * 239.99941 * 2 1 3 30 30 H 1.08997 * 109.46736 * 119.99635 * 2 1 3 31 31 H 1.08989 * 109.47304 * 299.99681 * 3 2 1 32 32 H 1.09006 * 109.47063 * 60.00132 * 3 2 1 33 33 H 0.96998 * 119.99866 * 180.02562 * 10 9 7 34 34 H 1.08991 * 109.47371 * 59.99781 * 17 15 4 35 35 H 1.09000 * 109.47005 * 180.02562 * 17 15 4 36 36 H 1.09006 * 109.47034 * 299.99745 * 17 15 4 37 37 H 1.08003 * 119.97033 * 0.02562 * 19 18 15 38 38 H 1.07994 * 119.94577 * 180.25264 * 20 19 18 39 39 H 1.07997 * 119.96896 * 179.76736 * 21 20 19 40 40 H 1.07997 * 120.03382 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.46866 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47247 * 300.00355 * 25 24 23 43 43 H 1.08999 * 109.47284 * 60.00223 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.3595 1.1652 6 8 5.3952 1.3600 1.1657 7 6 3.4460 1.2687 2.4293 8 1 2.3660 1.2687 2.4288 9 6 4.1457 1.1830 3.6394 10 7 5.4525 1.1835 3.6400 11 14 3.2110 1.0679 5.2526 12 1 1.7512 1.0871 4.9814 13 1 3.5699 -0.1968 5.9435 14 1 3.5691 2.2221 6.1156 15 6 4.2381 1.5329 -1.2646 16 1 4.9388 0.7013 -1.3386 17 6 3.2504 1.4730 -2.4316 18 6 4.9960 2.8344 -1.3143 19 6 4.5628 3.9156 -0.5708 20 6 5.2604 5.1084 -0.6122 21 6 6.3870 5.2260 -1.4056 22 6 6.8211 4.1498 -2.1546 23 6 6.1256 2.9499 -2.1107 24 8 6.5507 1.8895 -2.8468 25 6 7.7210 2.0808 -3.6443 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 5.9371 1.1237 4.4781 34 1 2.5496 2.3044 -2.3575 35 1 3.7958 1.5397 -3.3729 36 1 2.7022 0.5315 -2.3956 37 1 3.6810 3.8273 0.0465 38 1 4.9226 5.9510 -0.0272 39 1 6.9280 6.1600 -1.4392 40 1 7.7012 4.2420 -2.7737 41 1 7.9502 1.1596 -4.1799 42 1 7.5452 2.8831 -4.3608 43 1 8.5599 2.3457 -3.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274671477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:47 Heat of formation + Delta-G solvation = -68.292414 kcal Electronic energy + Delta-G solvation = -24494.885303 eV Core-core repulsion = 21118.767961 eV Total energy + Delta-G solvation = -3376.117342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35924 -39.85059 -38.11257 -36.85266 -34.88692 -34.26656 -32.15094 -31.06649 -30.25571 -28.16830 -28.03028 -26.97536 -24.30311 -23.06372 -22.57929 -22.36550 -20.36735 -18.92217 -18.31444 -17.75739 -17.30032 -16.88011 -16.54233 -16.19891 -15.83687 -15.50252 -15.28076 -15.03059 -14.47946 -14.32554 -14.28087 -13.87242 -13.68690 -13.40331 -13.16138 -12.98989 -12.89103 -12.80427 -12.72025 -12.59292 -12.34222 -12.15080 -12.01169 -11.95443 -11.94757 -11.83514 -11.56331 -11.29653 -10.89474 -9.79823 -9.56531 -9.05009 -8.93372 -8.21217 -6.74686 0.48995 0.57535 1.38400 1.38722 1.55496 2.24834 2.46255 2.54566 2.79996 2.97389 3.67145 3.90845 3.99981 4.17248 4.20047 4.25259 4.29067 4.37781 4.40357 4.41563 4.49309 4.57012 4.64656 4.69343 4.70861 4.84908 4.86113 4.93871 5.06454 5.09418 5.19290 5.21680 5.29641 5.38608 5.40959 5.45708 5.55343 5.62810 5.72312 5.89074 5.95657 6.23904 6.52971 6.56635 6.95449 7.56104 8.58955 8.78406 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.006166 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.009140 B = 4539.578599 C = 5544.051544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.121 3.879 4 N -0.636 5.636 5 C 0.549 3.451 6 O -0.621 6.621 7 C -0.561 4.561 8 H 0.088 0.912 9 C 0.030 3.970 10 N -0.823 5.823 11 Si 0.986 3.014 12 H -0.245 1.245 13 H -0.272 1.272 14 H -0.271 1.271 15 C 0.201 3.799 16 H 0.032 0.968 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.078 4.078 20 C -0.169 4.169 21 C -0.092 4.092 22 C -0.213 4.213 23 C 0.112 3.888 24 O -0.336 6.336 25 C 0.020 3.980 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.269 0.731 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 4.677 -12.831 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C -0.002 4.002 4 N -0.371 5.371 5 C 0.354 3.646 6 O -0.507 6.507 7 C -0.597 4.597 8 H 0.106 0.894 9 C -0.184 4.184 10 N -0.453 5.453 11 Si 0.806 3.194 12 H -0.168 1.168 13 H -0.197 1.197 14 H -0.196 1.196 15 C 0.097 3.903 16 H 0.050 0.950 17 C -0.190 4.190 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.187 4.187 21 C -0.110 4.110 22 C -0.232 4.232 23 C 0.067 3.933 24 O -0.250 6.250 25 C -0.074 4.074 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.135 0.865 42 H 0.092 0.908 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.069 4.469 -12.789 14.145 hybrid contribution 0.401 -0.189 1.076 1.163 sum -3.668 4.280 -11.713 12.999 Atomic orbital electron populations 1.21637 0.93421 1.02145 1.02348 1.21921 0.97213 0.97413 1.00989 1.21509 0.79692 0.96827 1.02155 1.48072 1.06238 1.78172 1.04661 1.18472 0.86499 0.75824 0.83804 1.90572 1.16279 1.56612 1.87272 1.21487 0.94531 1.53601 0.90108 0.89381 1.26891 0.95365 0.91630 1.04559 1.70230 1.09407 1.37345 1.28296 0.85145 0.79709 0.78278 0.76288 1.16786 1.19749 1.19607 1.19273 0.93069 0.92284 0.85701 0.95043 1.21957 0.98316 1.02903 0.95861 1.19768 0.96421 0.97170 0.98717 1.20833 0.99856 0.92641 0.96341 1.21272 0.97689 0.97957 1.01809 1.21198 0.95692 0.99092 0.94993 1.21442 1.02930 0.92928 1.05850 1.18950 0.93709 0.87423 0.93252 1.86046 1.45734 1.35709 1.57553 1.23302 0.85098 1.04972 0.94041 0.92108 0.92808 0.91114 0.92440 0.94328 0.89317 0.91973 0.92103 0.90924 0.91012 0.90870 0.87324 0.84764 0.82844 0.82963 0.86496 0.90796 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.14 -4.51 6.08 30.60 0.19 -4.32 16 3 C 0.12 4.41 4.39 86.38 0.38 4.79 16 4 N -0.64 -29.47 1.59 -807.06 -1.29 -30.75 16 5 C 0.55 32.17 6.60 86.36 0.57 32.74 16 6 O -0.62 -42.55 14.38 -4.31 -0.06 -42.61 16 7 C -0.56 -31.93 8.38 24.83 0.21 -31.72 16 8 H 0.09 4.54 6.06 -2.91 -0.02 4.53 16 9 C 0.03 1.70 5.50 85.30 0.47 2.17 16 10 N -0.82 -51.63 11.83 21.84 0.26 -51.37 16 11 Si 0.99 42.05 29.56 68.60 2.03 44.07 16 12 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 15 C 0.20 8.60 2.52 44.25 0.11 8.71 16 16 H 0.03 1.58 7.69 -2.39 -0.02 1.56 16 17 C -0.13 -4.13 8.01 71.98 0.58 -3.55 16 18 C -0.12 -5.08 4.18 -19.77 -0.08 -5.16 16 19 C -0.08 -3.30 8.80 22.26 0.20 -3.11 16 20 C -0.17 -6.04 10.04 22.28 0.22 -5.82 16 21 C -0.09 -2.85 10.04 22.25 0.22 -2.62 16 22 C -0.21 -6.81 9.04 22.37 0.20 -6.61 16 23 C 0.11 4.30 6.66 22.51 0.15 4.45 16 24 O -0.34 -11.84 9.64 -92.48 -0.89 -12.73 16 25 C 0.02 0.46 9.81 113.37 1.11 1.57 16 26 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.83 6.78 -2.39 -0.02 1.81 16 30 H 0.04 1.53 7.80 -2.39 -0.02 1.52 16 31 H 0.09 2.65 5.65 -2.39 -0.01 2.64 16 32 H 0.06 2.40 6.33 -2.38 -0.02 2.38 16 33 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 34 H 0.07 2.03 6.67 -2.39 -0.02 2.01 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.07 6.48 -2.38 -0.02 2.05 16 37 H 0.11 4.84 7.10 -2.91 -0.02 4.82 16 38 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.15 3.71 6.30 -2.91 -0.02 3.69 16 41 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 43 H 0.05 1.20 7.66 -2.39 -0.02 1.18 16 Total: -1.00 -80.95 345.59 6.29 -74.66 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 1.00 Total: 29.86 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 5.24 Total: -11.13 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.03 Total: -82.13 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.95 Total: -55.34 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -80.95 6.29 -74.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274671477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.366 kcal (2) G-P(sol) polarization free energy of solvation -80.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds