Wall clock time and date at job start Tue Mar 31 2020 07:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 O 1.42897 * 109.47097 * 119.99923 * 2 1 3 5 5 C 1.42905 * 114.00213 * 150.00084 * 4 2 1 6 6 C 1.53779 * 113.61356 * 149.99518 * 5 4 2 7 7 C 1.53781 * 87.07867 * 89.11842 * 6 5 4 8 8 N 1.46504 * 113.61416 * 139.97718 * 7 6 5 9 9 C 1.39678 * 119.99824 * 156.52774 * 8 7 6 10 10 C 1.39004 * 120.03795 * 359.97438 * 9 8 7 11 11 C 1.38148 * 120.05687 * 179.97438 * 10 9 8 12 12 C 1.38172 * 120.14824 * 0.04704 * 11 10 9 13 13 C 1.38918 * 120.07741 * 359.96845 * 12 11 10 14 14 O 1.35745 * 120.03251 * 179.97438 * 13 12 11 15 15 C 1.34834 * 116.99917 * 174.48470 * 14 13 12 16 16 H 1.07996 * 120.00172 * 5.04345 * 15 14 13 17 17 C 1.38655 * 119.99896 * 185.05339 * 15 14 13 18 18 N 1.31560 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46992 * 59.99714 * 19 17 15 21 21 H 1.48506 * 109.46892 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47057 * 299.99544 * 19 17 15 23 23 C 1.38750 * 120.03487 * 180.02562 * 9 8 7 24 24 C 1.53780 * 87.17108 * 25.39023 * 7 6 5 25 25 H 1.08998 * 109.47744 * 300.00043 * 1 2 3 26 26 H 1.09003 * 109.47553 * 60.00679 * 1 2 3 27 27 H 1.09007 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47517 * 239.99925 * 2 1 3 29 29 H 1.09006 * 109.47278 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47235 * 299.99643 * 3 2 1 31 31 H 1.08992 * 109.47465 * 59.99855 * 3 2 1 32 32 H 1.09006 * 112.84784 * 18.80409 * 5 4 2 33 33 H 1.08996 * 113.61721 * 334.57067 * 6 5 4 34 34 H 1.08999 * 113.61566 * 203.66680 * 6 5 4 35 35 H 1.09003 * 113.61544 * 270.79760 * 7 6 5 36 36 H 0.97000 * 119.99891 * 336.52936 * 8 7 6 37 37 H 1.07996 * 119.97142 * 359.97438 * 10 9 8 38 38 H 1.08002 * 119.92904 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.96097 * 180.02562 * 12 11 10 40 40 H 0.96994 * 120.00074 * 179.97438 * 18 17 15 41 41 H 1.07991 * 120.07491 * 0.27605 * 23 9 8 42 42 H 1.08997 * 113.61482 * 89.16277 * 24 7 6 43 43 H 1.09001 * 113.61140 * 220.06213 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9887 6 6 4.1074 -1.4000 2.2736 7 6 3.3993 -2.7337 2.5651 8 7 4.2865 -3.7609 3.1166 9 6 3.7563 -4.8091 3.8723 10 6 2.3871 -4.8781 4.1020 11 6 1.8622 -5.9150 4.8489 12 6 2.6957 -6.8857 5.3706 13 6 4.0649 -6.8223 5.1450 14 8 4.8830 -7.7761 5.6584 15 6 6.1838 -7.7202 5.3080 16 1 6.5480 -6.8953 4.7137 17 6 7.0539 -8.7219 5.7106 18 7 6.6103 -9.7267 6.4348 19 14 8.8559 -8.6448 5.2245 20 1 9.4624 -7.4030 5.7679 21 1 9.5682 -9.8255 5.7760 22 1 8.9697 -8.6445 3.7439 23 6 4.5958 -5.7820 4.3954 24 6 3.1783 -2.8603 1.0485 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.8179 -0.9496 0.1267 33 1 3.8753 -0.6159 2.9942 34 1 5.1767 -1.5044 2.0898 35 1 2.4757 -2.6227 3.1332 36 1 5.2420 -3.7130 2.9569 37 1 1.7331 -4.1205 3.6962 38 1 0.7980 -5.9668 5.0257 39 1 2.2820 -7.6952 5.9538 40 1 7.2188 -10.4276 6.7160 41 1 5.6605 -5.7278 4.2229 42 1 3.9931 -3.3647 0.5291 43 1 2.1973 -3.2533 0.7815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275145213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:05 Heat of formation + Delta-G solvation = -46.794815 kcal Electronic energy + Delta-G solvation = -22544.736475 eV Core-core repulsion = 19169.551339 eV Total energy + Delta-G solvation = -3375.185136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05413 -40.42378 -38.68276 -37.52473 -34.85022 -34.11533 -32.82358 -30.68398 -29.52770 -28.09925 -27.24528 -26.64896 -25.19868 -23.41870 -22.33324 -22.24713 -20.70121 -19.66034 -19.03506 -17.80275 -17.16358 -16.83616 -16.66289 -16.04245 -15.99102 -15.81461 -15.50263 -15.33932 -14.92192 -14.46740 -14.19611 -14.06392 -13.84111 -13.62238 -13.48621 -13.23240 -13.14312 -12.95523 -12.78533 -12.65854 -12.45119 -12.37009 -12.15878 -11.94367 -11.74114 -11.69902 -11.35511 -11.19796 -10.86520 -10.55518 -10.39045 -9.10392 -8.44067 -8.21157 -6.12583 0.76767 0.91847 1.34709 1.46726 1.51557 2.19647 2.58302 2.62173 2.89854 3.25993 3.57674 3.60514 3.65732 3.94421 4.03162 4.07627 4.16601 4.24177 4.32048 4.33867 4.45946 4.61538 4.69042 4.75710 4.77445 4.81189 4.86364 4.93938 4.98202 5.01263 5.08118 5.08377 5.14765 5.17291 5.28903 5.32384 5.35896 5.49055 5.76148 5.81301 6.05235 6.12479 6.40197 6.61977 6.91011 7.00986 7.84249 8.79398 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002924 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.484966 B = 9572.453054 C =10452.317744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 C -0.172 4.172 4 O -0.380 6.380 5 C 0.075 3.925 6 C -0.140 4.140 7 C 0.132 3.868 8 N -0.732 5.732 9 C 0.256 3.744 10 C -0.266 4.266 11 C -0.027 4.027 12 C -0.262 4.262 13 C 0.153 3.847 14 O -0.232 6.232 15 C -0.411 4.411 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.019 2.981 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.315 4.315 24 C -0.172 4.172 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.401 0.599 37 H 0.136 0.864 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.272 0.728 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 22.176 -15.661 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 C -0.229 4.229 4 O -0.299 6.299 5 C 0.017 3.983 6 C -0.178 4.178 7 C 0.027 3.973 8 N -0.360 5.360 9 C 0.152 3.848 10 C -0.289 4.289 11 C -0.045 4.045 12 C -0.283 4.283 13 C 0.101 3.899 14 O -0.138 6.138 15 C -0.487 4.487 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.182 1.182 23 C -0.339 4.339 24 C -0.211 4.211 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.236 0.764 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.593 21.939 -15.295 27.802 hybrid contribution 1.253 -0.543 -0.006 1.366 sum -6.340 21.396 -15.301 27.058 Atomic orbital electron populations 1.21887 0.93162 1.02573 1.03103 1.22356 0.95483 0.92869 0.87729 1.22300 1.01550 0.96132 1.02966 1.87919 1.35978 1.69396 1.36625 1.22865 0.85278 0.91850 0.98333 1.23595 1.00169 0.96505 0.97555 1.22478 0.94351 0.87123 0.93396 1.44711 1.09264 1.25150 1.56911 1.17582 0.92330 0.86578 0.88290 1.20556 0.92999 1.03944 1.11399 1.20808 0.99438 0.91307 0.92983 1.20251 0.90411 1.05044 1.12622 1.19639 0.91282 0.88184 0.90768 1.83949 1.20138 1.46475 1.63269 1.21760 0.81664 1.10127 1.35195 0.88305 1.26611 1.05445 0.93930 0.96227 1.70189 1.38016 1.11627 1.36270 0.84644 0.73658 0.78704 0.79144 1.18166 1.19626 1.18182 1.20516 0.99829 1.00316 1.13261 1.24077 1.02876 0.96924 0.97232 0.92396 0.89445 0.92619 0.91252 0.92418 0.90174 0.92516 0.88607 0.90273 0.87282 0.88285 0.76385 0.84611 0.83220 0.87539 0.91907 0.86655 0.88729 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.56 71.98 0.69 -1.10 16 2 C 0.07 0.96 3.22 30.59 0.10 1.06 16 3 C -0.17 -1.85 9.53 71.98 0.69 -1.17 16 4 O -0.38 -6.96 9.91 -148.98 -1.48 -8.44 16 5 C 0.08 1.21 4.20 31.18 0.13 1.34 16 6 C -0.14 -2.39 7.66 31.12 0.24 -2.16 16 7 C 0.13 2.97 3.94 45.52 0.18 3.15 16 8 N -0.73 -20.68 5.54 -316.51 -1.75 -22.43 16 9 C 0.26 9.54 6.65 38.20 0.25 9.79 16 10 C -0.27 -9.24 9.26 22.43 0.21 -9.03 16 11 C -0.03 -0.98 10.03 22.23 0.22 -0.75 16 12 C -0.26 -12.05 9.99 22.42 0.22 -11.83 16 13 C 0.15 8.06 6.64 22.56 0.15 8.21 16 14 O -0.23 -14.57 9.76 -22.72 -0.22 -14.79 16 15 C -0.41 -24.70 9.49 67.92 0.64 -24.06 16 16 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 17 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 18 N -0.92 -58.01 13.67 21.61 0.30 -57.71 16 19 Si 1.02 43.69 29.55 68.60 2.03 45.71 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.32 -14.51 9.01 22.52 0.20 -14.31 16 24 C -0.17 -3.30 7.72 31.18 0.24 -3.06 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.79 7.73 -2.38 -0.02 0.77 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.16 7.77 -2.38 -0.02 1.14 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 35 H 0.10 2.44 6.20 -2.39 -0.01 2.43 16 36 H 0.40 10.34 8.72 -92.71 -0.81 9.53 16 37 H 0.14 3.92 6.07 -2.91 -0.02 3.91 16 38 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.12 5.36 5.64 -2.92 -0.02 5.35 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.47 355.29 3.70 -69.77 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.20 Total: 32.81 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.63 Total: -44.93 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.46 Total: -80.15 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.70 Total: -23.23 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.47 3.70 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275145213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.974 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds