Wall clock time and date at job start Tue Mar 31 2020 06:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 N 1.46493 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99811 * 90.00429 * 4 3 2 6 6 C 1.50703 * 109.47289 * 89.99713 * 5 4 3 7 7 C 1.38161 * 120.02675 * 260.00179 * 6 5 4 8 8 C 1.38243 * 120.05456 * 179.97438 * 7 6 5 9 9 C 1.38283 * 120.11062 * 0.02562 * 8 7 6 10 10 C 1.38128 * 120.05871 * 0.02566 * 9 8 7 11 11 C 1.38705 * 120.02504 * 79.72349 * 6 5 4 12 12 O 1.35905 * 120.05740 * 0.02562 * 11 6 5 13 13 C 1.34778 * 120.00131 * 269.99999 * 4 3 2 14 14 O 1.21279 * 119.99362 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99888 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.46881 * 179.97438 * 15 13 4 17 17 C 1.50696 * 109.46881 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00439 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00045 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00126 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99947 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47135 * 89.99613 * 21 19 17 23 23 H 1.48494 * 109.47198 * 209.99989 * 21 19 17 24 24 H 1.48506 * 109.46875 * 330.00384 * 21 19 17 25 25 H 1.09005 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47602 * 300.00018 * 1 2 3 27 27 H 1.08996 * 109.47242 * 60.00308 * 1 2 3 28 28 H 1.09001 * 109.46881 * 239.99991 * 2 1 3 29 29 H 1.08997 * 109.46990 * 120.00180 * 2 1 3 30 30 H 1.09006 * 109.46591 * 59.99524 * 3 2 1 31 31 H 1.09005 * 109.46719 * 300.00285 * 3 2 1 32 32 H 1.09001 * 109.47060 * 210.00163 * 5 4 3 33 33 H 1.09004 * 109.47073 * 329.99652 * 5 4 3 34 34 H 1.08000 * 119.97625 * 359.97306 * 7 6 5 35 35 H 1.08000 * 119.94599 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.97589 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.03024 * 179.97438 * 10 9 8 38 38 H 0.96695 * 114.00134 * 90.00314 * 12 11 6 39 39 H 1.08997 * 109.47440 * 299.99997 * 15 13 4 40 40 H 1.09001 * 109.47288 * 59.99909 * 15 13 4 41 41 H 1.09002 * 109.46736 * 299.99893 * 16 15 13 42 42 H 1.09001 * 109.47233 * 59.99877 * 16 15 13 43 43 H 0.96999 * 119.99960 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2380 1.4424 -1.2679 6 6 4.4893 2.8632 -1.7030 7 6 3.6826 3.4456 -2.6615 8 6 3.9123 4.7491 -3.0607 9 6 4.9499 5.4730 -2.5024 10 6 5.7599 4.8949 -1.5445 11 6 5.5271 3.5890 -1.1373 12 8 6.3188 3.0200 -0.1905 13 6 4.1784 1.4426 1.1681 14 8 5.3912 1.4431 1.1685 15 6 3.4244 1.4423 2.4729 16 6 4.4182 1.4419 3.6362 17 6 3.6642 1.4422 4.9409 18 1 2.5842 1.4430 4.9406 19 6 4.3531 1.4414 6.1353 20 7 3.6950 1.4421 7.2740 21 14 6.2211 1.4407 6.1361 22 1 6.7166 2.8406 6.1368 23 1 6.7153 0.7400 7.3484 24 1 6.7163 0.7411 4.9234 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.1903 0.9285 -1.1371 33 1 3.6492 0.9284 -2.0277 34 1 2.8719 2.8822 -3.0994 35 1 3.2809 5.2025 -3.8105 36 1 5.1271 6.4913 -2.8156 37 1 6.5703 5.4605 -1.1091 38 1 7.0943 2.5658 -0.5474 39 1 2.7973 2.3320 2.5305 40 1 2.7980 0.5520 2.5303 41 1 5.0448 0.5519 3.5784 42 1 5.0449 2.3319 3.5789 43 1 4.1797 1.4412 8.1142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291683359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:42 Heat of formation + Delta-G solvation = -86.583988 kcal Electronic energy + Delta-G solvation = -23731.644540 eV Core-core repulsion = 20354.734016 eV Total energy + Delta-G solvation = -3376.910524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28733 -40.12465 -37.48136 -37.11422 -35.59825 -34.26914 -33.26571 -32.18893 -30.66249 -28.60075 -27.40683 -26.17318 -23.50863 -23.25380 -22.61550 -22.03634 -19.93309 -19.12342 -19.05981 -17.75663 -17.23644 -16.96627 -16.53208 -16.29639 -16.17874 -15.88986 -15.48088 -14.89511 -14.82709 -14.69370 -14.55826 -14.01368 -13.83691 -13.41665 -13.20257 -13.11992 -13.03180 -12.92914 -12.77277 -12.55396 -12.27794 -12.10996 -12.01818 -11.94950 -11.80543 -11.48218 -11.38587 -11.23756 -10.79230 -10.50470 -9.81044 -9.58457 -9.40322 -8.32860 -6.35384 0.30855 0.40427 1.31458 1.32313 1.48662 1.87374 2.19228 2.33854 2.83214 3.02699 3.48063 3.73606 3.85916 3.99096 4.04132 4.17685 4.20520 4.33361 4.39315 4.43271 4.51079 4.57638 4.61639 4.65342 4.74940 4.79288 4.94617 5.01524 5.04741 5.09350 5.23071 5.30080 5.33622 5.44377 5.46058 5.49907 5.56595 5.58703 5.61024 5.78016 5.99176 6.22900 6.51449 6.70189 6.99215 7.29793 7.44695 8.83037 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.004974 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.068493 B = 5627.627533 C = 7031.098042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.107 3.893 4 N -0.608 5.608 5 C 0.164 3.836 6 C -0.148 4.148 7 C -0.090 4.090 8 C -0.136 4.136 9 C -0.105 4.105 10 C -0.173 4.173 11 C 0.099 3.901 12 O -0.489 6.489 13 C 0.505 3.495 14 O -0.540 6.540 15 C -0.113 4.113 16 C 0.012 3.988 17 C -0.529 4.529 18 H 0.047 0.953 19 C 0.016 3.984 20 N -0.943 5.943 21 Si 0.939 3.061 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.262 1.262 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.123 0.877 38 H 0.390 0.610 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.010 0.990 42 H 0.003 0.997 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 2.896 -27.332 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.015 4.015 4 N -0.341 5.341 5 C 0.042 3.958 6 C -0.150 4.150 7 C -0.108 4.108 8 C -0.154 4.154 9 C -0.123 4.123 10 C -0.192 4.192 11 C 0.054 3.946 12 O -0.300 6.300 13 C 0.294 3.706 14 O -0.417 6.417 15 C -0.153 4.153 16 C -0.026 4.026 17 C -0.567 4.567 18 H 0.065 0.935 19 C -0.182 4.182 20 N -0.584 5.584 21 Si 0.763 3.237 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.186 1.186 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.247 0.753 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.028 0.972 42 H 0.021 0.979 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.720 3.099 -26.742 27.058 hybrid contribution 1.296 -0.075 0.642 1.448 sum -1.425 3.024 -26.100 26.313 Atomic orbital electron populations 1.21676 0.93825 1.02396 1.02495 1.21915 0.97191 0.96362 1.02221 1.21820 0.77871 0.97731 1.04091 1.48007 1.07327 1.74043 1.04738 1.20181 0.98063 0.92250 0.85316 1.20778 0.97865 0.97892 0.98443 1.21288 0.98353 0.95604 0.95595 1.21497 0.98282 0.94492 1.01106 1.21363 0.94767 1.00777 0.95374 1.21665 1.02417 0.95517 0.99563 1.18914 0.93625 0.92428 0.89644 1.85171 1.40005 1.73281 1.31544 1.21005 0.88025 0.75468 0.86140 1.90630 1.14986 1.48560 1.87484 1.21472 0.99091 1.03471 0.91232 1.19150 0.94807 0.95974 0.92630 1.21422 0.94173 1.50343 0.90717 0.93473 1.25780 1.03068 0.94190 0.95171 1.70022 1.37690 1.52542 0.98119 0.85823 0.80816 0.79028 0.77998 1.19669 1.20024 1.18605 0.92126 0.93121 0.90851 0.90650 0.93665 0.91129 0.87968 0.91186 0.86821 0.82899 0.82900 0.83682 0.85936 0.75285 0.89779 0.88997 0.97200 0.97897 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.14 -2.63 6.26 30.59 0.19 -2.44 16 3 C 0.11 2.25 5.21 86.38 0.45 2.70 16 4 N -0.61 -16.82 2.46 -826.14 -2.03 -18.85 16 5 C 0.16 3.74 5.38 85.63 0.46 4.20 16 6 C -0.15 -3.40 5.47 -19.77 -0.11 -3.51 16 7 C -0.09 -1.50 9.66 22.25 0.22 -1.28 16 8 C -0.14 -2.10 10.04 22.28 0.22 -1.87 16 9 C -0.10 -1.91 10.04 22.25 0.22 -1.68 16 10 C -0.17 -4.17 9.99 22.37 0.22 -3.94 16 11 C 0.10 2.75 6.68 22.51 0.15 2.90 16 12 O -0.49 -16.10 9.21 -69.31 -0.64 -16.73 16 13 C 0.51 19.37 7.59 87.66 0.67 20.03 16 14 O -0.54 -24.03 12.12 20.15 0.24 -23.78 16 15 C -0.11 -4.74 4.19 29.85 0.13 -4.62 16 16 C 0.01 0.65 3.33 29.85 0.10 0.75 16 17 C -0.53 -31.89 9.66 25.60 0.25 -31.64 16 18 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 19 C 0.02 0.96 5.47 84.66 0.46 1.42 16 20 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 21 Si 0.94 48.51 27.47 68.60 1.88 50.39 16 22 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.26 -13.47 6.54 99.48 0.65 -12.82 16 25 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.10 7.22 -2.39 -0.02 1.08 16 30 H 0.07 1.68 6.44 -2.38 -0.02 1.67 16 31 H 0.10 1.54 8.07 -2.38 -0.02 1.52 16 32 H 0.07 1.86 7.14 -2.39 -0.02 1.85 16 33 H 0.11 1.72 7.93 -2.38 -0.02 1.70 16 34 H 0.15 1.55 8.04 -2.91 -0.02 1.53 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 37 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.39 9.94 9.06 -74.06 -0.67 9.27 16 39 H 0.08 3.41 7.40 -2.39 -0.02 3.39 16 40 H 0.09 3.61 7.18 -2.39 -0.02 3.59 16 41 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 42 H 0.00 0.15 7.53 -2.39 -0.02 0.13 16 43 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -78.40 351.08 4.37 -74.02 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.27 Total: 15.68 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.34 Total: -20.53 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.73 Total: -79.05 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.39 Total: -40.52 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.88 Total: 50.39 kcal Total: -78.40 4.37 -74.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291683359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.563 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds