Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47381 * 2 1 4 4 H 1.09000 * 109.47081 * 305.00109 * 3 2 1 5 5 C 1.50695 * 109.47151 * 184.99772 * 3 2 1 6 6 H 1.07998 * 120.00254 * 239.99645 * 5 3 2 7 7 C 1.37875 * 119.99978 * 60.00008 * 5 3 2 8 8 N 1.31515 * 120.00029 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00257 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46906 * 60.00140 * 9 7 5 11 11 H 1.48500 * 109.47505 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47227 * 300.00434 * 9 7 5 13 13 N 1.46502 * 109.46784 * 64.99963 * 3 2 1 14 14 C 1.34772 * 120.00039 * 275.27137 * 13 3 2 15 15 O 1.21282 * 120.00083 * 359.73495 * 14 13 3 16 16 C 1.50700 * 120.00167 * 179.72751 * 14 13 3 17 17 C 1.53002 * 109.47171 * 294.51792 * 16 14 13 18 18 C 1.52998 * 109.47286 * 54.51651 * 16 14 13 19 19 C 1.50703 * 109.47302 * 174.51872 * 16 14 13 20 20 C 1.38265 * 119.94164 * 294.11905 * 19 16 14 21 21 C 1.38146 * 120.05125 * 179.72565 * 20 19 16 22 22 C 1.38724 * 119.94780 * 0.56570 * 21 20 19 23 23 O 1.35905 * 120.05850 * 179.68263 * 22 21 20 24 24 C 1.38733 * 119.89035 * 359.70646 * 22 21 20 25 25 C 1.38154 * 119.93913 * 359.97438 * 24 22 21 26 26 H 1.09007 * 109.47240 * 300.00091 * 1 2 3 27 27 H 1.08999 * 109.47516 * 59.99947 * 1 2 3 28 28 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46992 * 239.99944 * 2 1 3 30 30 H 1.09004 * 109.46814 * 120.00109 * 2 1 3 31 31 H 0.97005 * 120.00063 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00120 * 95.00531 * 13 3 2 33 33 H 1.08999 * 109.46988 * 59.99740 * 17 16 14 34 34 H 1.08996 * 109.46997 * 180.02562 * 17 16 14 35 35 H 1.09008 * 109.47161 * 299.99965 * 17 16 14 36 36 H 1.09002 * 109.46628 * 60.00085 * 18 16 14 37 37 H 1.08996 * 109.47174 * 179.97438 * 18 16 14 38 38 H 1.08999 * 109.47010 * 300.00344 * 18 16 14 39 39 H 1.07998 * 119.97623 * 359.97438 * 20 19 16 40 40 H 1.08006 * 120.02577 * 180.25237 * 21 20 19 41 41 H 0.96698 * 113.99589 * 270.02560 * 23 22 21 42 42 H 1.07995 * 120.03488 * 179.97438 * 24 22 21 43 43 H 1.07997 * 119.96733 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8810 -1.3817 10 1 6.5974 0.1470 -0.2348 11 1 6.3978 0.2175 -2.6508 12 1 6.4995 2.2813 -1.3820 13 7 1.6524 2.0974 1.2518 14 6 0.4331 2.6596 1.3689 15 8 -0.3415 2.6274 0.4362 16 6 0.0321 3.3279 2.6587 17 6 -0.0528 2.2806 3.7708 18 6 1.0744 4.3841 3.0314 19 6 -1.3119 3.9874 2.4860 20 6 -1.4502 5.0556 1.6190 21 6 -2.6823 5.6582 1.4548 22 6 -3.7789 5.1985 2.1694 23 8 -4.9907 5.7938 2.0144 24 6 -3.6363 4.1302 3.0429 25 6 -2.4034 3.5266 3.1987 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8293 -0.0613 -2.9498 32 1 2.2719 2.1231 1.9978 33 1 0.9192 1.8035 3.8957 34 1 -0.3433 2.7639 4.7036 35 1 -0.7955 1.5281 3.5053 36 1 1.1349 5.1302 2.2390 37 1 0.7842 4.8678 3.9640 38 1 2.0465 3.9070 3.1562 39 1 -0.5951 5.4165 1.0668 40 1 -2.7908 6.4900 0.7744 41 1 -5.1495 6.5272 2.6243 42 1 -4.4883 3.7706 3.6007 43 1 -2.2918 2.6952 3.8789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279478748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -89.561287 kcal Electronic energy + Delta-G solvation = -23962.841710 eV Core-core repulsion = 20585.802080 eV Total energy + Delta-G solvation = -3377.039629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60721 -40.20053 -38.15321 -36.77844 -35.64451 -34.14929 -32.59386 -32.06041 -29.74649 -28.78048 -28.30244 -25.34101 -24.59027 -23.43727 -22.98081 -21.46768 -20.50249 -19.35616 -18.76038 -17.53306 -17.25153 -16.85538 -16.58845 -16.21952 -16.03168 -15.66104 -15.22682 -14.91866 -14.57750 -14.44069 -14.18931 -13.70339 -13.50300 -13.28173 -13.18285 -13.15992 -12.93139 -12.90068 -12.84824 -12.78003 -12.64162 -12.16599 -12.07601 -12.03306 -11.89459 -11.57111 -11.26235 -11.03913 -10.55463 -10.36611 -9.88409 -9.55667 -9.39379 -8.14432 -6.31996 0.29098 0.45073 1.45220 1.46860 1.54571 1.94374 2.36421 2.55906 2.92620 3.14960 3.31576 3.57520 3.82213 4.01338 4.09947 4.17553 4.20516 4.45411 4.49134 4.57369 4.63723 4.76378 4.78469 4.82724 4.88156 4.92506 4.99860 5.07709 5.09408 5.22024 5.26101 5.29647 5.43394 5.45336 5.48474 5.57825 5.66860 5.70040 5.81743 5.93063 5.97284 6.19312 6.76875 6.89733 7.06751 7.35847 7.66723 8.90480 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.003903 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.817749 B = 7173.066081 C = 7294.275339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.007 1.007 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.702 5.702 14 C 0.507 3.493 15 O -0.583 6.583 16 C -0.038 4.038 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.071 4.071 20 C -0.093 4.093 21 C -0.158 4.158 22 C 0.094 3.906 23 O -0.510 6.510 24 C -0.150 4.150 25 C -0.102 4.102 26 H 0.045 0.955 27 H 0.020 0.980 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.409 0.591 42 H 0.148 0.852 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 8.580 16.426 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.011 0.989 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.351 5.351 14 C 0.294 3.706 15 O -0.463 6.463 16 C -0.042 4.042 17 C -0.196 4.196 18 C -0.192 4.192 19 C -0.072 4.072 20 C -0.111 4.111 21 C -0.177 4.177 22 C 0.050 3.950 23 O -0.323 6.323 24 C -0.168 4.168 25 C -0.120 4.120 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.268 0.732 42 H 0.166 0.834 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.183 8.049 15.137 19.448 hybrid contribution 1.152 0.270 -0.415 1.254 sum -8.031 8.318 14.722 18.720 Atomic orbital electron populations 1.21667 0.97163 0.98912 1.00169 1.21773 0.93524 0.99346 1.01213 1.18301 0.93482 0.89015 0.81505 0.98862 1.21558 0.91483 1.38825 1.06656 0.90972 1.25766 1.03207 0.94427 0.95061 1.70054 1.37104 1.38401 1.09862 0.85454 0.79257 0.78430 0.77526 1.18793 1.21404 1.19677 1.46212 1.15371 1.56228 1.17261 1.20967 0.81613 0.78336 0.89703 1.90676 1.52487 1.60746 1.42406 1.19762 0.94068 0.97038 0.93307 1.21965 1.03378 0.97215 0.97087 1.21900 0.97405 0.97203 1.02730 1.19512 0.94611 0.95629 0.97426 1.20870 0.97246 0.95954 0.97012 1.21492 0.92250 1.02199 1.01719 1.18557 0.84584 0.95159 0.96681 1.84781 1.31730 1.52597 1.63165 1.21599 0.98405 0.97405 0.99426 1.21278 0.91260 0.99751 0.99700 0.93571 0.96035 0.93800 0.91232 0.93942 0.92708 0.76372 0.90818 0.88260 0.92545 0.93242 0.88944 0.90716 0.87208 0.84943 0.73209 0.83403 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.33 2.24 44.24 0.10 14.43 16 4 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 5 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.92 -52.67 11.29 21.45 0.24 -52.43 16 9 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.70 -28.25 4.86 -446.10 -2.17 -30.42 16 14 C 0.51 19.58 4.91 87.66 0.43 20.02 16 15 O -0.58 -27.91 12.67 -3.04 -0.04 -27.94 16 16 C -0.04 -1.04 0.72 -53.67 -0.04 -1.08 16 17 C -0.14 -2.87 7.11 71.98 0.51 -2.36 16 18 C -0.14 -3.00 8.07 71.98 0.58 -2.42 16 19 C -0.07 -2.00 4.24 -19.85 -0.08 -2.08 16 20 C -0.09 -2.77 8.37 22.25 0.19 -2.58 16 21 C -0.16 -4.28 9.99 22.36 0.22 -4.05 16 22 C 0.09 2.32 6.70 22.50 0.15 2.47 16 23 O -0.51 -10.52 13.50 -92.49 -1.25 -11.77 16 24 C -0.15 -3.40 9.99 22.37 0.22 -3.18 16 25 C -0.10 -2.44 8.99 22.26 0.20 -2.24 16 26 H 0.05 2.03 5.63 -2.38 -0.01 2.02 16 27 H 0.02 1.07 7.84 -2.39 -0.02 1.05 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 32 H 0.40 13.63 7.45 -92.71 -0.69 12.94 16 33 H 0.07 1.43 7.96 -2.39 -0.02 1.41 16 34 H 0.10 1.42 7.77 -2.39 -0.02 1.40 16 35 H 0.06 1.26 7.25 -2.38 -0.02 1.24 16 36 H 0.05 1.22 7.08 -2.39 -0.02 1.21 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.53 7.27 -2.39 -0.02 1.51 16 39 H 0.11 3.46 7.23 -2.91 -0.02 3.44 16 40 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.41 3.82 9.06 -74.06 -0.67 3.15 16 42 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.15 2.84 5.90 -2.91 -0.02 2.82 16 Total: -1.00 -70.90 343.05 2.42 -68.49 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.33 Total: 31.20 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.93 Total: -21.01 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.92 Total: -82.84 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.29 Total: -39.71 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -70.90 2.42 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279478748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.074 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds