Wall clock time and date at job start Tue Mar 31 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35974 * 117.00188 * 2 1 4 4 C 1.38561 * 120.08232 * 0.25243 * 3 2 1 5 5 C 1.38234 * 120.01246 * 180.30159 * 4 3 2 6 6 C 1.38277 * 120.18467 * 359.71901 * 5 4 3 7 7 C 1.38196 * 120.15997 * 0.02562 * 6 5 4 8 8 C 1.38716 * 119.98604 * 359.97438 * 7 6 5 9 9 N 1.40129 * 120.09275 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99588 * 89.99597 * 9 8 7 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72972 * 10 9 8 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99715 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46907 * 59.99797 * 18 16 14 20 20 H 1.48501 * 109.46931 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47000 * 299.99906 * 18 16 14 22 22 C 1.46496 * 120.00066 * 270.00479 * 9 8 7 23 23 C 1.52998 * 109.47314 * 299.99430 * 22 9 8 24 24 C 1.53000 * 109.47508 * 59.99767 * 22 9 8 25 25 H 1.08997 * 109.47076 * 60.00087 * 1 2 3 26 26 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47417 * 299.99983 * 1 2 3 28 28 H 1.08003 * 119.98941 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.90732 * 179.74268 * 5 4 3 30 30 H 1.08005 * 119.91926 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.00773 * 180.02562 * 7 6 5 32 32 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 33 33 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 34 34 H 1.08995 * 109.46638 * 300.00002 * 13 12 10 35 35 H 1.08998 * 109.46846 * 59.99549 * 13 12 10 36 36 H 0.97012 * 120.00031 * 180.02562 * 17 16 14 37 37 H 1.09008 * 109.47072 * 179.97438 * 22 9 8 38 38 H 1.08999 * 109.46861 * 59.99881 * 23 22 9 39 39 H 1.08992 * 109.47419 * 180.02562 * 23 22 9 40 40 H 1.09005 * 109.46993 * 300.00351 * 23 22 9 41 41 H 1.08995 * 109.47041 * 59.99471 * 24 22 9 42 42 H 1.09002 * 109.47367 * 180.02562 * 24 22 9 43 43 H 1.09008 * 109.46776 * 299.99963 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3747 0.0053 5 6 1.9224 3.6056 -0.0010 6 6 3.3032 3.6807 -0.0067 7 6 4.0614 2.5253 -0.0067 8 6 3.4372 1.2865 -0.0004 9 7 4.2039 0.1135 0.0002 10 6 4.5772 -0.4469 1.1677 11 8 4.2493 0.0638 2.2179 12 6 5.3965 -1.7117 1.1684 13 6 5.6766 -2.1372 2.6111 14 6 6.4964 -3.4017 2.6118 15 1 6.7881 -3.8566 1.6767 16 6 6.8740 -3.9778 3.8061 17 7 6.5183 -3.4241 4.9447 18 14 7.8897 -5.5456 3.8070 19 1 9.1747 -5.3033 3.1034 20 1 8.1615 -5.9584 5.2073 21 1 7.1395 -6.6217 3.1110 22 6 4.5996 -0.5035 -1.2682 23 6 3.3486 -0.8801 -2.0644 24 6 5.4400 0.4868 -2.0769 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2148 2.3195 0.0098 29 1 1.3339 4.5111 -0.0011 30 1 3.7902 4.6447 -0.0112 31 1 5.1396 2.5868 -0.0108 32 1 4.8461 -2.5015 0.6570 33 1 6.3400 -1.5338 0.6524 34 1 6.2270 -1.3475 3.1224 35 1 4.7331 -2.3151 3.1271 36 1 6.7843 -3.8292 5.7851 37 1 5.1871 -1.3998 -1.0686 38 1 2.7615 0.0163 -2.2640 39 1 3.6431 -1.3396 -3.0079 40 1 2.7500 -1.5857 -1.4883 41 1 6.3312 0.7551 -1.5097 42 1 5.7341 0.0279 -3.0208 43 1 4.8528 1.3833 -2.2766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291710222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:32 Heat of formation + Delta-G solvation = -50.666631 kcal Electronic energy + Delta-G solvation = -24014.645135 eV Core-core repulsion = 20639.292104 eV Total energy + Delta-G solvation = -3375.353031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73263 -38.98049 -37.29234 -36.16178 -33.46564 -32.04010 -31.04211 -30.25649 -29.33058 -27.39912 -27.03788 -25.71330 -23.01859 -22.10809 -21.85560 -20.94652 -18.87087 -17.78495 -17.03425 -16.51121 -16.21802 -15.83361 -15.49277 -14.93119 -14.75447 -14.42088 -14.24491 -13.92152 -13.69784 -13.38750 -13.15388 -12.63809 -12.40098 -12.21313 -12.14115 -12.10247 -11.90766 -11.66542 -11.30746 -11.20522 -11.11878 -11.05632 -10.87844 -10.75206 -10.54259 -9.90254 -9.55464 -9.16208 -9.04260 -8.80822 -8.53721 -8.27461 -8.13260 -5.91758 -3.96125 1.25041 1.42387 3.20408 3.25736 3.36981 3.37464 3.41755 3.43736 3.70472 4.50438 4.76379 4.83325 4.89620 5.00985 5.07699 5.12713 5.17479 5.24512 5.38321 5.41027 5.42964 5.47419 5.53701 5.62065 5.67494 5.81342 5.87255 5.97174 6.14416 6.22136 6.24208 6.27266 6.31447 6.39420 6.46498 6.65543 6.90665 7.05083 7.48502 7.78633 7.80043 7.91660 8.12101 8.43205 8.85381 9.12285 9.67018 11.19185 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.004037 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.126459 B = 6933.339825 C = 7063.657437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.135 3.865 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.154 4.154 7 C -0.074 4.074 8 C 0.126 3.874 9 N -0.574 5.574 10 C 0.517 3.483 11 O -0.523 6.523 12 C -0.126 4.126 13 C 0.038 3.962 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.131 3.869 23 C -0.156 4.156 24 C -0.163 4.163 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.103 0.897 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 11.836 -17.057 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.087 3.913 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.173 4.173 7 C -0.094 4.094 8 C 0.035 3.965 9 N -0.307 5.307 10 C 0.308 3.692 11 O -0.396 6.396 12 C -0.166 4.166 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.029 3.971 23 C -0.214 4.214 24 C -0.221 4.221 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.322 11.846 -16.253 22.606 hybrid contribution 0.211 -0.660 0.043 0.694 sum -10.111 11.186 -16.210 22.139 Atomic orbital electron populations 1.23049 0.78944 1.03930 1.00951 1.86219 1.20749 1.26259 1.88122 1.19350 0.91703 0.84651 0.95557 1.21121 0.99859 0.92133 1.09679 1.20906 0.94634 0.96801 0.97792 1.20919 0.93781 0.98015 1.04548 1.21230 1.00262 0.90845 0.97037 1.16816 0.86637 0.87222 1.05870 1.45770 1.53610 1.24517 1.06816 1.21676 0.79259 0.86269 0.81977 1.90674 1.54573 1.63542 1.30837 1.21886 0.97988 0.92144 1.04541 1.18902 0.97473 0.95975 0.87627 1.21176 1.33661 1.09263 0.92324 0.92659 1.25015 0.96230 0.97425 0.95648 1.69998 1.45786 1.39802 0.97270 0.86661 0.80684 0.83690 0.76943 1.20252 1.21315 1.20264 1.21238 0.95989 0.96677 0.83227 1.22108 0.97717 1.01908 0.99671 1.22200 1.00144 0.99761 1.00037 0.92957 0.88285 0.92754 0.85438 0.85866 0.85726 0.85318 0.90158 0.90239 0.95862 0.95857 0.92941 0.87911 0.92831 0.91962 0.91560 0.92059 0.91505 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.42 8.63 -19.66 -0.17 -4.59 16 3 C 0.13 2.00 5.81 -39.07 -0.23 1.77 16 4 C -0.21 -2.52 9.04 -39.46 -0.36 -2.88 16 5 C -0.08 -0.91 10.04 -39.57 -0.40 -1.31 16 6 C -0.15 -1.79 10.04 -39.58 -0.40 -2.18 16 7 C -0.07 -1.04 8.85 -39.42 -0.35 -1.39 16 8 C 0.13 1.99 3.44 -83.49 -0.29 1.70 16 9 N -0.57 -9.56 2.18 -106.25 -0.23 -9.80 16 10 C 0.52 10.96 7.64 -10.98 -0.08 10.87 16 11 O -0.52 -13.37 15.96 5.55 0.09 -13.28 16 12 C -0.13 -2.70 3.95 -27.88 -0.11 -2.81 16 13 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 14 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.84 13.29 55.43 0.74 -27.11 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.13 1.71 3.16 -67.93 -0.21 1.50 16 23 C -0.16 -1.81 8.09 37.16 0.30 -1.51 16 24 C -0.16 -1.75 8.89 37.16 0.33 -1.42 16 25 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 28 H 0.13 1.22 6.30 -52.48 -0.33 0.89 16 29 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.08 1.59 7.79 -51.92 -0.40 1.19 16 33 H 0.08 1.54 7.79 -51.93 -0.40 1.14 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.26 7.68 8.31 -40.81 -0.34 7.34 16 37 H 0.10 1.35 5.77 -51.92 -0.30 1.05 16 38 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.86 7.67 -51.93 -0.40 0.46 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.62 7.05 -51.92 -0.37 0.25 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -35.74 352.13 -7.32 -43.06 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.70 Total: -1.16 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.33 Total: -9.30 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.50 Total: -36.90 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.08 Total: -17.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.74 -7.32 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291710222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.608 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds