Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 N 1.46504 * 109.46597 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99986 * 275.30825 * 4 3 2 6 6 H 1.08002 * 120.00015 * 37.57880 * 5 4 3 7 7 C 1.38806 * 120.00064 * 217.58456 * 5 4 3 8 8 N 1.31622 * 120.00160 * 21.42173 * 7 5 4 9 9 Si 1.86799 * 120.00236 * 201.42846 * 7 5 4 10 10 H 1.48500 * 109.47479 * 89.99431 * 9 7 5 11 11 H 1.48499 * 109.47259 * 209.99716 * 9 7 5 12 12 H 1.48501 * 109.46567 * 329.99600 * 9 7 5 13 13 C 1.46498 * 119.99737 * 95.31281 * 4 3 2 14 14 C 1.53001 * 109.47143 * 269.99491 * 13 4 3 15 15 C 1.50691 * 109.47040 * 180.02562 * 14 13 4 16 16 O 1.21293 * 120.00598 * 359.97438 * 15 14 13 17 17 C 1.46861 * 119.99772 * 179.97438 * 15 14 13 18 18 C 1.40039 * 120.11424 * 359.72899 * 17 15 14 19 19 C 1.37121 * 119.88074 * 179.74054 * 18 17 15 20 20 C 1.39077 * 120.11857 * 0.53143 * 19 18 17 21 21 O 1.35660 * 119.88907 * 179.69876 * 20 19 18 22 22 C 1.42904 * 116.99628 * 0.02562 * 21 20 19 23 23 C 1.39084 * 120.22932 * 359.71673 * 20 19 18 24 24 C 1.37121 * 120.11526 * 0.02846 * 23 20 19 25 25 H 1.09001 * 109.47426 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47398 * 300.00215 * 1 2 3 27 27 H 1.09005 * 109.47352 * 60.00146 * 1 2 3 28 28 H 1.09001 * 109.46864 * 240.00528 * 2 1 3 29 29 H 1.09000 * 109.46935 * 120.00071 * 2 1 3 30 30 H 1.09000 * 109.46660 * 60.00106 * 3 2 1 31 31 H 1.08995 * 109.47037 * 299.99529 * 3 2 1 32 32 H 0.96995 * 120.00027 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46799 * 149.99925 * 13 4 3 34 34 H 1.09002 * 109.47126 * 29.99796 * 13 4 3 35 35 H 1.09003 * 109.46688 * 60.00016 * 14 13 4 36 36 H 1.09000 * 109.46694 * 300.00493 * 14 13 4 37 37 H 1.07996 * 120.05845 * 359.96830 * 18 17 15 38 38 H 1.08000 * 119.94045 * 180.25369 * 19 18 17 39 39 H 1.08993 * 109.47073 * 299.99934 * 22 21 20 40 40 H 1.08999 * 109.46942 * 60.00196 * 22 21 20 41 41 H 1.08999 * 109.46476 * 180.02562 * 22 21 20 42 42 H 1.07991 * 119.94539 * 179.97438 * 23 20 19 43 43 H 1.08002 * 120.06106 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8169 0.6876 1.9636 7 6 5.3611 2.0514 1.3742 8 7 5.6020 3.1240 0.6503 9 14 6.5967 1.4960 2.6604 10 1 7.5669 0.5572 2.0419 11 1 7.3218 2.6775 3.1929 12 1 5.8836 0.8119 3.7688 13 6 4.2380 1.5598 -1.2624 14 6 4.4933 0.1642 -1.8354 15 6 5.2478 0.2849 -3.1342 16 8 5.5511 1.3793 -3.5601 17 6 5.6158 -0.9228 -3.8844 18 6 5.2718 -2.1879 -3.3921 19 6 5.6132 -3.3121 -4.0992 20 6 6.3095 -3.1981 -5.2977 21 8 6.6502 -4.3137 -5.9903 22 6 6.2611 -5.5693 -5.4298 23 6 6.6581 -1.9443 -5.7884 24 6 6.3170 -0.8136 -5.0918 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4211 3.6259 0.7846 33 1 5.1903 2.0593 -1.0847 34 1 3.6492 2.1416 -1.9715 35 1 3.5409 -0.3353 -2.0130 36 1 5.0820 -0.4175 -1.1261 37 1 4.7354 -2.2778 -2.4591 38 1 5.3447 -4.2880 -3.7225 39 1 6.7163 -5.6848 -4.4462 40 1 5.1759 -5.6039 -5.3344 41 1 6.5949 -6.3769 -6.0814 42 1 7.1992 -1.8611 -6.7193 43 1 6.5885 0.1596 -5.4735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286459036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = -57.155610 kcal Electronic energy + Delta-G solvation = -23003.842566 eV Core-core repulsion = 19628.208152 eV Total energy + Delta-G solvation = -3375.634414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39801 -40.30880 -38.17077 -37.82728 -34.62086 -33.43025 -32.43077 -31.70478 -30.78626 -28.36447 -27.31139 -26.14957 -24.36269 -23.54220 -22.48716 -21.78843 -20.52203 -19.28380 -18.67860 -17.43257 -17.26180 -16.96349 -16.71856 -16.23778 -16.03968 -15.65318 -15.47670 -15.38311 -14.74276 -14.64846 -14.29436 -14.26081 -13.85857 -13.69512 -13.44396 -13.25583 -12.96147 -12.88229 -12.77633 -12.55467 -12.49286 -12.15217 -12.02345 -11.97643 -11.85639 -11.77610 -11.50388 -11.23743 -10.61416 -10.46480 -10.15916 -9.29815 -8.54741 -7.79243 -5.45725 -0.29305 0.33148 1.45817 1.46961 1.47653 1.56574 2.25973 2.50641 2.77400 3.07151 3.29204 3.70288 3.80658 3.85181 4.15606 4.25142 4.31296 4.35349 4.40554 4.42192 4.44858 4.47558 4.53944 4.65778 4.75138 4.76237 4.84932 4.93720 4.98514 5.03477 5.11730 5.21559 5.24010 5.29929 5.32775 5.46499 5.49635 5.60333 5.67129 5.69327 5.85654 6.31991 6.47493 6.66031 7.18239 7.87871 8.41898 9.15315 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.004120 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.571132 B = 6795.185545 C = 7522.260665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.141 3.859 4 N -0.601 5.601 5 C -0.265 4.265 6 H 0.062 0.938 7 C -0.039 4.039 8 N -0.920 5.920 9 Si 0.956 3.044 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.263 1.263 13 C 0.162 3.838 14 C -0.166 4.166 15 C 0.399 3.601 16 O -0.500 6.500 17 C -0.226 4.226 18 C -0.026 4.026 19 C -0.218 4.218 20 C 0.156 3.844 21 O -0.325 6.325 22 C 0.013 3.987 23 C -0.172 4.172 24 C -0.033 4.033 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.249 0.751 33 H 0.058 0.942 34 H 0.014 0.986 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.150 0.850 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -19.022 -11.237 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.016 3.984 4 N -0.322 5.322 5 C -0.396 4.396 6 H 0.080 0.920 7 C -0.236 4.236 8 N -0.564 5.564 9 Si 0.784 3.216 10 H -0.211 1.211 11 H -0.224 1.224 12 H -0.187 1.187 13 C 0.036 3.964 14 C -0.206 4.206 15 C 0.280 3.720 16 O -0.379 6.379 17 C -0.227 4.227 18 C -0.044 4.044 19 C -0.236 4.236 20 C 0.109 3.891 21 O -0.238 6.238 22 C -0.081 4.081 23 C -0.190 4.190 24 C -0.051 4.051 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.140 0.860 42 H 0.168 0.832 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.034 -18.351 -11.606 21.809 hybrid contribution 0.768 0.315 0.870 1.202 sum -1.267 -18.036 -10.736 21.028 Atomic orbital electron populations 1.21676 0.94656 1.01973 1.01591 1.21964 0.95986 0.97905 1.01054 1.21068 0.83727 0.95397 0.98222 1.44017 1.00708 1.85289 1.02142 1.19254 1.05877 1.19628 0.94799 0.92002 1.25950 1.02782 0.94678 1.00176 1.70174 1.25711 1.16223 1.44306 0.85455 0.79467 0.77142 0.79584 1.21088 1.22430 1.18699 1.20479 0.97961 0.92753 0.85256 1.22513 1.01281 1.02348 0.94426 1.22894 0.75131 0.87688 0.86274 1.90482 1.47273 1.31294 1.68825 1.20515 1.08196 0.94939 0.99042 1.21375 0.93974 0.90231 0.98787 1.21384 1.05165 1.00875 0.96165 1.19505 0.91857 0.87224 0.90466 1.86024 1.74779 1.14241 1.48773 1.23470 1.01640 0.81876 1.01116 1.20414 1.06344 0.89151 1.03133 1.21160 0.92561 0.99104 0.92316 0.91569 0.93140 0.92619 0.92360 0.93492 0.95326 0.94547 0.94168 0.92423 0.96722 0.87577 0.88965 0.83180 0.81792 0.91362 0.91095 0.85986 0.83192 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.13 -4.29 6.23 30.60 0.19 -4.10 16 3 C 0.14 5.95 5.72 86.38 0.49 6.44 16 4 N -0.60 -30.19 2.43 -701.99 -1.71 -31.90 16 5 C -0.27 -14.48 9.45 84.03 0.79 -13.68 16 6 H 0.06 3.30 7.92 -2.91 -0.02 3.28 16 7 C -0.04 -2.17 4.95 84.86 0.42 -1.75 16 8 N -0.92 -56.28 11.47 21.65 0.25 -56.04 16 9 Si 0.96 44.92 29.60 68.60 2.03 46.95 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 13 C 0.16 8.07 4.62 86.38 0.40 8.47 16 14 C -0.17 -6.47 4.63 29.85 0.14 -6.33 16 15 C 0.40 15.26 7.11 27.94 0.20 15.46 16 16 O -0.50 -22.87 15.97 -3.07 -0.05 -22.92 16 17 C -0.23 -6.84 5.87 -20.15 -0.12 -6.96 16 18 C -0.03 -0.61 9.44 22.44 0.21 -0.40 16 19 C -0.22 -4.19 8.99 22.21 0.20 -3.99 16 20 C 0.16 3.27 6.70 22.67 0.15 3.42 16 21 O -0.33 -5.81 10.48 -89.76 -0.94 -6.75 16 22 C 0.01 0.12 9.80 113.37 1.11 1.23 16 23 C -0.17 -3.96 9.95 22.21 0.22 -3.74 16 24 C -0.03 -0.92 9.57 22.45 0.21 -0.71 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.83 6.64 -2.39 -0.02 1.81 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.04 1.48 7.83 -2.39 -0.02 1.46 16 32 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.06 3.41 5.48 -2.39 -0.01 3.39 16 34 H 0.01 0.73 7.82 -2.39 -0.02 0.72 16 35 H 0.11 3.53 6.59 -2.39 -0.02 3.51 16 36 H 0.09 3.62 8.07 -2.39 -0.02 3.60 16 37 H 0.15 3.14 7.04 -2.91 -0.02 3.12 16 38 H 0.16 2.05 6.27 -2.91 -0.02 2.03 16 39 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 40 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 41 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.15 2.85 8.06 -2.92 -0.02 2.83 16 43 H 0.13 3.77 7.64 -2.91 -0.02 3.75 16 Total: -1.00 -70.94 355.97 5.91 -65.03 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.99 Total: 15.18 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.34 Total: -9.55 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.46 Total: -87.94 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.99 Total: -29.67 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.94 5.91 -65.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286459036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.878 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds