Wall clock time and date at job start Tue Mar 31 2020 07:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 O 1.42897 * 109.47097 * 119.99923 * 2 1 3 5 5 C 1.42905 * 114.00213 * 150.00084 * 4 2 1 6 6 C 1.53779 * 113.61356 * 149.99518 * 5 4 2 7 7 C 1.53781 * 87.07867 * 89.11842 * 6 5 4 8 8 N 1.46504 * 113.61416 * 139.97718 * 7 6 5 9 9 C 1.39678 * 119.99824 * 156.52774 * 8 7 6 10 10 C 1.39004 * 120.03795 * 359.97438 * 9 8 7 11 11 C 1.38148 * 120.05687 * 179.97438 * 10 9 8 12 12 C 1.38172 * 120.14824 * 0.04704 * 11 10 9 13 13 C 1.38918 * 120.07741 * 359.96845 * 12 11 10 14 14 O 1.35745 * 120.03251 * 179.97438 * 13 12 11 15 15 C 1.34834 * 116.99917 * 174.48470 * 14 13 12 16 16 H 1.07996 * 120.00172 * 5.04345 * 15 14 13 17 17 C 1.38655 * 119.99896 * 185.05339 * 15 14 13 18 18 N 1.31560 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46992 * 59.99714 * 19 17 15 21 21 H 1.48506 * 109.46892 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47057 * 299.99544 * 19 17 15 23 23 C 1.38750 * 120.03487 * 180.02562 * 9 8 7 24 24 C 1.53780 * 87.17108 * 25.39023 * 7 6 5 25 25 H 1.08998 * 109.47744 * 300.00043 * 1 2 3 26 26 H 1.09003 * 109.47553 * 60.00679 * 1 2 3 27 27 H 1.09007 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47517 * 239.99925 * 2 1 3 29 29 H 1.09006 * 109.47278 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47235 * 299.99643 * 3 2 1 31 31 H 1.08992 * 109.47465 * 59.99855 * 3 2 1 32 32 H 1.09006 * 112.84784 * 18.80409 * 5 4 2 33 33 H 1.08996 * 113.61721 * 334.57067 * 6 5 4 34 34 H 1.08999 * 113.61566 * 203.66680 * 6 5 4 35 35 H 1.09003 * 113.61544 * 270.79760 * 7 6 5 36 36 H 0.97000 * 119.99891 * 336.52936 * 8 7 6 37 37 H 1.07996 * 119.97142 * 359.97438 * 10 9 8 38 38 H 1.08002 * 119.92904 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.96097 * 180.02562 * 12 11 10 40 40 H 0.96994 * 120.00074 * 179.97438 * 18 17 15 41 41 H 1.07991 * 120.07491 * 0.27605 * 23 9 8 42 42 H 1.08997 * 113.61482 * 89.16277 * 24 7 6 43 43 H 1.09001 * 113.61140 * 220.06213 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9887 6 6 4.1074 -1.4000 2.2736 7 6 3.3993 -2.7337 2.5651 8 7 4.2865 -3.7609 3.1166 9 6 3.7563 -4.8091 3.8723 10 6 2.3871 -4.8781 4.1020 11 6 1.8622 -5.9150 4.8489 12 6 2.6957 -6.8857 5.3706 13 6 4.0649 -6.8223 5.1450 14 8 4.8830 -7.7761 5.6584 15 6 6.1838 -7.7202 5.3080 16 1 6.5480 -6.8953 4.7137 17 6 7.0539 -8.7219 5.7106 18 7 6.6103 -9.7267 6.4348 19 14 8.8559 -8.6448 5.2245 20 1 9.4624 -7.4030 5.7679 21 1 9.5682 -9.8255 5.7760 22 1 8.9697 -8.6445 3.7439 23 6 4.5958 -5.7820 4.3954 24 6 3.1783 -2.8603 1.0485 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.8179 -0.9496 0.1267 33 1 3.8753 -0.6159 2.9942 34 1 5.1767 -1.5044 2.0898 35 1 2.4757 -2.6227 3.1332 36 1 5.2420 -3.7130 2.9569 37 1 1.7331 -4.1205 3.6962 38 1 0.7980 -5.9668 5.0257 39 1 2.2820 -7.6952 5.9538 40 1 7.2188 -10.4276 6.7160 41 1 5.6605 -5.7278 4.2229 42 1 3.9931 -3.3647 0.5291 43 1 2.1973 -3.2533 0.7815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275145213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:06 Heat of formation + Delta-G solvation = -27.078923 kcal Electronic energy + Delta-G solvation = -22543.881530 eV Core-core repulsion = 19169.551339 eV Total energy + Delta-G solvation = -3374.330191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99813 -38.85042 -37.40892 -36.19514 -33.51816 -32.21429 -31.95115 -28.99956 -27.94646 -27.57152 -25.82514 -25.18722 -24.12434 -21.85134 -21.60242 -20.74123 -19.63574 -17.88480 -17.30147 -16.94864 -15.98708 -15.38627 -15.29017 -15.08747 -14.75574 -14.35132 -14.03889 -13.78471 -13.54505 -13.14695 -13.12564 -12.79913 -12.73021 -12.59671 -12.47761 -12.23903 -12.02340 -11.84295 -11.58441 -11.47047 -11.08803 -11.03114 -10.76038 -10.70998 -10.51096 -10.42868 -10.29519 -9.66793 -9.32629 -9.29774 -8.70872 -7.30008 -6.70003 -6.36732 -3.95894 2.44450 2.62577 3.16352 3.18187 3.20321 3.28662 3.86171 4.03083 4.39822 4.43856 4.64558 4.68282 4.75240 4.86762 4.92032 4.94393 5.07429 5.20802 5.24904 5.41607 5.44405 5.47835 5.50370 5.56333 5.68231 5.77581 5.83183 5.87477 5.93275 5.95111 6.02405 6.13951 6.34290 6.44480 6.72208 6.72870 7.07233 7.11154 7.20188 7.46004 7.54838 7.73648 8.09088 8.09804 8.28031 9.09309 9.82803 10.81722 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002924 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.484966 B = 9572.453054 C =10452.317744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.175 4.175 4 O -0.359 6.359 5 C 0.066 3.934 6 C -0.150 4.150 7 C 0.147 3.853 8 N -0.743 5.743 9 C 0.248 3.752 10 C -0.278 4.278 11 C -0.040 4.040 12 C -0.237 4.237 13 C 0.189 3.811 14 O -0.179 6.179 15 C -0.388 4.388 16 H 0.090 0.910 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.939 3.061 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.271 1.271 23 C -0.302 4.302 24 C -0.176 4.176 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.394 0.606 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.269 0.731 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 19.208 -13.278 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.279 6.279 5 C 0.007 3.993 6 C -0.188 4.188 7 C 0.040 3.960 8 N -0.373 5.373 9 C 0.147 3.853 10 C -0.301 4.301 11 C -0.059 4.059 12 C -0.258 4.258 13 C 0.135 3.865 14 O -0.082 6.082 15 C -0.465 4.465 16 H 0.107 0.893 17 C -0.166 4.166 18 N -0.501 5.501 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.326 4.326 24 C -0.216 4.216 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.228 0.772 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.457 18.890 -12.867 24.041 hybrid contribution 1.493 0.131 -0.631 1.626 sum -5.964 19.021 -13.497 24.073 Atomic orbital electron populations 1.21867 0.93563 1.02896 1.02453 1.22145 0.95063 0.92319 0.88206 1.22327 1.01525 0.96885 1.02533 1.87936 1.35621 1.69137 1.35157 1.22929 0.85332 0.93050 0.97954 1.23618 0.99322 0.98533 0.97319 1.22198 0.94655 0.86533 0.92634 1.44574 1.08342 1.26023 1.58354 1.17499 0.92194 0.86602 0.88969 1.20123 0.92956 1.04003 1.13008 1.20381 0.97848 0.92846 0.94845 1.20036 0.90913 1.03604 1.11247 1.19074 0.90393 0.87739 0.89335 1.83986 1.19396 1.44089 1.60763 1.21241 0.81248 1.09317 1.34688 0.89296 1.25262 1.00043 0.94729 0.96556 1.70032 1.35889 1.10251 1.33922 0.85813 0.80733 0.78118 0.78905 1.19637 1.20347 1.19637 1.20507 0.99701 0.99722 1.12656 1.24122 1.03065 0.95438 0.98930 0.91738 0.91355 0.91834 0.92170 0.92507 0.91783 0.91737 0.90795 0.90185 0.88857 0.87365 0.77210 0.87712 0.87243 0.86962 0.92112 0.85878 0.89196 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.56 37.15 0.36 -0.71 16 2 C 0.08 0.64 3.22 -26.74 -0.09 0.56 16 3 C -0.18 -1.19 9.53 37.16 0.35 -0.83 16 4 O -0.36 -3.78 9.91 -35.23 -0.35 -4.13 16 5 C 0.07 0.64 4.20 -25.83 -0.11 0.53 16 6 C -0.15 -1.52 7.66 -25.92 -0.20 -1.72 16 7 C 0.15 1.85 3.94 -67.12 -0.26 1.59 16 8 N -0.74 -11.31 5.54 -51.39 -0.28 -11.60 16 9 C 0.25 4.79 6.65 -83.81 -0.56 4.23 16 10 C -0.28 -5.18 9.26 -39.33 -0.36 -5.54 16 11 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 12 C -0.24 -5.33 9.99 -39.35 -0.39 -5.72 16 13 C 0.19 4.78 6.64 -39.13 -0.26 4.52 16 14 O -0.18 -5.28 9.76 0.06 0.00 -5.28 16 15 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 16 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.87 -25.91 13.67 55.48 0.76 -25.16 16 19 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 23 C -0.30 -6.83 9.01 -39.19 -0.35 -7.18 16 24 C -0.18 -1.95 7.72 -25.83 -0.20 -2.15 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.44 7.73 -51.93 -0.40 0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.60 7.77 -51.93 -0.40 0.19 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 35 H 0.11 1.50 6.20 -51.93 -0.32 1.18 16 36 H 0.39 5.49 8.72 -40.82 -0.36 5.13 16 37 H 0.10 1.72 6.07 -52.49 -0.32 1.40 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.12 2.78 5.64 -52.49 -0.30 2.49 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -31.81 355.29 -8.40 -40.21 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.58 Total: 8.19 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.28 Total: -23.47 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.47 Total: -36.75 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.35 Total: -9.41 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.81 -8.40 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275145213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.132 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds