Wall clock time and date at job start Tue Mar 31 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 N 1.46493 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99811 * 90.00429 * 4 3 2 6 6 C 1.50703 * 109.47289 * 89.99713 * 5 4 3 7 7 C 1.38161 * 120.02675 * 260.00179 * 6 5 4 8 8 C 1.38243 * 120.05456 * 179.97438 * 7 6 5 9 9 C 1.38283 * 120.11062 * 0.02562 * 8 7 6 10 10 C 1.38128 * 120.05871 * 0.02566 * 9 8 7 11 11 C 1.38705 * 120.02504 * 79.72349 * 6 5 4 12 12 O 1.35905 * 120.05740 * 0.02562 * 11 6 5 13 13 C 1.34778 * 120.00131 * 269.99999 * 4 3 2 14 14 O 1.21279 * 119.99362 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99888 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.46881 * 179.97438 * 15 13 4 17 17 C 1.50696 * 109.46881 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00439 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00045 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00126 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99947 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47135 * 89.99613 * 21 19 17 23 23 H 1.48494 * 109.47198 * 209.99989 * 21 19 17 24 24 H 1.48506 * 109.46875 * 330.00384 * 21 19 17 25 25 H 1.09005 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47602 * 300.00018 * 1 2 3 27 27 H 1.08996 * 109.47242 * 60.00308 * 1 2 3 28 28 H 1.09001 * 109.46881 * 239.99991 * 2 1 3 29 29 H 1.08997 * 109.46990 * 120.00180 * 2 1 3 30 30 H 1.09006 * 109.46591 * 59.99524 * 3 2 1 31 31 H 1.09005 * 109.46719 * 300.00285 * 3 2 1 32 32 H 1.09001 * 109.47060 * 210.00163 * 5 4 3 33 33 H 1.09004 * 109.47073 * 329.99652 * 5 4 3 34 34 H 1.08000 * 119.97625 * 359.97306 * 7 6 5 35 35 H 1.08000 * 119.94599 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.97589 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.03024 * 179.97438 * 10 9 8 38 38 H 0.96695 * 114.00134 * 90.00314 * 12 11 6 39 39 H 1.08997 * 109.47440 * 299.99997 * 15 13 4 40 40 H 1.09001 * 109.47288 * 59.99909 * 15 13 4 41 41 H 1.09002 * 109.46736 * 299.99893 * 16 15 13 42 42 H 1.09001 * 109.47233 * 59.99877 * 16 15 13 43 43 H 0.96999 * 119.99960 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2380 1.4424 -1.2679 6 6 4.4893 2.8632 -1.7030 7 6 3.6826 3.4456 -2.6615 8 6 3.9123 4.7491 -3.0607 9 6 4.9499 5.4730 -2.5024 10 6 5.7599 4.8949 -1.5445 11 6 5.5271 3.5890 -1.1373 12 8 6.3188 3.0200 -0.1905 13 6 4.1784 1.4426 1.1681 14 8 5.3912 1.4431 1.1685 15 6 3.4244 1.4423 2.4729 16 6 4.4182 1.4419 3.6362 17 6 3.6642 1.4422 4.9409 18 1 2.5842 1.4430 4.9406 19 6 4.3531 1.4414 6.1353 20 7 3.6950 1.4421 7.2740 21 14 6.2211 1.4407 6.1361 22 1 6.7166 2.8406 6.1368 23 1 6.7153 0.7400 7.3484 24 1 6.7163 0.7411 4.9234 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.1903 0.9285 -1.1371 33 1 3.6492 0.9284 -2.0277 34 1 2.8719 2.8822 -3.0994 35 1 3.2809 5.2025 -3.8105 36 1 5.1271 6.4913 -2.8156 37 1 6.5703 5.4605 -1.1091 38 1 7.0943 2.5658 -0.5474 39 1 2.7973 2.3320 2.5305 40 1 2.7980 0.5520 2.5303 41 1 5.0448 0.5519 3.5784 42 1 5.0449 2.3319 3.5789 43 1 4.1797 1.4412 8.1142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291683359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:43 Heat of formation + Delta-G solvation = -64.894572 kcal Electronic energy + Delta-G solvation = -23730.704016 eV Core-core repulsion = 20354.734016 eV Total energy + Delta-G solvation = -3375.970000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20694 -38.94660 -36.46254 -35.95084 -33.69177 -33.08624 -31.54158 -30.92663 -29.77751 -27.14290 -26.22314 -24.81901 -22.62910 -21.79928 -21.75541 -20.57679 -18.53167 -18.11426 -17.14357 -16.37230 -16.04266 -15.92853 -15.46990 -15.19488 -14.66833 -14.54911 -14.02856 -13.85917 -13.60310 -13.37496 -13.07326 -12.52914 -12.39754 -12.29881 -12.20736 -12.12838 -11.91532 -11.75537 -11.40517 -11.28991 -11.17914 -10.93703 -10.68389 -10.27731 -10.02109 -9.88425 -9.70439 -9.16122 -9.10679 -8.84103 -8.57033 -8.45171 -8.33379 -5.97376 -3.95148 1.16554 1.23907 3.27700 3.34731 3.42520 3.48415 3.60189 3.72785 4.37518 4.56494 4.69320 4.73092 4.90981 4.92764 4.97281 5.05573 5.21480 5.34780 5.38573 5.41060 5.44877 5.49664 5.63842 5.74373 5.79482 5.85176 5.91593 5.97799 6.08564 6.19015 6.22569 6.26873 6.28554 6.36224 6.46994 6.76093 6.80188 6.86070 7.47215 7.53868 7.78892 7.88404 7.93075 8.57620 8.86049 9.06682 9.66363 11.15640 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.004974 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.068493 B = 5627.627533 C = 7031.098042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.112 3.888 4 N -0.620 5.620 5 C 0.164 3.836 6 C -0.134 4.134 7 C -0.095 4.095 8 C -0.139 4.139 9 C -0.104 4.104 10 C -0.154 4.154 11 C 0.131 3.869 12 O -0.461 6.461 13 C 0.507 3.493 14 O -0.507 6.507 15 C -0.119 4.119 16 C 0.004 3.996 17 C -0.522 4.522 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.906 5.906 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.383 0.617 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 2.499 -24.327 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.011 4.011 4 N -0.354 5.354 5 C 0.041 3.959 6 C -0.136 4.136 7 C -0.114 4.114 8 C -0.157 4.157 9 C -0.123 4.123 10 C -0.173 4.173 11 C 0.085 3.915 12 O -0.270 6.270 13 C 0.296 3.704 14 O -0.380 6.380 15 C -0.159 4.159 16 C -0.034 4.034 17 C -0.560 4.560 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.545 5.545 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.185 1.185 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.239 0.761 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.738 2.703 -23.699 23.916 hybrid contribution 1.103 0.004 -0.215 1.124 sum -0.635 2.707 -23.914 24.075 Atomic orbital electron populations 1.21698 0.95254 1.01860 1.01922 1.21980 0.96042 0.97462 1.02763 1.21579 0.79794 0.96653 1.03092 1.48103 1.06115 1.75954 1.05277 1.20009 0.98357 0.91631 0.85932 1.20738 0.97504 0.98029 0.97370 1.20932 0.98436 0.95171 0.96836 1.21074 0.98672 0.94758 1.01214 1.21018 0.95196 0.99623 0.96419 1.21533 1.01518 0.95787 0.98439 1.18552 0.92744 0.91459 0.88784 1.85207 1.39157 1.72818 1.29829 1.21429 0.88573 0.75023 0.85354 1.90638 1.13824 1.46625 1.86887 1.21671 1.00118 1.02654 0.91450 1.19347 0.94435 0.97515 0.92128 1.21139 0.94920 1.50941 0.88967 0.91069 1.24965 0.98408 0.94417 0.95453 1.69917 1.35762 1.51419 0.97387 0.86791 0.86355 0.78702 0.77674 1.20320 1.21566 1.18511 0.92589 0.92172 0.92944 0.92116 0.91088 0.89895 0.91181 0.89437 0.90572 0.86029 0.86110 0.86021 0.85645 0.76147 0.90250 0.90051 0.95993 0.96298 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.14 -1.53 6.26 -26.73 -0.17 -1.69 16 3 C 0.11 1.32 5.21 -4.05 -0.02 1.30 16 4 N -0.62 -8.99 2.46 -175.05 -0.43 -9.42 16 5 C 0.16 2.03 5.38 -5.19 -0.03 2.00 16 6 C -0.13 -1.67 5.47 -104.48 -0.57 -2.25 16 7 C -0.10 -0.98 9.66 -39.61 -0.38 -1.36 16 8 C -0.14 -1.35 10.04 -39.56 -0.40 -1.75 16 9 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 10 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 11 C 0.13 1.81 6.68 -39.22 -0.26 1.55 16 12 O -0.46 -7.26 9.21 -43.68 -0.40 -7.66 16 13 C 0.51 9.65 7.59 -10.99 -0.08 9.57 16 14 O -0.51 -10.99 12.12 -18.68 -0.23 -11.21 16 15 C -0.12 -2.46 4.19 -27.88 -0.12 -2.58 16 16 C 0.00 0.09 3.33 -27.88 -0.09 0.00 16 17 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 21 Si 0.88 23.16 27.47 -169.99 -4.67 18.49 16 22 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.89 7.22 -51.93 -0.37 0.52 16 30 H 0.08 1.05 6.44 -51.93 -0.33 0.71 16 31 H 0.07 0.68 8.07 -51.93 -0.42 0.27 16 32 H 0.09 1.18 7.14 -51.93 -0.37 0.81 16 33 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.38 4.47 9.06 45.56 0.41 4.88 16 39 H 0.08 1.58 7.40 -51.93 -0.38 1.20 16 40 H 0.08 1.57 7.18 -51.93 -0.37 1.20 16 41 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 42 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -35.39 351.08 -8.63 -44.01 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.99 Total: 1.94 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -2.98 Total: -13.63 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.34 Total: -37.23 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.63 Total: -18.87 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.67 Total: 18.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.39 -8.63 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291683359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.883 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds