Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47381 * 2 1 4 4 H 1.09000 * 109.47081 * 305.00109 * 3 2 1 5 5 C 1.50695 * 109.47151 * 184.99772 * 3 2 1 6 6 H 1.07998 * 120.00254 * 239.99645 * 5 3 2 7 7 C 1.37875 * 119.99978 * 60.00008 * 5 3 2 8 8 N 1.31515 * 120.00029 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00257 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46906 * 60.00140 * 9 7 5 11 11 H 1.48500 * 109.47505 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47227 * 300.00434 * 9 7 5 13 13 N 1.46502 * 109.46784 * 64.99963 * 3 2 1 14 14 C 1.34772 * 120.00039 * 275.27137 * 13 3 2 15 15 O 1.21282 * 120.00083 * 359.73495 * 14 13 3 16 16 C 1.50700 * 120.00167 * 179.72751 * 14 13 3 17 17 C 1.53002 * 109.47171 * 294.51792 * 16 14 13 18 18 C 1.52998 * 109.47286 * 54.51651 * 16 14 13 19 19 C 1.50703 * 109.47302 * 174.51872 * 16 14 13 20 20 C 1.38265 * 119.94164 * 294.11905 * 19 16 14 21 21 C 1.38146 * 120.05125 * 179.72565 * 20 19 16 22 22 C 1.38724 * 119.94780 * 0.56570 * 21 20 19 23 23 O 1.35905 * 120.05850 * 179.68263 * 22 21 20 24 24 C 1.38733 * 119.89035 * 359.70646 * 22 21 20 25 25 C 1.38154 * 119.93913 * 359.97438 * 24 22 21 26 26 H 1.09007 * 109.47240 * 300.00091 * 1 2 3 27 27 H 1.08999 * 109.47516 * 59.99947 * 1 2 3 28 28 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46992 * 239.99944 * 2 1 3 30 30 H 1.09004 * 109.46814 * 120.00109 * 2 1 3 31 31 H 0.97005 * 120.00063 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00120 * 95.00531 * 13 3 2 33 33 H 1.08999 * 109.46988 * 59.99740 * 17 16 14 34 34 H 1.08996 * 109.46997 * 180.02562 * 17 16 14 35 35 H 1.09008 * 109.47161 * 299.99965 * 17 16 14 36 36 H 1.09002 * 109.46628 * 60.00085 * 18 16 14 37 37 H 1.08996 * 109.47174 * 179.97438 * 18 16 14 38 38 H 1.08999 * 109.47010 * 300.00344 * 18 16 14 39 39 H 1.07998 * 119.97623 * 359.97438 * 20 19 16 40 40 H 1.08006 * 120.02577 * 180.25237 * 21 20 19 41 41 H 0.96698 * 113.99589 * 270.02560 * 23 22 21 42 42 H 1.07995 * 120.03488 * 179.97438 * 24 22 21 43 43 H 1.07997 * 119.96733 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8810 -1.3817 10 1 6.5974 0.1470 -0.2348 11 1 6.3978 0.2175 -2.6508 12 1 6.4995 2.2813 -1.3820 13 7 1.6524 2.0974 1.2518 14 6 0.4331 2.6596 1.3689 15 8 -0.3415 2.6274 0.4362 16 6 0.0321 3.3279 2.6587 17 6 -0.0528 2.2806 3.7708 18 6 1.0744 4.3841 3.0314 19 6 -1.3119 3.9874 2.4860 20 6 -1.4502 5.0556 1.6190 21 6 -2.6823 5.6582 1.4548 22 6 -3.7789 5.1985 2.1694 23 8 -4.9907 5.7938 2.0144 24 6 -3.6363 4.1302 3.0429 25 6 -2.4034 3.5266 3.1987 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8293 -0.0613 -2.9498 32 1 2.2719 2.1231 1.9978 33 1 0.9192 1.8035 3.8957 34 1 -0.3433 2.7639 4.7036 35 1 -0.7955 1.5281 3.5053 36 1 1.1349 5.1302 2.2390 37 1 0.7842 4.8678 3.9640 38 1 2.0465 3.9070 3.1562 39 1 -0.5951 5.4165 1.0668 40 1 -2.7908 6.4900 0.7744 41 1 -5.1495 6.5272 2.6243 42 1 -4.4883 3.7706 3.6007 43 1 -2.2918 2.6952 3.8789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279478748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -68.221105 kcal Electronic energy + Delta-G solvation = -23961.916330 eV Core-core repulsion = 20585.802080 eV Total energy + Delta-G solvation = -3376.114250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37536 -38.96285 -37.01107 -35.01427 -34.45626 -32.25265 -31.08405 -30.75521 -28.64774 -27.37127 -26.89574 -23.84549 -23.01358 -22.41671 -21.61897 -19.70584 -18.97146 -18.41870 -17.18760 -16.07389 -15.72601 -15.51833 -15.34103 -14.85462 -14.51168 -14.29326 -14.10394 -13.50379 -13.30602 -12.90183 -12.68822 -12.59564 -12.19826 -12.05096 -11.93205 -11.85171 -11.72812 -11.43901 -11.22867 -11.02589 -11.00861 -10.88185 -10.80505 -10.31750 -10.29823 -10.14779 -9.60689 -9.04559 -8.90988 -8.81285 -8.49198 -8.34572 -7.77505 -6.11608 -4.21275 1.30476 1.47024 3.24915 3.30671 3.31306 3.44200 3.65496 4.14438 4.24376 4.41240 4.63428 4.85838 5.02587 5.07491 5.19007 5.21601 5.42824 5.45222 5.58191 5.67765 5.78541 5.80283 5.90578 5.93438 6.08836 6.15308 6.22090 6.41270 6.43690 6.48369 6.49217 6.68805 6.73618 6.88349 7.06060 7.22518 7.39391 7.49375 7.62604 7.63287 7.75429 7.91848 8.19786 8.70394 8.79366 9.18161 9.46511 10.93510 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.003903 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.817749 B = 7173.066081 C = 7294.275339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.706 5.706 14 C 0.511 3.489 15 O -0.539 6.539 16 C -0.049 4.049 17 C -0.141 4.141 18 C -0.137 4.137 19 C -0.052 4.052 20 C -0.074 4.074 21 C -0.144 4.144 22 C 0.094 3.906 23 O -0.501 6.501 24 C -0.147 4.147 25 C -0.102 4.102 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.384 0.616 42 H 0.124 0.876 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 8.410 13.618 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.295 3.705 15 O -0.416 6.416 16 C -0.053 4.053 17 C -0.198 4.198 18 C -0.195 4.195 19 C -0.053 4.053 20 C -0.093 4.093 21 C -0.162 4.162 22 C 0.049 3.951 23 O -0.311 6.311 24 C -0.166 4.166 25 C -0.120 4.120 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.239 0.761 42 H 0.142 0.858 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.266 7.848 12.270 17.263 hybrid contribution 1.297 0.249 0.488 1.408 sum -7.969 8.097 12.758 17.083 Atomic orbital electron populations 1.21839 0.98350 0.97936 1.01282 1.21930 0.92575 0.99894 1.02176 1.18755 0.94057 0.89120 0.81072 0.93415 1.21191 0.90766 1.39074 1.06255 0.92208 1.24880 0.98506 0.94831 0.95411 1.69888 1.35185 1.37512 1.09325 0.86537 0.84984 0.78287 0.77445 1.20182 1.21156 1.20214 1.46465 1.14372 1.56169 1.18359 1.20021 0.82795 0.79400 0.88294 1.90696 1.51364 1.59343 1.40229 1.19812 0.93519 0.96231 0.95705 1.21912 1.03020 0.97980 0.96888 1.21874 0.97715 0.97998 1.01866 1.19386 0.93947 0.95351 0.96591 1.20833 0.97062 0.95010 0.96357 1.21331 0.92174 1.01655 1.01082 1.18450 0.84439 0.94999 0.97163 1.84848 1.32763 1.51473 1.61981 1.21300 0.97763 0.97914 0.99615 1.21004 0.91642 0.99519 0.99793 0.94235 0.93209 0.95986 0.88376 0.95128 0.92528 0.78116 0.91498 0.91580 0.91785 0.91879 0.91820 0.91438 0.85816 0.85710 0.76069 0.85789 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.15 0.32 -2.78 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.62 11.29 55.43 0.63 -23.99 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -14.14 4.86 -54.93 -0.27 -14.41 16 14 C 0.51 9.79 4.91 -10.99 -0.05 9.73 16 15 O -0.54 -12.43 12.67 5.56 0.07 -12.36 16 16 C -0.05 -0.70 0.72 -156.81 -0.11 -0.81 16 17 C -0.14 -1.66 7.11 37.16 0.26 -1.40 16 18 C -0.14 -1.64 8.07 37.16 0.30 -1.34 16 19 C -0.05 -0.76 4.24 -104.60 -0.44 -1.20 16 20 C -0.07 -1.10 8.37 -39.61 -0.33 -1.43 16 21 C -0.14 -1.96 9.99 -39.44 -0.39 -2.35 16 22 C 0.09 1.22 6.70 -39.22 -0.26 0.96 16 23 O -0.50 -5.67 13.50 -19.44 -0.26 -5.94 16 24 C -0.15 -1.85 9.99 -39.43 -0.39 -2.24 16 25 C -0.10 -1.33 8.99 -39.60 -0.36 -1.68 16 26 H 0.04 0.86 5.63 -51.93 -0.29 0.57 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 6.76 7.45 -40.82 -0.30 6.46 16 33 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 34 H 0.07 0.62 7.77 -51.93 -0.40 0.22 16 35 H 0.06 0.80 7.25 -51.92 -0.38 0.43 16 36 H 0.06 0.79 7.08 -51.93 -0.37 0.42 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.77 7.27 -51.93 -0.38 0.39 16 39 H 0.12 1.83 7.23 -52.49 -0.38 1.46 16 40 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.38 2.26 9.06 45.56 0.41 2.67 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.13 1.43 5.90 -52.49 -0.31 1.12 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -31.65 343.05 -7.42 -39.08 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.58 Total: 10.76 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.16 Total: -13.71 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.36 Total: -38.40 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.19 Total: -18.30 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.65 -7.42 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279478748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.146 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds