Wall clock time and date at job start Tue Mar 31 2020 06:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35974 * 117.00188 * 2 1 4 4 C 1.38561 * 120.08232 * 0.25243 * 3 2 1 5 5 C 1.38234 * 120.01246 * 180.30159 * 4 3 2 6 6 C 1.38277 * 120.18467 * 359.71901 * 5 4 3 7 7 C 1.38196 * 120.15997 * 0.02562 * 6 5 4 8 8 C 1.38716 * 119.98604 * 359.97438 * 7 6 5 9 9 N 1.40129 * 120.09275 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99588 * 89.99597 * 9 8 7 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72972 * 10 9 8 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99715 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46907 * 59.99797 * 18 16 14 20 20 H 1.48501 * 109.46931 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47000 * 299.99906 * 18 16 14 22 22 C 1.46496 * 120.00066 * 270.00479 * 9 8 7 23 23 C 1.52998 * 109.47314 * 299.99430 * 22 9 8 24 24 C 1.53000 * 109.47508 * 59.99767 * 22 9 8 25 25 H 1.08997 * 109.47076 * 60.00087 * 1 2 3 26 26 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47417 * 299.99983 * 1 2 3 28 28 H 1.08003 * 119.98941 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.90732 * 179.74268 * 5 4 3 30 30 H 1.08005 * 119.91926 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.00773 * 180.02562 * 7 6 5 32 32 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 33 33 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 34 34 H 1.08995 * 109.46638 * 300.00002 * 13 12 10 35 35 H 1.08998 * 109.46846 * 59.99549 * 13 12 10 36 36 H 0.97012 * 120.00031 * 180.02562 * 17 16 14 37 37 H 1.09008 * 109.47072 * 179.97438 * 22 9 8 38 38 H 1.08999 * 109.46861 * 59.99881 * 23 22 9 39 39 H 1.08992 * 109.47419 * 180.02562 * 23 22 9 40 40 H 1.09005 * 109.46993 * 300.00351 * 23 22 9 41 41 H 1.08995 * 109.47041 * 59.99471 * 24 22 9 42 42 H 1.09002 * 109.47367 * 180.02562 * 24 22 9 43 43 H 1.09008 * 109.46776 * 299.99963 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3747 0.0053 5 6 1.9224 3.6056 -0.0010 6 6 3.3032 3.6807 -0.0067 7 6 4.0614 2.5253 -0.0067 8 6 3.4372 1.2865 -0.0004 9 7 4.2039 0.1135 0.0002 10 6 4.5772 -0.4469 1.1677 11 8 4.2493 0.0638 2.2179 12 6 5.3965 -1.7117 1.1684 13 6 5.6766 -2.1372 2.6111 14 6 6.4964 -3.4017 2.6118 15 1 6.7881 -3.8566 1.6767 16 6 6.8740 -3.9778 3.8061 17 7 6.5183 -3.4241 4.9447 18 14 7.8897 -5.5456 3.8070 19 1 9.1747 -5.3033 3.1034 20 1 8.1615 -5.9584 5.2073 21 1 7.1395 -6.6217 3.1110 22 6 4.5996 -0.5035 -1.2682 23 6 3.3486 -0.8801 -2.0644 24 6 5.4400 0.4868 -2.0769 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2148 2.3195 0.0098 29 1 1.3339 4.5111 -0.0011 30 1 3.7902 4.6447 -0.0112 31 1 5.1396 2.5868 -0.0108 32 1 4.8461 -2.5015 0.6570 33 1 6.3400 -1.5338 0.6524 34 1 6.2270 -1.3475 3.1224 35 1 4.7331 -2.3151 3.1271 36 1 6.7843 -3.8292 5.7851 37 1 5.1871 -1.3998 -1.0686 38 1 2.7615 0.0163 -2.2640 39 1 3.6431 -1.3396 -3.0079 40 1 2.7500 -1.5857 -1.4883 41 1 6.3312 0.7551 -1.5097 42 1 5.7341 0.0279 -3.0208 43 1 4.8528 1.3833 -2.2766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291710222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:31 Heat of formation + Delta-G solvation = -72.887028 kcal Electronic energy + Delta-G solvation = -24015.608684 eV Core-core repulsion = 20639.292104 eV Total energy + Delta-G solvation = -3376.316579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90702 -40.28629 -38.37543 -37.42467 -35.61091 -33.27510 -32.90396 -31.24660 -30.56263 -28.30908 -27.97201 -27.60269 -24.56011 -23.17750 -23.06594 -22.46256 -20.19185 -18.99865 -18.72223 -17.73291 -17.59172 -17.30516 -16.52495 -16.45486 -16.31369 -15.82324 -15.36856 -14.98071 -14.88814 -14.81047 -14.26081 -14.21074 -13.84282 -13.53327 -13.46205 -13.13732 -13.01133 -12.78824 -12.76480 -12.61571 -12.53054 -12.27095 -12.05950 -11.98016 -11.95354 -11.86621 -11.49694 -11.32014 -10.76546 -10.56261 -9.86917 -9.85103 -9.13410 -8.17443 -6.32241 0.25591 0.44718 1.42061 1.47270 1.54917 1.64869 1.98142 2.37941 2.43776 2.73824 3.15207 3.82430 3.87229 3.90196 3.99110 4.18675 4.22838 4.32035 4.35151 4.37710 4.41579 4.44803 4.50731 4.56802 4.67676 4.72344 4.79144 4.88113 4.93392 4.95861 5.11715 5.24480 5.31756 5.34435 5.44331 5.47287 5.50778 5.59699 5.71047 5.83171 5.92197 6.16580 6.35756 6.47648 6.85211 7.29444 7.38084 8.95274 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.004037 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.126459 B = 6933.339825 C = 7063.657437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.115 3.885 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.153 4.153 7 C -0.089 4.089 8 C 0.087 3.913 9 N -0.557 5.557 10 C 0.514 3.486 11 O -0.583 6.583 12 C -0.112 4.112 13 C 0.047 3.953 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.938 5.938 18 Si 0.976 3.024 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.262 1.262 22 C 0.118 3.882 23 C -0.145 4.145 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.056 0.944 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.153 0.847 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.104 0.896 34 H -0.019 1.019 35 H -0.022 1.022 36 H 0.263 0.737 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 11.986 -19.831 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.172 4.172 7 C -0.109 4.109 8 C -0.003 4.003 9 N -0.288 5.288 10 C 0.305 3.695 11 O -0.461 6.461 12 C -0.152 4.152 13 C 0.009 3.991 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.185 1.185 20 H -0.213 1.213 21 H -0.187 1.187 22 C 0.017 3.983 23 C -0.203 4.203 24 C -0.212 4.212 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.074 0.926 28 H 0.171 0.829 29 H 0.178 0.822 30 H 0.171 0.829 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.000 1.000 35 H -0.003 1.003 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.463 12.007 -19.117 24.882 hybrid contribution 0.151 -0.606 0.868 1.069 sum -10.312 11.401 -18.250 23.862 Atomic orbital electron populations 1.23301 0.76890 1.05132 1.02196 1.86166 1.23056 1.26795 1.88332 1.19557 0.91651 0.85652 0.96376 1.21486 1.01136 0.91648 1.08628 1.21382 0.94664 0.97751 0.95601 1.21289 0.94319 0.98305 1.03243 1.21367 1.00562 0.91200 0.97743 1.17155 0.87424 0.87173 1.08594 1.45610 1.52198 1.24483 1.06465 1.21532 0.79147 0.86122 0.82663 1.90636 1.57153 1.65141 1.33209 1.21635 0.99731 0.93231 1.00577 1.18659 0.94597 0.95002 0.90844 1.21647 1.33546 1.09493 0.93398 0.90512 1.26154 0.97517 1.01654 0.95009 1.70190 1.47391 1.42028 0.98220 0.85348 0.79119 0.78482 0.77138 1.18520 1.21284 1.18651 1.21611 0.97240 0.97246 0.82209 1.22009 0.96560 1.01459 1.00258 1.22128 0.99217 0.99286 1.00576 0.90476 0.87277 0.92575 0.82922 0.82157 0.82914 0.85522 0.88262 0.87782 1.00028 1.00347 0.92850 0.87991 0.93091 0.89100 0.93352 0.92787 0.88769 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.77 8.63 -93.26 -0.81 -10.57 16 3 C 0.11 3.38 5.81 22.60 0.13 3.51 16 4 C -0.21 -4.69 9.04 22.35 0.20 -4.49 16 5 C -0.08 -1.45 10.04 22.28 0.22 -1.23 16 6 C -0.15 -3.26 10.04 22.27 0.22 -3.04 16 7 C -0.09 -2.48 8.85 22.37 0.20 -2.28 16 8 C 0.09 2.79 3.44 38.18 0.13 2.92 16 9 N -0.56 -18.96 2.18 -608.44 -1.33 -20.28 16 10 C 0.51 22.87 7.64 87.66 0.67 23.54 16 11 O -0.58 -31.97 15.96 -3.07 -0.05 -32.02 16 12 C -0.11 -4.95 3.95 29.85 0.12 -4.84 16 13 C 0.05 2.74 4.26 29.85 0.13 2.86 16 14 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 15 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 16 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 17 N -0.94 -60.94 13.29 21.45 0.28 -60.65 16 18 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 C 0.12 2.99 3.16 44.99 0.14 3.13 16 23 C -0.14 -3.17 8.09 71.98 0.58 -2.59 16 24 C -0.15 -3.04 8.89 71.98 0.64 -2.40 16 25 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.02 7.65 -2.39 -0.02 1.00 16 28 H 0.15 2.50 6.30 -2.91 -0.02 2.49 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.10 3.97 7.79 -2.38 -0.02 3.95 16 33 H 0.10 4.03 7.79 -2.39 -0.02 4.01 16 34 H -0.02 -1.24 8.10 -2.39 -0.02 -1.25 16 35 H -0.02 -1.46 8.10 -2.39 -0.02 -1.48 16 36 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 37 H 0.10 2.55 5.77 -2.38 -0.01 2.54 16 38 H 0.05 1.15 6.95 -2.39 -0.02 1.13 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.23 7.67 -2.38 -0.02 1.21 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.16 7.05 -2.38 -0.02 1.15 16 Total: -1.00 -83.25 352.13 6.31 -76.94 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.98 Total: 14.46 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 5.20 Total: -14.90 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.04 Total: -80.94 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.85 Total: -42.59 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -83.25 6.31 -76.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291710222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.053 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds