Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 N 1.46504 * 109.46597 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99986 * 275.30825 * 4 3 2 6 6 H 1.08002 * 120.00015 * 37.57880 * 5 4 3 7 7 C 1.38806 * 120.00064 * 217.58456 * 5 4 3 8 8 N 1.31622 * 120.00160 * 21.42173 * 7 5 4 9 9 Si 1.86799 * 120.00236 * 201.42846 * 7 5 4 10 10 H 1.48500 * 109.47479 * 89.99431 * 9 7 5 11 11 H 1.48499 * 109.47259 * 209.99716 * 9 7 5 12 12 H 1.48501 * 109.46567 * 329.99600 * 9 7 5 13 13 C 1.46498 * 119.99737 * 95.31281 * 4 3 2 14 14 C 1.53001 * 109.47143 * 269.99491 * 13 4 3 15 15 C 1.50691 * 109.47040 * 180.02562 * 14 13 4 16 16 O 1.21293 * 120.00598 * 359.97438 * 15 14 13 17 17 C 1.46861 * 119.99772 * 179.97438 * 15 14 13 18 18 C 1.40039 * 120.11424 * 359.72899 * 17 15 14 19 19 C 1.37121 * 119.88074 * 179.74054 * 18 17 15 20 20 C 1.39077 * 120.11857 * 0.53143 * 19 18 17 21 21 O 1.35660 * 119.88907 * 179.69876 * 20 19 18 22 22 C 1.42904 * 116.99628 * 0.02562 * 21 20 19 23 23 C 1.39084 * 120.22932 * 359.71673 * 20 19 18 24 24 C 1.37121 * 120.11526 * 0.02846 * 23 20 19 25 25 H 1.09001 * 109.47426 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47398 * 300.00215 * 1 2 3 27 27 H 1.09005 * 109.47352 * 60.00146 * 1 2 3 28 28 H 1.09001 * 109.46864 * 240.00528 * 2 1 3 29 29 H 1.09000 * 109.46935 * 120.00071 * 2 1 3 30 30 H 1.09000 * 109.46660 * 60.00106 * 3 2 1 31 31 H 1.08995 * 109.47037 * 299.99529 * 3 2 1 32 32 H 0.96995 * 120.00027 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46799 * 149.99925 * 13 4 3 34 34 H 1.09002 * 109.47126 * 29.99796 * 13 4 3 35 35 H 1.09003 * 109.46688 * 60.00016 * 14 13 4 36 36 H 1.09000 * 109.46694 * 300.00493 * 14 13 4 37 37 H 1.07996 * 120.05845 * 359.96830 * 18 17 15 38 38 H 1.08000 * 119.94045 * 180.25369 * 19 18 17 39 39 H 1.08993 * 109.47073 * 299.99934 * 22 21 20 40 40 H 1.08999 * 109.46942 * 60.00196 * 22 21 20 41 41 H 1.08999 * 109.46476 * 180.02562 * 22 21 20 42 42 H 1.07991 * 119.94539 * 179.97438 * 23 20 19 43 43 H 1.08002 * 120.06106 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8169 0.6876 1.9636 7 6 5.3611 2.0514 1.3742 8 7 5.6020 3.1240 0.6503 9 14 6.5967 1.4960 2.6604 10 1 7.5669 0.5572 2.0419 11 1 7.3218 2.6775 3.1929 12 1 5.8836 0.8119 3.7688 13 6 4.2380 1.5598 -1.2624 14 6 4.4933 0.1642 -1.8354 15 6 5.2478 0.2849 -3.1342 16 8 5.5511 1.3793 -3.5601 17 6 5.6158 -0.9228 -3.8844 18 6 5.2718 -2.1879 -3.3921 19 6 5.6132 -3.3121 -4.0992 20 6 6.3095 -3.1981 -5.2977 21 8 6.6502 -4.3137 -5.9903 22 6 6.2611 -5.5693 -5.4298 23 6 6.6581 -1.9443 -5.7884 24 6 6.3170 -0.8136 -5.0918 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4211 3.6259 0.7846 33 1 5.1903 2.0593 -1.0847 34 1 3.6492 2.1416 -1.9715 35 1 3.5409 -0.3353 -2.0130 36 1 5.0820 -0.4175 -1.1261 37 1 4.7354 -2.2778 -2.4591 38 1 5.3447 -4.2880 -3.7225 39 1 6.7163 -5.6848 -4.4462 40 1 5.1759 -5.6039 -5.3344 41 1 6.5949 -6.3769 -6.0814 42 1 7.1992 -1.8611 -6.7193 43 1 6.5885 0.1596 -5.4735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286459036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = -39.918266 kcal Electronic energy + Delta-G solvation = -23003.095098 eV Core-core repulsion = 19628.208152 eV Total energy + Delta-G solvation = -3374.886947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40475 -39.02021 -37.03314 -36.11839 -32.97358 -31.88918 -31.07166 -30.50740 -29.34671 -27.63919 -25.51868 -24.60133 -23.17118 -22.38561 -21.09625 -20.07622 -19.14120 -18.40489 -16.86257 -16.33989 -16.02127 -15.96316 -15.05698 -14.78499 -14.53330 -14.39106 -14.17087 -13.76889 -13.67081 -13.42254 -12.87020 -12.84199 -12.74394 -12.60077 -12.11382 -12.02017 -11.55232 -11.38601 -11.20281 -11.10714 -10.95912 -10.83969 -10.73181 -10.37666 -10.31741 -10.02912 -9.69764 -9.54010 -9.19162 -9.08779 -8.42227 -8.31335 -6.52047 -5.73078 -3.34069 0.82852 1.29044 2.74981 2.99414 3.37632 3.45460 3.46501 3.85066 4.41917 4.55709 4.58205 4.71056 4.84582 4.85497 5.15045 5.23102 5.30387 5.33918 5.44615 5.52963 5.64020 5.72139 5.82495 5.91919 6.01659 6.08723 6.11810 6.17904 6.28241 6.30845 6.42794 6.53514 6.55848 6.57917 6.65192 6.82010 6.99314 7.09593 7.14112 7.21032 7.80593 7.88648 8.08607 8.57357 9.24085 9.86595 10.45538 11.25797 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.004120 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.571132 B = 6795.185545 C = 7522.260665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.145 3.855 4 N -0.585 5.585 5 C -0.266 4.266 6 H 0.060 0.940 7 C 0.015 3.985 8 N -0.881 5.881 9 Si 0.893 3.107 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.157 3.843 14 C -0.182 4.182 15 C 0.396 3.604 16 O -0.454 6.454 17 C -0.199 4.199 18 C -0.029 4.029 19 C -0.223 4.223 20 C 0.148 3.852 21 O -0.316 6.316 22 C 0.025 3.975 23 C -0.167 4.167 24 C -0.027 4.027 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.255 0.745 33 H 0.100 0.900 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -15.247 -10.942 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.019 3.981 4 N -0.304 5.304 5 C -0.395 4.395 6 H 0.078 0.922 7 C -0.187 4.187 8 N -0.523 5.523 9 Si 0.723 3.277 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.031 3.969 14 C -0.222 4.222 15 C 0.273 3.727 16 O -0.330 6.330 17 C -0.200 4.200 18 C -0.047 4.047 19 C -0.242 4.242 20 C 0.102 3.898 21 O -0.229 6.229 22 C -0.070 4.070 23 C -0.186 4.186 24 C -0.045 4.045 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.047 0.953 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.298 -14.524 -11.313 18.456 hybrid contribution 0.596 -0.750 0.863 1.289 sum -0.702 -15.274 -10.450 18.520 Atomic orbital electron populations 1.21734 0.97458 1.00258 1.01094 1.22175 0.93669 1.01216 1.01208 1.20918 0.85653 0.92758 0.98792 1.43791 0.99234 1.84865 1.02551 1.18989 1.05740 1.20572 0.94230 0.92209 1.25211 1.00900 0.94590 0.97950 1.70011 1.25499 1.14688 1.42100 0.86449 0.81797 0.77936 0.81556 1.21320 1.21705 1.20235 1.20730 1.00331 0.90415 0.85460 1.22787 0.99788 1.05528 0.94075 1.22727 0.76301 0.86986 0.86645 1.90496 1.45234 1.29483 1.67775 1.20808 1.05433 0.95616 0.98159 1.21230 0.94364 0.90820 0.98329 1.21092 1.06210 1.00068 0.96793 1.19359 0.93070 0.86814 0.90555 1.86015 1.75015 1.13427 1.48460 1.23102 1.00537 0.83292 1.00028 1.20257 1.06347 0.89309 1.02644 1.21164 0.92384 0.98567 0.92386 0.93926 0.93200 0.93451 0.93170 0.92443 0.93854 0.94856 0.93464 0.88283 0.95349 0.90177 0.88850 0.84398 0.85040 0.92364 0.92390 0.88205 0.84868 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.49 6.23 -26.73 -0.17 -2.66 16 3 C 0.15 3.06 5.72 -4.04 -0.02 3.03 16 4 N -0.59 -14.43 2.43 -173.23 -0.42 -14.86 16 5 C -0.27 -7.16 9.45 -15.06 -0.14 -7.30 16 6 H 0.06 1.60 7.92 -52.49 -0.42 1.19 16 7 C 0.01 0.40 4.95 -17.43 -0.09 0.32 16 8 N -0.88 -25.87 11.47 55.49 0.64 -25.24 16 9 Si 0.89 21.51 29.60 -169.99 -5.03 16.48 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.16 3.77 4.62 -4.04 -0.02 3.75 16 14 C -0.18 -3.51 4.63 -27.89 -0.13 -3.64 16 15 C 0.40 7.37 7.11 -30.83 -0.22 7.15 16 16 O -0.45 -9.82 15.97 5.55 0.09 -9.73 16 17 C -0.20 -3.05 5.87 -105.06 -0.62 -3.67 16 18 C -0.03 -0.38 9.44 -39.31 -0.37 -0.75 16 19 C -0.22 -2.53 8.99 -39.68 -0.36 -2.89 16 20 C 0.15 1.76 6.70 -38.96 -0.26 1.50 16 21 O -0.32 -3.36 10.48 -18.68 -0.20 -3.56 16 22 C 0.03 0.17 9.80 101.05 0.99 1.16 16 23 C -0.17 -2.05 9.95 -39.67 -0.39 -2.45 16 24 C -0.03 -0.38 9.57 -39.31 -0.38 -0.75 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.85 6.64 -51.93 -0.34 0.50 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.10 2.77 5.48 -51.93 -0.28 2.48 16 34 H 0.03 0.68 7.82 -51.93 -0.41 0.28 16 35 H 0.08 1.38 6.59 -51.93 -0.34 1.04 16 36 H 0.09 1.84 8.07 -51.93 -0.42 1.42 16 37 H 0.14 1.63 7.04 -52.49 -0.37 1.26 16 38 H 0.13 1.14 6.27 -52.49 -0.33 0.81 16 39 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 40 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.14 1.90 7.64 -52.49 -0.40 1.50 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -31.47 355.97 -7.97 -39.43 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.60 Total: 1.03 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.80 Total: -8.93 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.21 Total: -40.09 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.11 Total: -13.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.47 -7.97 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286459036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.483 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds